BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0022.20
(96 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g18540 putative vicilin storage protein (globulin-like) 33 0.024
At5g53800 unknown protein 32 0.041
At1g23370 homeotic protein, putative 32 0.041
At4g17150 unknown protein 32 0.054
At3g57910 putative protein 32 0.054
At3g30560 hypothetical protein 32 0.054
At1g73960 unknown protein 32 0.054
At1g20920 putative RNA helicase 32 0.054
At4g33690 hypothetical protein 31 0.12
At2g18220 unknown protein 31 0.12
At1g29000 hypothetical protein 31 0.12
At5g16780 putative protein 30 0.16
At2g28910 unknown protein 30 0.16
At1g56110 SAR like DNA binding protein 30 0.21
At1g53720 putative cyclophilin (AtCYP59) 30 0.21
At5g43560 unknown protein 30 0.27
At3g28510 hypothetical protein 30 0.27
At2g41960 unknown protein 30 0.27
At2g24830 unknown protein 30 0.27
At3g59410 protein kinase like 29 0.35
>At2g18540 putative vicilin storage protein (globulin-like)
Length = 699
Score = 33.1 bits (74), Expect = 0.024
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 3 RRRTEEEDSKK----KKKRGRGGRRRTQPYHESKKKEKMRLKKRNREVLRFIEQ 52
RRR EEE+++K K++ +RR + E KK+E+ +KR E R E+
Sbjct: 437 RRRKEEEEARKREEAKRREEEEAKRREEEETERKKREEEEARKREEERKREEEE 490
Score = 30.0 bits (66), Expect = 0.21
Identities = 14/43 (32%), Positives = 26/43 (59%), Gaps = 4/43 (9%)
Query: 3 RRRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNRE 45
R+R EEE+ ++++K R+R E+K++E+ K+R E
Sbjct: 427 RKRREEEEIERRRKEEEEARKR----EEAKRREEEEAKRREEE 465
Score = 30.0 bits (66), Expect = 0.21
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 4 RRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNRE 45
+R EEE++++KK+ R+R E +K+E+ K+R E
Sbjct: 460 KRREEEETERKKREEEEARKR----EEERKREEEEAKRREEE 497
Score = 28.9 bits (63), Expect = 0.46
Identities = 17/46 (36%), Positives = 27/46 (57%), Gaps = 4/46 (8%)
Query: 3 RRRTEEEDSKKKKKRGRGGRR---RTQPYHESKKKEKMRLKKRNRE 45
+RR EEE +KK++ +R R + E+K++E+ R KKR E
Sbjct: 460 KRREEEETERKKREEEEARKREEERKREEEEAKRREEER-KKREEE 504
Score = 28.9 bits (63), Expect = 0.46
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 3 RRRTEEEDSKKKKKRGRGGRRRTQPYHE-SKKKEKMRLKKRNREVLRFIEQ 52
R+R EE++ K++++ R + E +K++E+ R +K EV R I +
Sbjct: 539 RKRREEQERKRREEEARKREEERKREEEMAKRREQERQRKEREEVERKIRE 589
Score = 28.1 bits (61), Expect = 0.78
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 3 RRRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNREVLRFIEQ 52
++R EEE K++++R R + E KK+E+ + R RE R E+
Sbjct: 470 KKREEEEARKREEERKREEEEAKRREEERKKREEEAEQARKREEEREKEE 519
Score = 27.7 bits (60), Expect = 1.0
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 3 RRRTEEEDSKKK------KKRGRGGRRRTQPYHESKKKEKMRLKKRNREVLRFIEQ 52
R+R E E+ ++K +KR +R + + K++E+M KKR E + E+
Sbjct: 575 RQRKEREEVERKIREEQERKREEEMAKRREQERQKKEREEMERKKREEEARKREEE 630
Score = 27.3 bits (59), Expect = 1.3
Identities = 16/49 (32%), Positives = 25/49 (50%), Gaps = 3/49 (6%)
Query: 3 RRRTEEEDSKKKKKRGRGGRRRTQPYHE---SKKKEKMRLKKRNREVLR 48
R+R E ED ++K++ RR + E +K+ E+ R KK E R
Sbjct: 639 RQRKEREDVERKRREEEAMRREEERKREEEAAKRAEEERRKKEEEEEKR 687
Score = 27.3 bits (59), Expect = 1.3
Identities = 15/52 (28%), Positives = 29/52 (54%), Gaps = 2/52 (3%)
Query: 3 RRRTEEEDSKKK--KKRGRGGRRRTQPYHESKKKEKMRLKKRNREVLRFIEQ 52
R+R EE + +++ KKR +R+ + E K++E+ K+R E + E+
Sbjct: 509 RKREEEREKEEEMAKKREEERQRKEREEVERKRREEQERKRREEEARKREEE 560
Score = 26.9 bits (58), Expect = 1.7
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 5 RTEEEDSKKKKKRGRGGRRRTQPYHE----SKKKEKMRLKKRNREVLR 48
+ EE+ KK+++ R+R + + +KK+E+ R +K EV R
Sbjct: 492 KRREEERKKREEEAEQARKREEEREKEEEMAKKREEERQRKEREEVER 539
Score = 26.9 bits (58), Expect = 1.7
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 3 RRRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKR 42
R+R EEE +++++R R + E +KKE+ K+R
Sbjct: 649 RKRREEEAMRREEERKREEEAAKRAEEERRKKEEEEEKRR 688
Score = 26.6 bits (57), Expect = 2.3
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 3 RRRTEEEDSKKKKKRGRGGRRRTQPYH---ESKKKEKMRLKKRNRE 45
R+R E E+ ++K++ + +RR + E +K+E+ K+R +E
Sbjct: 529 RQRKEREEVERKRREEQERKRREEEARKREEERKREEEMAKRREQE 574
Score = 26.2 bits (56), Expect = 3.0
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 4 RRTEEEDSKKKKKRGRGGRRRTQPY-------HESKKKEKMRLKKRNREVLRFIEQ 52
R+ +E + ++KKR R+R + + K++E + K+R E +R E+
Sbjct: 607 RQKKEREEMERKKREEEARKREEEMAKIREEERQRKEREDVERKRREEEAMRREEE 662
Score = 24.6 bits (52), Expect = 8.6
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 3 RRRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRL---------KKRNREVLRFIEQ 52
R+R EEE K++++R R + E ++KE+ + +KR E+ + EQ
Sbjct: 547 RKRREEEARKREEERKREEEMAKRREQERQRKEREEVERKIREEQERKREEEMAKRREQ 605
>At5g53800 unknown protein
Length = 339
Score = 32.3 bits (72), Expect = 0.041
Identities = 13/44 (29%), Positives = 27/44 (60%)
Query: 3 RRRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNREV 46
+ R EEE +K+++R + ++R + + KK K + KK++ +V
Sbjct: 138 KEREEEEKERKRRRREKDKKKRNKSDKDGDKKRKEKKKKKSEKV 181
Score = 28.9 bits (63), Expect = 0.46
Identities = 13/39 (33%), Positives = 25/39 (63%), Gaps = 1/39 (2%)
Query: 6 TEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNR 44
+E ED ++++KR R R + + +++EK + KKRN+
Sbjct: 124 SESEDERRRRKRKRKEREEEEKERKRRRREKDK-KKRNK 161
Score = 26.2 bits (56), Expect = 3.0
Identities = 14/39 (35%), Positives = 22/39 (55%), Gaps = 3/39 (7%)
Query: 3 RRRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKK 41
+RR E+D KKKR + + + E KKK+ ++KK
Sbjct: 148 KRRRREKD---KKKRNKSDKDGDKKRKEKKKKKSEKVKK 183
>At1g23370 homeotic protein, putative
Length = 149
Score = 32.3 bits (72), Expect = 0.041
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 2 GRRRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNREVL 47
GR+R E+ D K + R G R T SKKK+K +L + R+ L
Sbjct: 38 GRQRCEDRDLKDRLLRKFGSRISTLKLEFSKKKKKGKLPREARQAL 83
>At4g17150 unknown protein
Length = 502
Score = 32.0 bits (71), Expect = 0.054
Identities = 17/54 (31%), Positives = 27/54 (49%)
Query: 4 RRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNREVLRFIEQFLHSS 57
R EEEDSK+KK + G +P HE ++ + K+ +L+ + H S
Sbjct: 448 REEEEEDSKEKKIKNGGETDAKKPRHEKLERLEAFSKRLRHYILKRVNHRRHRS 501
>At3g57910 putative protein
Length = 265
Score = 32.0 bits (71), Expect = 0.054
Identities = 14/38 (36%), Positives = 21/38 (54%)
Query: 16 KRGRGGRRRTQPYHESKKKEKMRLKKRNREVLRFIEQF 53
+R R G R P+ E KKKE++ + R+V +E F
Sbjct: 128 RRSRAGVGREDPHKEKKKKEEIEAENEKRKVDEMLEDF 165
>At3g30560 hypothetical protein
Length = 1473
Score = 32.0 bits (71), Expect = 0.054
Identities = 23/97 (23%), Positives = 50/97 (50%), Gaps = 6/97 (6%)
Query: 1 MGRRRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNREVLRFIEQFLHSSSTN 60
+G ++TE SK+KKK+ R+ Y ++K++ + R++ R ++QF+ + T
Sbjct: 364 LGIKKTETNTSKRKKKQKDVSMRQWFDYRLQERKDEKHILLRSK---RLLQQFIVDAFTM 420
Query: 61 LQN---IYITTYPFKITQVMKKKVKPSLASGACTLSS 94
+++ +I K+ K+ V+ + +G LS+
Sbjct: 421 IESNRLRFIKKNQTKLRSTNKQAVQDASDAGDNDLSN 457
>At1g73960 unknown protein
Length = 1273
Score = 32.0 bits (71), Expect = 0.054
Identities = 12/58 (20%), Positives = 31/58 (52%)
Query: 7 EEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNREVLRFIEQFLHSSSTNLQNI 64
+E++ KK K++ R+R P + KK+ K K++ +E+ + + + ++++
Sbjct: 1170 KEKEKKKDKEKKEKKRKREDPVYLEKKRLKKEKKRKEKEMAKLVSSTTDPAKKKIESV 1227
>At1g20920 putative RNA helicase
Length = 1166
Score = 32.0 bits (71), Expect = 0.054
Identities = 15/43 (34%), Positives = 25/43 (57%)
Query: 3 RRRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNRE 45
RR E E+ +K++ + R R R + +++EK R +RNRE
Sbjct: 156 RREREREEREKERVKERERREREDGERDRREREKERGSRRNRE 198
Score = 28.9 bits (63), Expect = 0.46
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 3 RRRTEEEDSKKKKKRGRG-GRRRTQPYHESKKKEKMRLKKRNR 44
RR E+E ++ +R RG R+R + E K KE+ R K R R
Sbjct: 114 RRVNEKERGHREHERDRGKDRKRDREREERKDKEREREKDRER 156
Score = 28.9 bits (63), Expect = 0.46
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 3 RRRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNR 44
R+R E + +K K+R R + R + E +++EK R+K+R R
Sbjct: 134 RKRDREREERKDKERERE-KDRERREREREEREKERVKERER 174
Score = 25.0 bits (53), Expect = 6.6
Identities = 13/36 (36%), Positives = 18/36 (49%)
Query: 7 EEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKR 42
EE D KK ++ R + K++EK R KKR
Sbjct: 18 EEADLKKSRRDRDRSNERKKDKGSEKRREKDRRKKR 53
>At4g33690 hypothetical protein
Length = 281
Score = 30.8 bits (68), Expect = 0.12
Identities = 15/47 (31%), Positives = 27/47 (56%)
Query: 3 RRRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNREVLRF 49
RRRT+ S +++ R R+R + + KK K + KKR+R+ ++
Sbjct: 232 RRRTDSSSSDEEEVYKRAHRKRKEHKKKLSKKHKSKEKKRDRKKRKY 278
>At2g18220 unknown protein
Length = 779
Score = 30.8 bits (68), Expect = 0.12
Identities = 18/63 (28%), Positives = 35/63 (54%), Gaps = 10/63 (15%)
Query: 3 RRRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNREVLRFIEQFLHSSSTNLQ 62
+ + EE+ KKKKR RGG+ +T+ KK+++ L + + +E F+ SS +
Sbjct: 678 KEKEPEEEKTKKKKRKRGGKSKTE-----KKQDEQGLGEDD-----VVEDFVLSSDEEEE 727
Query: 63 NIY 65
+++
Sbjct: 728 DLF 730
>At1g29000 hypothetical protein
Length = 287
Score = 30.8 bits (68), Expect = 0.12
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 4 RRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNRE 45
++ EEED KKK++ + + + E KKKE+ KK +
Sbjct: 186 KKKEEEDKKKKEEEDKKKKEDEKKKEEEKKKEEENKKKEGEK 227
Score = 26.6 bits (57), Expect = 2.3
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 3 RRRTEEEDSK-----KKKKRGRGGRRRTQPYHESKKKEKMRLKKRNREVLRFIE 51
+++ EEED K KKK+ + + KKKE+++++ + + + +E
Sbjct: 193 KKKKEEEDKKKKEDEKKKEEEKKKEEENKKKEGEKKKEEVKVEVTTKTITQVVE 246
>At5g16780 putative protein
Length = 820
Score = 30.4 bits (67), Expect = 0.16
Identities = 17/48 (35%), Positives = 27/48 (55%), Gaps = 5/48 (10%)
Query: 3 RRRTEEEDSKKKKKRGRGGRR-----RTQPYHESKKKEKMRLKKRNRE 45
R+R+ +ED++K+ RGR R R + + K+KE+ R K R E
Sbjct: 66 RKRSRDEDTEKEISRGRDKEREKDKSRDRVKEKDKEKERNRHKDRENE 113
Score = 27.7 bits (60), Expect = 1.0
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 2 GRRRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNREVLRFIEQ 52
GRR+ ++ SK K+K + R + + K+KE+ R + R+ + + I +
Sbjct: 30 GRRKEKDHRSKDKEKDYDREKIRDKDHRRDKEKERDRKRSRDEDTEKEISR 80
Score = 26.6 bits (57), Expect = 2.3
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 3 RRRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKR--------NREVLRFIEQFL 54
R R +E+D +K++ R + R + + K K++ R+K+R + E + E++
Sbjct: 92 RDRVKEKDKEKERNRHKD-RENERDNEKEKDKDRARVKERASKKSHEDDDETHKAAERYE 150
Query: 55 HSSSTNL 61
HS + L
Sbjct: 151 HSDNRGL 157
>At2g28910 unknown protein
Length = 332
Score = 30.4 bits (67), Expect = 0.16
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 7 EEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNREVLR 48
EEE K++K RG +R ES+ ++ R+K+++R+ R
Sbjct: 222 EEEGRSKRRKERRGRKRDEDDSDESEDEDDRRVKRKSRKEKR 263
Score = 25.0 bits (53), Expect = 6.6
Identities = 11/40 (27%), Positives = 20/40 (49%)
Query: 5 RTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNR 44
R + S+K+K+R R R + ++ R K+RN+
Sbjct: 252 RRVKRKSRKEKRRRRSRRNHSDDSDSESSEDDRRQKRRNK 291
Score = 25.0 bits (53), Expect = 6.6
Identities = 15/47 (31%), Positives = 24/47 (50%), Gaps = 6/47 (12%)
Query: 6 TEEEDSKK------KKKRGRGGRRRTQPYHESKKKEKMRLKKRNREV 46
+E+ED ++ K+KR R RR +S+ E R +KR +V
Sbjct: 246 SEDEDDRRVKRKSRKEKRRRRSRRNHSDDSDSESSEDDRRQKRRNKV 292
>At1g56110 SAR like DNA binding protein
Length = 522
Score = 30.0 bits (66), Expect = 0.21
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 7 EEEDSKKKKKRGRGGRRRTQPYHESKKKEK 36
E+ + KK KK GG T H +KKK+K
Sbjct: 487 EKSEKKKTKKSKAGGEEETDDGHSTKKKKK 516
Score = 28.1 bits (61), Expect = 0.78
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 7 EEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKK 41
EE+ S+KKKK+ +R+ + E++K EK + KK
Sbjct: 465 EEDKSEKKKKK---EKRKMETAEENEKSEKKKTKK 496
>At1g53720 putative cyclophilin (AtCYP59)
Length = 506
Score = 30.0 bits (66), Expect = 0.21
Identities = 14/56 (25%), Positives = 32/56 (57%)
Query: 2 GRRRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNREVLRFIEQFLHSS 57
GRR+ + ED+++ +++ R + R E +++ + R + R++E R ++ H S
Sbjct: 425 GRRQHDREDARELERKHRERKERESREDEDRRRRRRREESRDKESRRERDEDDHRS 480
Score = 25.4 bits (54), Expect = 5.1
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 3 RRRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRN 43
RRR E+S+ K+ R R R + H S + K R ++R+
Sbjct: 456 RRRRRREESRDKESR----RERDEDDHRSHRDYKERRRERD 492
Score = 24.6 bits (52), Expect = 8.6
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 3 RRRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNREVLR 48
RRR E D + +++R R + Y E +++ R + R R
Sbjct: 459 RRREESRDKESRRERDEDDHRSHRDYKERRRERDDRHGREARHERR 504
>At5g43560 unknown protein
Length = 1055
Score = 29.6 bits (65), Expect = 0.27
Identities = 13/45 (28%), Positives = 27/45 (59%), Gaps = 1/45 (2%)
Query: 2 GRRRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNREV 46
G+R E++ K KKK+ + + + + E +K++K+R + RE+
Sbjct: 437 GKRGASEKEKKSKKKQAKQKKNKNKG-KEMRKEDKVRTQTEEREI 480
Score = 24.6 bits (52), Expect = 8.6
Identities = 11/38 (28%), Positives = 22/38 (56%)
Query: 7 EEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNR 44
EEE++ + +G R ++ +SKKK+ + K +N+
Sbjct: 424 EEEEAWLAESEQKGKRGASEKEKKSKKKQAKQKKNKNK 461
>At3g28510 hypothetical protein
Length = 530
Score = 29.6 bits (65), Expect = 0.27
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 3 RRRTEEEDSKK------KKKRGRGGRRRTQPYHESKKKEKMRLKKRNREV 46
R+ EEE+ KK K K+ + + E +KKEK++ K+ N V
Sbjct: 465 RKLAEEEEKKKAEKEAKKMKKAEEAEEKKKKTEEDEKKEKVKAKEENGNV 514
>At2g41960 unknown protein
Length = 1215
Score = 29.6 bits (65), Expect = 0.27
Identities = 15/39 (38%), Positives = 25/39 (63%), Gaps = 1/39 (2%)
Query: 7 EEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNRE 45
EEE+ +K+++ R R+R + E K + K RLK++ RE
Sbjct: 502 EEEEKEKREEEERKERKRIKE-REKKLRRKERLKEKERE 539
>At2g24830 unknown protein
Length = 497
Score = 29.6 bits (65), Expect = 0.27
Identities = 22/69 (31%), Positives = 34/69 (48%), Gaps = 9/69 (13%)
Query: 4 RRTEEEDSKKKKKRGRGG-RRRTQPYHESKKKEKMRLKKR-------NREVLRFIEQFLH 55
R E + K+KKKR RGG R+R + + E+ K K + + N ++ + +H
Sbjct: 349 RNGECKSEKQKKKRSRGGKRKRGKKFAEAAKAAKQEEESKPDLFSLINEQIFPTRHEKVH 408
Query: 56 SSST-NLQN 63
S S N QN
Sbjct: 409 SESVKNRQN 417
>At3g59410 protein kinase like
Length = 1271
Score = 29.3 bits (64), Expect = 0.35
Identities = 18/41 (43%), Positives = 18/41 (43%)
Query: 11 SKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNREVLRFIE 51
SKKKKKRG GRR H S E L L IE
Sbjct: 6 SKKKKKRGGSGRRGQLKDHGSNADEDNELLSEEITALGMIE 46
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.315 0.129 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,146,480
Number of Sequences: 26719
Number of extensions: 84746
Number of successful extensions: 1205
Number of sequences better than 10.0: 149
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 778
Number of HSP's gapped (non-prelim): 385
length of query: 96
length of database: 11,318,596
effective HSP length: 72
effective length of query: 24
effective length of database: 9,394,828
effective search space: 225475872
effective search space used: 225475872
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0022.20