BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0022.11
(334 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g60170 putative protein 273 1e-73
At1g58140 hypothetical protein 265 3e-71
At1g48710 hypothetical protein 265 3e-71
At3g61330 copia-type polyprotein 263 1e-70
At2g20460 putative retroelement pol polyprotein 234 6e-62
At2g15650 putative retroelement pol polyprotein 233 8e-62
At1g70010 hypothetical protein 228 3e-60
At2g16000 putative retroelement pol polyprotein 227 6e-60
At4g10990 putative retrotransposon polyprotein 223 1e-58
At1g31210 putative reverse transcriptase 214 4e-56
At2g16670 putative retroelement pol polyprotein 214 7e-56
At1g59265 polyprotein, putative 213 1e-55
At1g58889 polyprotein, putative 213 1e-55
At1g26990 polyprotein, putative 211 3e-55
At2g15870 putative retroelement pol polyprotein 210 8e-55
At3g45520 copia-like polyprotein 209 1e-54
At2g07550 putative retroelement pol polyprotein 209 1e-54
At3g25450 hypothetical protein 209 2e-54
At2g13940 putative retroelement pol polyprotein 209 2e-54
At4g22040 LTR retrotransposon like protein 207 6e-54
>At3g60170 putative protein
Length = 1339
Score = 273 bits (698), Expect = 1e-73
Identities = 136/314 (43%), Positives = 206/314 (65%), Gaps = 3/314 (0%)
Query: 17 IYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTKE 76
+YVDD+IF ++ +C EF K M EFEMS +G++K+FLGI+V Q +I Q +Y +E
Sbjct: 1019 LYVDDLIFTGSDKAMCDEFKKSMMLEFEMSDLGKMKHFLGIEVKQSDGGIFICQRRYARE 1078
Query: 77 FLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVHL 136
L +F M E K P+ P L K++ KV + +++ ++GSL+YLT +RPD+++ V L
Sbjct: 1079 VLARFGMDESNAVKNPIVPGTKLTKDENGEKVDETMFKQLVGSLMYLTVTRPDLMYGVCL 1138
Query: 137 CAQFQSDPRETHLTTVKRILKYLKGTTNLGLMY--KKSS*YKLSGYCDADYAGDRTERKS 194
++F S+PR +H KRIL+YLKGT LG+ Y +K+ KL + D+DYAGD +R+S
Sbjct: 1139 ISRFMSNPRMSHWLAAKRILRYLKGTVELGIFYRRRKNRSLKLMAFTDSDYAGDLNDRRS 1198
Query: 195 TYGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIS 254
T G + S + WASK+Q +ALST EAEYI+AA C+ Q +W++ LE E + +
Sbjct: 1199 TSGFVFLMASGAICWASKKQPVVALSTTEAEYIAAAFCACQCVWLRKVLEKLGAEEKSAT 1258
Query: 255 -IYCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPL 313
I CDN++ I LSK+ +LH ++KHIEV++H++RD V V+ L++ T+ Q ADIF+KPL
Sbjct: 1259 VINCDNSSTIQLSKHPVLHGKSKHIEVRFHYLRDLVNGDVVKLEYCPTEDQVADIFTKPL 1318
Query: 314 AEDRFKFILKNLNM 327
++F+ + L M
Sbjct: 1319 KLEQFEKLRALLGM 1332
>At1g58140 hypothetical protein
Length = 1320
Score = 265 bits (677), Expect = 3e-71
Identities = 134/322 (41%), Positives = 197/322 (60%), Gaps = 6/322 (1%)
Query: 3 PFYHFSYLQLVSEQI-----YVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGI 57
P+ H Y+++ E I YVDD+IF N + +EF K M EFEM+ +G + Y+LGI
Sbjct: 979 PYEHALYIKIQKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGI 1038
Query: 58 QVDQQPEATYIHQSKYTKEFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMI 117
+V Q+ +I Q Y KE LKKF M + P TPM L K++ V ++ ++
Sbjct: 1039 EVKQEDNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLV 1098
Query: 118 GSLLYLTASRPDILFSVHLCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKL 177
GSL YLT +RPDIL++V + +++ P TH KRIL+Y+KGT N GL Y +S YKL
Sbjct: 1099 GSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKL 1158
Query: 178 SGYCDADYAGDRTERKSTYGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQML 237
GY D+D+ GD +RKST G ++G +W SK+Q + LST EAEY++A C +
Sbjct: 1159 VGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAI 1218
Query: 238 WMKHQLEDYQI-LESNISIYCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLL 296
W+++ L++ + E I+ DN +AI+L+KN + H R+KHI+ +YH+IR+ V K + L
Sbjct: 1219 WLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQL 1278
Query: 297 KFVDTDHQWADIFSKPLAEDRF 318
++V T Q ADIF+KPL + F
Sbjct: 1279 EYVKTHDQVADIFTKPLKREDF 1300
>At1g48710 hypothetical protein
Length = 1352
Score = 265 bits (677), Expect = 3e-71
Identities = 134/322 (41%), Positives = 197/322 (60%), Gaps = 6/322 (1%)
Query: 3 PFYHFSYLQLVSEQI-----YVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGI 57
P+ H Y+++ E I YVDD+IF N + +EF K M EFEM+ +G + Y+LGI
Sbjct: 1011 PYEHALYIKIQKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGI 1070
Query: 58 QVDQQPEATYIHQSKYTKEFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMI 117
+V Q+ +I Q Y KE LKKF M + P TPM L K++ V ++ ++
Sbjct: 1071 EVKQEDNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLV 1130
Query: 118 GSLLYLTASRPDILFSVHLCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKL 177
GSL YLT +RPDIL++V + +++ P TH KRIL+Y+KGT N GL Y +S YKL
Sbjct: 1131 GSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKL 1190
Query: 178 SGYCDADYAGDRTERKSTYGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQML 237
GY D+D+ GD +RKST G ++G +W SK+Q + LST EAEY++A C +
Sbjct: 1191 VGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVVLSTCEAEYVAATSCVCHAI 1250
Query: 238 WMKHQLEDYQI-LESNISIYCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLL 296
W+++ L++ + E I+ DN +AI+L+KN + H R+KHI+ +YH+IR+ V K + L
Sbjct: 1251 WLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQL 1310
Query: 297 KFVDTDHQWADIFSKPLAEDRF 318
++V T Q ADIF+KPL + F
Sbjct: 1311 EYVKTHDQVADIFTKPLKREDF 1332
>At3g61330 copia-type polyprotein
Length = 1352
Score = 263 bits (671), Expect = 1e-70
Identities = 132/322 (40%), Positives = 196/322 (59%), Gaps = 6/322 (1%)
Query: 3 PFYHFSYLQLVSEQI-----YVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGI 57
P+ H Y+++ E I YVDD+IF N + +EF K M EFEM+ +G + Y+LGI
Sbjct: 1011 PYEHALYIKIQKEDILIACLYVDDLIFTGNNPSIFEEFKKEMTKEFEMTDIGLMSYYLGI 1070
Query: 58 QVDQQPEATYIHQSKYTKEFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMI 117
+V Q+ +I Q Y KE LKKF + + P TPM L K++ V ++ ++
Sbjct: 1071 EVKQEDNGIFITQEGYAKEVLKKFKIDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLV 1130
Query: 118 GSLLYLTASRPDILFSVHLCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKL 177
GSL YLT +RPDIL++V + +++ P TH KRIL+Y+KGT N GL Y +S YKL
Sbjct: 1131 GSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKL 1190
Query: 178 SGYCDADYAGDRTERKSTYGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQML 237
GY D+D+ GD +RKST G ++G +W SK+Q + LST EAEY++A C +
Sbjct: 1191 VGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAI 1250
Query: 238 WMKHQLEDYQI-LESNISIYCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLL 296
W+++ L++ + E I+ DN +AI+L+KN + H R+KHI+ +YH+IR+ V K + L
Sbjct: 1251 WLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQL 1310
Query: 297 KFVDTDHQWADIFSKPLAEDRF 318
++V T Q AD F+KPL + F
Sbjct: 1311 EYVKTHDQVADFFTKPLKRENF 1332
>At2g20460 putative retroelement pol polyprotein
Length = 1461
Score = 234 bits (596), Expect = 6e-62
Identities = 119/311 (38%), Positives = 180/311 (57%)
Query: 17 IYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTKE 76
+YVDDI+ S + ++ ++A F++ +G LKYFLG++V + E + Q KY E
Sbjct: 1143 VYVDDIVIASTTEQAAQSLTEALKASFKLRELGPLKYFLGLEVARTSEGISLSQRKYALE 1202
Query: 77 FLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVHL 136
L +M +C P+ PM P L K D +++YR ++G L+YLT +RPDI F+V+
Sbjct: 1203 LLTSADMLDCKPSSIPMTPNIRLSKNDGLLLEDKEMYRRLVGKLMYLTITRPDITFAVNK 1262
Query: 137 CAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKSTY 196
QF S PR HL V ++L+Y+KGT GL Y L GY DAD+ R+ST
Sbjct: 1263 LCQFSSAPRTAHLAAVYKVLQYIKGTVGQGLFYSAEDDLTLKGYTDADWGTCPDSRRSTT 1322
Query: 197 GNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISIY 256
G F+GS+L+SW SK+Q T++ S+AEAEY + A+ S +M W+ L ++ +Y
Sbjct: 1323 GFTMFVGSSLISWRSKKQPTVSRSSAEAEYRALALASCEMAWLSTLLLALRVHSGVPILY 1382
Query: 257 CDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAED 316
D+TAA+ ++ N + H R KHIE+ H +R+ + G L L V T Q ADI +KPL
Sbjct: 1383 SDSTAAVYIATNPVFHERTKHIEIDCHTVREKLDNGQLKLLHVKTKDQVADILTKPLFPY 1442
Query: 317 RFKFILKNLNM 327
+F +L +++
Sbjct: 1443 QFAHLLSKMSI 1453
>At2g15650 putative retroelement pol polyprotein
Length = 1347
Score = 233 bits (595), Expect = 8e-62
Identities = 119/315 (37%), Positives = 186/315 (58%), Gaps = 5/315 (1%)
Query: 17 IYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTKE 76
+YVDD+I NT L F K M+ EFEM+ +G L YFLG++V+Q ++ Q KY +
Sbjct: 1029 LYVDDLIITGNNTHLINTFKKNMKDEFEMTDLGLLNYFLGMEVNQDDSGIFLSQEKYANK 1088
Query: 77 FLKKFNMTECTPAKTPMHPTCI---LEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFS 133
+ KF M E TP+ P +E +D K YR ++G LLYL ASRPD++++
Sbjct: 1089 LIDKFGMKESKSVSTPLTPQGKRKGVEGDDKEFADPTK-YRRIVGGLLYLCASRPDVMYA 1147
Query: 134 VHLCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERK 193
+++ S P H KR+L+Y+KGT+N G+++ +L GY D+D+ G ++K
Sbjct: 1148 SSYLSRYMSSPSIQHYQEAKRVLRYVKGTSNFGVLFTSKETPRLVGYSDSDWGGSLEDKK 1207
Query: 194 STYGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQI-LESN 252
ST G LG + W S +Q T+A STAEAEYI+ + Q +W++ ED+ + +
Sbjct: 1208 STTGYVFTLGLAMFCWQSCKQQTVAQSTAEAEYIAVCAATNQAIWLQRLFEDFGLKFKEG 1267
Query: 253 ISIYCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKP 312
I I CDN +AI++ +N + H R KHIE+KYHF+R+ KG++ L++ + Q AD+ +K
Sbjct: 1268 IPILCDNKSAIAIGRNPVQHRRTKHIEIKYHFVREAEHKGLIQLEYCKGEDQLADVLTKA 1327
Query: 313 LAEDRFKFILKNLNM 327
L+ RF+ + + L +
Sbjct: 1328 LSVSRFEGLRRKLGV 1342
>At1g70010 hypothetical protein
Length = 1315
Score = 228 bits (582), Expect = 3e-60
Identities = 115/312 (36%), Positives = 182/312 (57%), Gaps = 1/312 (0%)
Query: 17 IYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTKE 76
+Y+DDII S N M++ F++ +GELKYFLG+++ + + +I Q KY +
Sbjct: 997 VYIDDIIIASNNDAAVDILKSQMKSFFKLRDLGELKYFLGLEIVRSDKGIHISQRKYALD 1056
Query: 77 FLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVHL 136
L + C P+ PM P+ + + V YR +IG L+YL +RPDI F+V+
Sbjct: 1057 LLDETGQLGCKPSSIPMDPSMVFAHDSGGDFVEVGPYRRLIGRLMYLNITRPDITFAVNK 1116
Query: 137 CAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKSTY 196
AQF PR+ HL V +IL+Y+KGT GL Y +S +L Y +ADY R R+ST
Sbjct: 1117 LAQFSMAPRKAHLQAVYKILQYIKGTIGQGLFYSATSELQLKVYANADYNSCRDSRRSTS 1176
Query: 197 GNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQI-LESNISI 255
G C FLG +L+ W S++Q ++ S+AEAEY S ++ + +++W+ + L++ Q+ L +
Sbjct: 1177 GYCMFLGDSLICWKSRKQDVVSKSSAEAEYRSLSVATDELVWLTNFLKELQVPLSKPTLL 1236
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
+CDN AAI ++ N + H R KHIE H +R+ + KG+ L ++T+ Q AD F+KPL
Sbjct: 1237 FCDNEAAIHIANNHVFHERTKHIESDCHSVRERLLKGLFELYHINTELQIADPFTKPLYP 1296
Query: 316 DRFKFILKNLNM 327
F ++ + +
Sbjct: 1297 SHFHRLISKMGL 1308
>At2g16000 putative retroelement pol polyprotein
Length = 1454
Score = 227 bits (579), Expect = 6e-60
Identities = 121/318 (38%), Positives = 183/318 (57%), Gaps = 3/318 (0%)
Query: 17 IYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTKE 76
+YVDDI+ S + + ++ + F++ +G+LKYFLG++V + I Q KY E
Sbjct: 1136 VYVDDIVIASTSEAAAAQLTEELDQRFKLRDLGDLKYFLGLEVARTTAGISICQRKYALE 1195
Query: 77 FLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVHL 136
L+ M C P PM P + K+D + YR ++G L+YLT +RPDI F+V+
Sbjct: 1196 LLQSTGMLACKPVSVPMIPNLKMRKDDGDLIEDIEQYRRIVGKLMYLTITRPDITFAVNK 1255
Query: 137 CAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKSTY 196
QF S PR THLT R+L+Y+KGT GL Y SS L G+ D+D+A + R+ST
Sbjct: 1256 LCQFSSAPRTTHLTAAYRVLQYIKGTVGQGLFYSASSDLTLKGFADSDWASCQDSRRSTT 1315
Query: 197 GNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISIY 256
F+G +L+SW SK+Q T++ S+AEAEY + A+ + +M+W+ L Q +Y
Sbjct: 1316 SFTMFVGDSLISWRSKKQHTVSRSSAEAEYRALALATCEMVWLFTLLVSLQASPPVPILY 1375
Query: 257 CDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAED 316
D+TAAI ++ N + H R KHI++ H +R+ + G L L V T+ Q ADI +KPL
Sbjct: 1376 SDSTAAIYIATNPVFHERTKHIKLDCHTVRERLDNGELKLLHVRTEDQVADILTKPLFPY 1435
Query: 317 RFKFI---LKNLNMDLCS 331
+F+ + + LN+ CS
Sbjct: 1436 QFEHLKSKMSILNIFSCS 1453
>At4g10990 putative retrotransposon polyprotein
Length = 1203
Score = 223 bits (568), Expect = 1e-58
Identities = 109/314 (34%), Positives = 184/314 (57%), Gaps = 1/314 (0%)
Query: 1 NPPFYHFSYLQLVSEQIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVD 60
N F S ++ +YVDD++ S ++ + +++++EF++ +G ++FLG+++
Sbjct: 705 NTMFVKVSCTSIIVVLVYVDDLMIASNDSSAVENLKELLRSEFKIKDLGPARFFLGLEIA 764
Query: 61 QQPEATYIHQSKYTKEFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSL 120
+ E + Q KY + L+ ++ C P+ PM P L KE + YR ++G L
Sbjct: 765 RSSEGISVCQRKYAQNLLEDVGLSGCKPSSIPMDPNLHLTKEMGTLLPNATSYRELVGRL 824
Query: 121 LYLTASRPDILFSVHLCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGY 180
LYL +RPDI F+VH +QF S P + H+ ++L+YLKG GLMY SS L+G+
Sbjct: 825 LYLCITRPDITFAVHTLSQFLSAPTDIHMQAAHKVLRYLKGNPGQGLMYSASSELCLNGF 884
Query: 181 CDADYAGDRTERKSTYGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMK 240
DAD+ + R+S G C +LG++L++W SK+QS ++ S+ E+EY S A + +++W++
Sbjct: 885 SDADWGTCKDSRRSVTGFCIYLGTSLITWKSKKQSVVSRSSTESEYRSLAQATCEIIWLQ 944
Query: 241 HQLEDYQI-LESNISIYCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFV 299
L+D + + ++CDN +A+ L+ N + H R KHIE+ H +RD ++ G L V
Sbjct: 945 QLLKDLHVTMTCPAKLFCDNKSALHLATNPVFHERTKHIEIDCHTVRDQIKAGKLKTLHV 1004
Query: 300 DTDHQWADIFSKPL 313
T +Q ADI +KPL
Sbjct: 1005 PTGNQLADILTKPL 1018
>At1g31210 putative reverse transcriptase
Length = 1415
Score = 214 bits (546), Expect = 4e-56
Identities = 109/303 (35%), Positives = 176/303 (57%), Gaps = 3/303 (0%)
Query: 17 IYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTKE 76
+YVDDI+ ++ L ++ + ++ F M +G +YFLGIQ++ ++HQ+ Y +
Sbjct: 1052 LYVDDILLTGSDQSLLEDLLQALKNRFSMKDLGPPRYFLGIQIEDYANGLFLHQTAYATD 1111
Query: 77 FLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVHL 136
L++ M++C P TP+ ++ A+ +R + G L YLT +RPDI F+V+
Sbjct: 1112 ILQQAGMSDCNPMPTPLPQQLDNLNSELFAE--PTYFRSLAGKLQYLTITRPDIQFAVNF 1169
Query: 137 CAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKSTY 196
Q P + +KRIL+Y+KGT +GL K++S LS Y D+D+AG + R+ST
Sbjct: 1170 ICQRMHSPTTSDFGLLKRILRYIKGTIGMGLPIKRNSTLTLSAYSDSDHAGCKNTRRSTT 1229
Query: 197 GNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILE-SNISI 255
G C LGSNL+SW++KRQ T++ S+ EAEY + + ++ W+ L D I + +
Sbjct: 1230 GFCILLGSNLISWSAKRQPTVSNSSTEAEYRALTYAAREITWISFLLRDLGIPQYLPTQV 1289
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
YCDN +A+ LS N LH+R+KH + YH+IR+ V G++ + + Q AD+F+K L
Sbjct: 1290 YCDNLSAVYLSANPALHNRSKHFDTDYHYIREQVALGLIETQHISATFQLADVFTKSLPR 1349
Query: 316 DRF 318
F
Sbjct: 1350 RAF 1352
>At2g16670 putative retroelement pol polyprotein
Length = 1333
Score = 214 bits (544), Expect = 7e-56
Identities = 112/315 (35%), Positives = 177/315 (55%), Gaps = 6/315 (1%)
Query: 17 IYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTKE 76
IYVDD+I + ++F + + + F M +G LKYFLGI+V + YI Q KY +
Sbjct: 1015 IYVDDLIITGNSQRATQQFKEYLASCFHMKDLGPLKYFLGIEVARSTTGIYICQRKYALD 1074
Query: 77 FLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVHL 136
+ + + PA P+ L + YR ++G L+YL +R D+ FSVH+
Sbjct: 1075 IISETGLLGVKPANFPLEQNHKLGLSTSPLLTDPQRYRRLVGRLIYLAVTRLDLAFSVHI 1134
Query: 137 CAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKSTY 196
A+F +PRE H R+++YLK G+ ++S ++++G+CD+D+AGD R+S
Sbjct: 1135 LARFMQEPREDHWAAALRVVRYLKADPGQGVFLRRSGDFQITGWCDSDWAGDPMSRRSVT 1194
Query: 197 GNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISIY 256
G G + +SW +K+Q T++ S+AEAEY + + ++++LW+K L + I
Sbjct: 1195 GYFVQFGDSPISWKTKKQDTVSKSSAEAEYRAMSFLASELLWLKQLLFSLGVSHVQPMIM 1254
Query: 257 -CDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
CD+ +AI ++ N + H R KHIE+ YHF+RD KGV+ + V T Q ADIF+KPL
Sbjct: 1255 CCDSKSAIYIATNPVFHERTKHIEIDYHFVRDEFVKGVITPRHVGTTSQLADIFTKPLGR 1314
Query: 316 D-----RFKFILKNL 325
D R K ++NL
Sbjct: 1315 DCFSAFRIKLGIRNL 1329
>At1g59265 polyprotein, putative
Length = 1466
Score = 213 bits (542), Expect = 1e-55
Identities = 120/304 (39%), Positives = 166/304 (54%), Gaps = 1/304 (0%)
Query: 17 IYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTKE 76
+YVDDI+ + L + F + EL YFLGI+ + P ++ Q +Y +
Sbjct: 1149 VYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILD 1208
Query: 77 FLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVHL 136
L + NM P TPM P+ L + YRG++GSL YL +RPDI ++V+
Sbjct: 1209 LLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNR 1268
Query: 137 CAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKSTY 196
+QF P E HL +KRIL+YL GT N G+ KK + L Y DAD+AGD+ + ST
Sbjct: 1269 LSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTN 1328
Query: 197 GNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQI-LESNISI 255
G +LG + +SW+SK+Q + S+ EAEY S A S++M W+ L + I L I
Sbjct: 1329 GYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVI 1388
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
YCDN A L N + HSR KHI + YHFIR+ VQ G L + V T Q AD +KPL+
Sbjct: 1389 YCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSR 1448
Query: 316 DRFK 319
F+
Sbjct: 1449 TAFQ 1452
>At1g58889 polyprotein, putative
Length = 1466
Score = 213 bits (542), Expect = 1e-55
Identities = 120/304 (39%), Positives = 166/304 (54%), Gaps = 1/304 (0%)
Query: 17 IYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTKE 76
+YVDDI+ + L + F + EL YFLGI+ + P ++ Q +Y +
Sbjct: 1149 VYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILD 1208
Query: 77 FLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVHL 136
L + NM P TPM P+ L + YRG++GSL YL +RPDI ++V+
Sbjct: 1209 LLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNR 1268
Query: 137 CAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKSTY 196
+QF P E HL +KRIL+YL GT N G+ KK + L Y DAD+AGD+ + ST
Sbjct: 1269 LSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTN 1328
Query: 197 GNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQI-LESNISI 255
G +LG + +SW+SK+Q + S+ EAEY S A S++M W+ L + I L I
Sbjct: 1329 GYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVI 1388
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
YCDN A L N + HSR KHI + YHFIR+ VQ G L + V T Q AD +KPL+
Sbjct: 1389 YCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSR 1448
Query: 316 DRFK 319
F+
Sbjct: 1449 TAFQ 1452
>At1g26990 polyprotein, putative
Length = 1436
Score = 211 bits (538), Expect = 3e-55
Identities = 107/304 (35%), Positives = 178/304 (58%), Gaps = 1/304 (0%)
Query: 17 IYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTKE 76
+YVDDI+ S E + + + F++ +GE K+FLGI++ + + + Q KY +
Sbjct: 1117 VYVDDILIASTTEAASAELTSQLSSFFQLRDLGEPKFFLGIEIARNADGISLCQRKYVLD 1176
Query: 77 FLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVHL 136
L + ++C P+ PM P L K+ + K YR ++G L YL +RPDI F+V
Sbjct: 1177 LLASSDFSDCKPSSIPMEPNQKLSKDTGTLLEDGKQYRRILGKLQYLCLTRPDINFAVSK 1236
Query: 137 CAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKSTY 196
AQ+ S P + HL + +IL+YLKGT GL Y + + L G+ D+D+ R+
Sbjct: 1237 LAQYSSAPTDIHLQALHKILRYLKGTIGQGLFYGADTNFDLRGFSDSDWQTCPDTRRCVT 1296
Query: 197 GNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIS-I 255
G F+G++LVSW SK+Q +++S+AEAEY + ++ + +++W+ + L ++I ++ + +
Sbjct: 1297 GFAIFVGNSLVSWRSKKQDVVSMSSAEAEYRAMSVATKELIWLGYILTAFKIPFTHPAYL 1356
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
YCDN AA+ ++ N + H R KHIE H +R+ ++ G+L FV TD+Q AD +KPL
Sbjct: 1357 YCDNEAALHIANNSVFHERTKHIENDCHKVRECIEAGILKTIFVRTDNQLADTLTKPLYP 1416
Query: 316 DRFK 319
F+
Sbjct: 1417 KPFR 1420
>At2g15870 putative retroelement pol polyprotein
Length = 1264
Score = 210 bits (535), Expect = 8e-55
Identities = 111/311 (35%), Positives = 174/311 (55%)
Query: 17 IYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTKE 76
+YVDDI+ S N + S+ +Q F++ +G+LKYFLG+++ + + Q KY E
Sbjct: 946 VYVDDIVIASTNEAAAVQLSQDLQNLFKLRDLGDLKYFLGLEITRTEAGISLCQRKYALE 1005
Query: 77 FLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVHL 136
L M C PM P L K D ++ YR ++G+L+YLT +RPDI F+V+
Sbjct: 1006 LLASTGMINCKLVSVPMVPNLKLMKVDGELLEDREQYRRIVGTLMYLTITRPDITFAVNK 1065
Query: 137 CAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKSTY 196
QF P HL R+L+Y+KGT GL Y SS L G+ D+D+A R ST
Sbjct: 1066 LCQFSYAPTTAHLQAAHRVLQYIKGTVGQGLFYSASSDLTLKGFADSDWASCPDSRHSTT 1125
Query: 197 GNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISIY 256
G F+G +L+S SK+Q ++ S+AEAEY + A+ + +++W+ L + ++
Sbjct: 1126 GFTMFVGDSLISLRSKKQHVVSRSSAEAEYRALALATCELVWLHTLLASLTAATTIPILF 1185
Query: 257 CDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAED 316
D+TAAI ++ N + H R KHIE+ H +R+ + G L L V T+ Q ADI +KPL +
Sbjct: 1186 SDSTAAIYIAINPVFHERTKHIEIDCHTVREKIDDGELKLLHVRTEDQVADIMTKPLFPN 1245
Query: 317 RFKFILKNLNM 327
+F+ + +++
Sbjct: 1246 QFEHLKSKMSI 1256
>At3g45520 copia-like polyprotein
Length = 1363
Score = 209 bits (533), Expect = 1e-54
Identities = 113/319 (35%), Positives = 180/319 (56%), Gaps = 9/319 (2%)
Query: 18 YVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQV--DQQPEATYIHQSKYTK 75
YVDD++ + N K + +FEM +G K LGI++ D++ ++ Q Y
Sbjct: 1042 YVDDMLVAANNMQAIDALKKELSIKFEMKDLGAAKKILGIEIIIDREAGVLWLSQESYLN 1101
Query: 76 EFLKKFNMTECTPAKTPMHP-----TCILEKEDVSAKVCQKL-YRGMIGSLLY-LTASRP 128
+ LK FNM E PA TP+ + EK + + Y +GS++Y + +RP
Sbjct: 1102 KVLKTFNMLESKPALTPLGAHLKMKSATEEKLSTEEEYMNSVPYSSAVGSIMYAMIGTRP 1161
Query: 129 DILFSVHLCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGD 188
D+ + V + ++F S P + H VK +L+Y+KGT + L YK++S + + GYCDADYA D
Sbjct: 1162 DLAYPVGVVSRFMSQPAKEHWLGVKWVLRYIKGTVDTRLCYKRNSDFSICGYCDADYAAD 1221
Query: 189 RTERKSTYGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQI 248
+R+S G LG N +SW S Q +A S+ E EY+S + +W+K L+D+
Sbjct: 1222 LDKRRSITGLVFTLGGNTISWKSGLQRVVAQSSTECEYMSLTEAVKEAIWLKGLLKDFGY 1281
Query: 249 LESNISIYCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADI 308
+ N+ I+CD+ +AI+LSKN + H R KHI+VK+HFIR+ + G + + + T+ ADI
Sbjct: 1282 EQKNVEIFCDSQSAIALSKNNVHHERTKHIDVKFHFIREIIADGKVEVSKISTEKNPADI 1341
Query: 309 FSKPLAEDRFKFILKNLNM 327
F+K L ++F+ L L +
Sbjct: 1342 FTKVLPVNKFQTALDFLRV 1360
>At2g07550 putative retroelement pol polyprotein
Length = 1356
Score = 209 bits (533), Expect = 1e-54
Identities = 117/323 (36%), Positives = 178/323 (54%), Gaps = 15/323 (4%)
Query: 17 IYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQV--DQQPEATYIHQSKYT 74
IYVDDI+ S N + FEM +G K LG+++ D+ ++ Q Y
Sbjct: 1034 IYVDDILVASKNKEAITALKANLGMRFEMKDLGAAKKILGMEIIRDRTLGVLWLSQEGYL 1093
Query: 75 KEFLKKFNMTECTPAKTPMHPTC---------ILEKEDVSAKVCQKLYRGMIGSLLY-LT 124
+ L+ +NM E PA TP+ ++ ED V Y +GS++Y +
Sbjct: 1094 NKILETYNMAEAKPAMTPLGAHFKFQAATEQKLIRDEDFMKSVP---YSSAVGSIMYAML 1150
Query: 125 ASRPDILFSVHLCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDAD 184
+RPD+ + V + ++F S P + H VK +L+Y+KGT L YKKSS + + GYCDAD
Sbjct: 1151 GTRPDLAYPVGIISRFMSQPIKEHWLGVKWVLRYIKGTLKTRLCYKKSSSFSIVGYCDAD 1210
Query: 185 YAGDRTERKSTYGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLE 244
YA D +R+S G LG N +SW S Q +A ST E+EY+S + +W+K L+
Sbjct: 1211 YAADLDKRRSITGLVFTLGGNTISWKSGLQRVVAQSTTESEYMSLTEAVKEAIWLKGLLK 1270
Query: 245 DYQILESNISIYCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQ 304
D+ + ++ I+CD+ +AI+LSKN + H R KHI+VKYHFIR+ + G + + + T+
Sbjct: 1271 DFGYEQKSVEIFCDSQSAIALSKNNVHHERTKHIDVKYHFIREIISDGTVEVLKISTEKN 1330
Query: 305 WADIFSKPLAEDRFKFILKNLNM 327
ADIF+K LA +F+ L L +
Sbjct: 1331 PADIFTKVLAVSKFQAALNLLRV 1353
>At3g25450 hypothetical protein
Length = 1343
Score = 209 bits (532), Expect = 2e-54
Identities = 109/303 (35%), Positives = 182/303 (59%), Gaps = 1/303 (0%)
Query: 17 IYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTKE 76
+YVDD++ +N + F K M +FEMS +G+L Y+LGI+V Q + + Q +Y K+
Sbjct: 1012 VYVDDLLVTGSNLDIILNFKKGMVGKFEMSDLGKLTYYLGIEVLQSKDGITLKQERYAKK 1071
Query: 77 FLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVHL 136
L++ M++C TPM + L K ++ + YR IG L YL +RPD+ ++V +
Sbjct: 1072 ILEEAGMSKCNTVNTPMIASLELSKAQDEKRIDETDYRRNIGCLRYLLHTRPDLSYNVGI 1131
Query: 137 CAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKSTY 196
+++ +PRE+H +K+IL+YL+GTT+ GL +KK L GY D+ + D + KST
Sbjct: 1132 LSRYLQEPRESHGAALKQILRYLQGTTSHGLYFKKGENAGLIGYSDSSHNVDLDDGKSTG 1191
Query: 197 GNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILE-SNISI 255
G+ +L ++W S++Q + LS+ EAE+++A + Q +W++ L + E ++I
Sbjct: 1192 GHIFYLNDCPITWCSQKQQVVTLSSCEAEFMAATEAAKQAIWLQELLAEVIGTECEKVTI 1251
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
DN +AI+L+KN + H R+KHI +YHFIR+ V+ G + ++ V Q ADI +K L +
Sbjct: 1252 RVDNKSAIALTKNPVFHGRSKHIHRRYHFIRECVENGQIEVEHVPGVRQKADILTKALGK 1311
Query: 316 DRF 318
+F
Sbjct: 1312 IKF 1314
>At2g13940 putative retroelement pol polyprotein
Length = 1501
Score = 209 bits (532), Expect = 2e-54
Identities = 106/312 (33%), Positives = 175/312 (55%), Gaps = 1/312 (0%)
Query: 17 IYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTKE 76
IYVDD++ + ++ ++F + F M +G+LKYFLGI+V + PE ++ Q KY +
Sbjct: 1183 IYVDDLLICGNDGYMLQKFKDYLSRCFSMKDLGKLKYFLGIEVSRGPEGIFLSQRKYALD 1242
Query: 77 FLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVHL 136
+ PA TP+ L +D K YR ++G LLYL +RP++ +SVH+
Sbjct: 1243 VIADSGNLGSRPAHTPLEQNHHLASDDGPLLSDPKPYRRLVGRLLYLLHTRPELSYSVHV 1302
Query: 137 CAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKSTY 196
AQF +PRE H R+++YLKG+ G++ L YCD+D+ R+S
Sbjct: 1303 LAQFMQNPREAHFDAALRVVRYLKGSPGQGILLNADPDLTLEVYCDSDWQSCPLTRRSIS 1362
Query: 197 GNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESN-ISI 255
LG + +SW +K+Q T++ S+AEAEY + + ++ W++ L++ I +S +
Sbjct: 1363 AYVVLLGGSPISWKTKKQDTVSHSSAEAEYRAMSYALKEIKWLRKLLKELGIEQSTPARL 1422
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
YCD+ AAI ++ N + H R KHIE H +RD V+ G++ + V T Q AD+F+K L
Sbjct: 1423 YCDSKAAIHIAANPVFHERTKHIESDCHSVRDAVRDGIITTQHVRTTEQLADVFTKALGR 1482
Query: 316 DRFKFILKNLNM 327
++F +++ L +
Sbjct: 1483 NQFLYLMSKLGV 1494
>At4g22040 LTR retrotransposon like protein
Length = 1109
Score = 207 bits (527), Expect = 6e-54
Identities = 105/312 (33%), Positives = 172/312 (54%), Gaps = 1/312 (0%)
Query: 17 IYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTKE 76
+YVDD+I + +F +++ F M +G LKYFLGI+V + + Y+ Q KY +
Sbjct: 791 VYVDDLIISGSCPDAVAQFKSYLESCFHMKDLGLLKYFLGIEVSRNAQGFYLSQRKYVLD 850
Query: 77 FLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVHL 136
+ + + P+ P+ L YR ++G L+YL +RP++ +SVH
Sbjct: 851 IISEMGLLGARPSAFPLEQNHKLSLSTSPLLSDSSRYRRLVGRLIYLAVTRPELSYSVHT 910
Query: 137 CAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKSTY 196
AQF +PR+ H R+++YLK G++ +S +++G+CD+DYA R+S
Sbjct: 911 LAQFMQNPRQDHWNAAIRVVRYLKSNPGQGILLSSTSTLQINGWCDSDYAACPLTRRSLT 970
Query: 197 GNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILE-SNISI 255
G LG +SW +K+Q TI+ S+AEAEY + A + +++W+K L D + + I
Sbjct: 971 GYFVQLGDTPISWKTKKQPTISRSSAEAEYRAMAFLTQELMWLKRVLYDLGVSHVQAMRI 1030
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
+ D+ +AI+LS N + H R KH+EV HFIRD + G++ FV + Q ADI +K L E
Sbjct: 1031 FSDSKSAIALSVNPVQHERTKHVEVDCHFIRDAILDGIIATSFVPSHKQLADILTKALGE 1090
Query: 316 DRFKFILKNLNM 327
++ L+ L +
Sbjct: 1091 KEVRYFLRKLGI 1102
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.325 0.137 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,230,654
Number of Sequences: 26719
Number of extensions: 279224
Number of successful extensions: 968
Number of sequences better than 10.0: 102
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 736
Number of HSP's gapped (non-prelim): 125
length of query: 334
length of database: 11,318,596
effective HSP length: 100
effective length of query: 234
effective length of database: 8,646,696
effective search space: 2023326864
effective search space used: 2023326864
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0022.11