BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0021.5
(210 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g62440 putative extensin-like protein (gnl|PID|e1310400 33 0.11
At1g31810 hypothetical protein 33 0.14
At5g39760 unknown protein 32 0.19
At5g22560 putative protein 31 0.41
At3g50140 putative protein 31 0.41
At2g27390 pseudogene 31 0.41
At4g00850 unknown protein 31 0.54
At2g15880 unknown protein 30 0.70
At1g61080 hypothetical protein 30 0.70
At1g54215 putative protein 30 0.70
At1g49490 hypothetical protein 30 0.70
At1g34440 hypothetical protein 30 0.70
At1g21310 extensin 3 (atExt3)(AtExt5) 30 0.70
At4g15160 cell wall protein like 30 1.2
At3g24540 protein kinase, putative 30 1.2
At3g24400 protein kinase, putative 30 1.2
At3g22120 unknown protein 30 1.2
At1g69440 hypothetical protein 30 1.2
At1g68690 protein kinase, putative 30 1.2
At1g26150 Pto kinase interactor, putative 29 1.6
>At1g62440 putative extensin-like protein (gnl|PID|e1310400
Length = 786
Score = 33.1 bits (74), Expect = 0.11
Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 7/66 (10%)
Query: 44 RKPPPPRTLLLPFPLFQPRAPLPPCLLHEAMKPPRNPSRRYLQSPISG---EPLTIWRNQ 100
+ PPPP + P P P P H P ++P Y P G P N
Sbjct: 691 KSPPPPSPVYYPPVTQSPPPPSTPVEYHPPASPNQSPPPEYQSPPPKGCNDSP----SND 746
Query: 101 HHHCTP 106
HH+ TP
Sbjct: 747 HHYQTP 752
Score = 30.0 bits (66), Expect = 0.92
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 43 TRKPPPPRTLLLPFPLFQPRAPLPPCLLHEAMKPPRNPSRRYLQSPISGEPLTIWRNQ 100
T+ PPPP+ P P +P PP + + PP P+ QSP P T + Q
Sbjct: 535 TQSPPPPKYEQTPSPREYYPSPSPPYYQYTSSPPP--PTYYATQSPPPPPPPTYYAVQ 590
>At1g31810 hypothetical protein
Length = 1201
Score = 32.7 bits (73), Expect = 0.14
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 46 PPPPRTLLLPFPLFQPRAPLPPCLLHEAMKPPRNPSRRYLQSPISGEP 93
PPP + +P PL QP P PP PP PS R + SP + P
Sbjct: 579 PPPLPSRSIPPPLAQPPPPRPP------PPPPPPPSSRSIPSPSAPPP 620
>At5g39760 unknown protein
Length = 334
Score = 32.3 bits (72), Expect = 0.19
Identities = 34/130 (26%), Positives = 46/130 (35%), Gaps = 33/130 (25%)
Query: 37 DTRKAATRKPPPPRTLLLPFPLFQPRAPLPPCLLHEAMKPPRNPSRRYLQSPISGEPLTI 96
D +++ PPPP T + P + P PP PP P +SP S P I
Sbjct: 109 DNNNDSSQIPPPPSTAVEYQPHHRHHPPPPP--------PPPPP-----RSPNSASPPPI 155
Query: 97 WRNQHHHCTPLTVRNKTPQEIFRFAALRRRASALQLAISPSFGLRWPRNHHHH---ALHG 153
+ + L+ N + F+ L A NHHHH LHG
Sbjct: 156 --SSSYMLLSLSGTNNNNNNLASFSDLNFSAG---------------NNHHHHHQHTLHG 198
Query: 154 ERNKTLYSFS 163
R + FS
Sbjct: 199 SRKRFRTKFS 208
>At5g22560 putative protein
Length = 517
Score = 31.2 bits (69), Expect = 0.41
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 43 TRKPPPPRTLLLPFPLFQPRAPLPPCLLHEAMKPPRNPSRRYLQSPISGEPLTI 96
T PPP T P P P PP L KP P RR+L+ +S L +
Sbjct: 296 TSTPPPIETKTPPLP------PPPPTLTQPHPKPLTPPPRRFLKLVVSARKLRL 343
>At3g50140 putative protein
Length = 508
Score = 31.2 bits (69), Expect = 0.41
Identities = 27/80 (33%), Positives = 33/80 (40%), Gaps = 3/80 (3%)
Query: 39 RKAATRKPPPPRTLLLPFPLFQPRAPLPPCLLHEAMKP-PRNPSRRYLQSPISGEPLTIW 97
R+ PPPPR L+LP PL P P PP L P P RR + P+ W
Sbjct: 7 RRPPPPPPPPPRLLVLP-PLPPPPPPPPPQLPFGPKLPFPHIIIRRKARRNYQLRPMLTW 65
Query: 98 RNQHHHC-TPLTVRNKTPQE 116
L RN+ P+E
Sbjct: 66 YFLTFMMRQKLQTRNQQPEE 85
>At2g27390 pseudogene
Length = 134
Score = 31.2 bits (69), Expect = 0.41
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 45 KPPPPRTLLLPFPLFQPRA--PLPPCLLHEAMKPPRNP 80
+PP P LP PLF P LPP LL +PPR P
Sbjct: 66 EPPLPPRFELPPPLFPPPPLPRLPPPLLPPPEEPPREP 103
>At4g00850 unknown protein
Length = 223
Score = 30.8 bits (68), Expect = 0.54
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 54 LPFPLFQPRAPLPPCLLHEAMKPPRNPSRRYLQSPISGEPLTIWRN------QHHHCTPL 107
+P +F PR PL H+ + P + ++ +Q + P+ + N HHH T L
Sbjct: 118 IPPGIFPPRGPLQFGSPHQFLDPQQQLHQQAMQGHMGIRPMGLNNNNGLQHQMHHHETAL 177
Query: 108 TVRNKTPQE 116
N P +
Sbjct: 178 AANNAGPND 186
>At2g15880 unknown protein
Length = 727
Score = 30.4 bits (67), Expect = 0.70
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 45 KPPPPRTLLLPFPLFQPRAPLPPCLLHEAMKPPRNPSRRYLQSPISGE 92
K PPP + P PL P+ PP PPR PS+ P S E
Sbjct: 659 KSPPPPPVYSP-PLLPPKMSSPPTQTPVNSPPPRTPSQTVEAPPPSEE 705
Score = 26.9 bits (58), Expect = 7.8
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 143 PRNHHHHALHGERNKTLYSFSSPATLPPLAAVLRHLLQPISPEKSAE 189
P+ HHH +H SSP T PP+ + + +P P++S +
Sbjct: 436 PQQPHHHVVHSPPPA-----SSPPTSPPVHSTPSPVHKPQPPKESPQ 477
>At1g61080 hypothetical protein
Length = 907
Score = 30.4 bits (67), Expect = 0.70
Identities = 18/53 (33%), Positives = 25/53 (46%), Gaps = 5/53 (9%)
Query: 46 PPPPRTLLLPFPLF--QPRAPLPPCLL---HEAMKPPRNPSRRYLQSPISGEP 93
PPPP ++P F P PLPP ++ H A PP P+ + L+ P
Sbjct: 459 PPPPPPAVMPLKHFAPPPPPPLPPAVMPLKHFAPPPPTPPAFKPLKGSAPPPP 511
Score = 28.1 bits (61), Expect = 3.5
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 46 PPPPRTLLLPFPLFQPRAPLPPCLLHEAMKPPRNPSRRYLQSPISGEP 93
PPPP + L P P P + + A PP P R + + +G P
Sbjct: 591 PPPPPPMPLANGATPPPPPPPMAMANGAAGPPPPPPRMGMANGAAGPP 638
>At1g54215 putative protein
Length = 169
Score = 30.4 bits (67), Expect = 0.70
Identities = 20/48 (41%), Positives = 24/48 (49%), Gaps = 2/48 (4%)
Query: 46 PPPPRTLLLPFPLFQPRAPLPPCLLHEAMKPP-RNPSRRYLQSPISGE 92
PPPP T ++ PL P P PP KPP +N RR+ P S E
Sbjct: 77 PPPPVTDMIK-PLSSPPPPQPPPRSQPPPKPPQKNLPRRHPPPPRSPE 123
>At1g49490 hypothetical protein
Length = 847
Score = 30.4 bits (67), Expect = 0.70
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 46 PPPPRTLLLPFPLFQPRAPLPPCLLHEAMKPP 77
PPPP P P+ P P PP +H PP
Sbjct: 567 PPPPHVYSPPPPVASPPPPSPPPPVHSPPPPP 598
>At1g34440 hypothetical protein
Length = 157
Score = 30.4 bits (67), Expect = 0.70
Identities = 18/55 (32%), Positives = 31/55 (55%), Gaps = 4/55 (7%)
Query: 154 ERNKTLYSFSSPAT---LPPLAAVLRHLLQPIS-PEKSAELVLKIQAFWVGFVDF 204
ERN+ L+S +S T + + ++R L P+S ++S L + A W+GF+ F
Sbjct: 36 ERNQRLHSATSRPTTSIIKEIKMIVRTRLDPLSRAQRSTPPALTLLATWLGFIGF 90
>At1g21310 extensin 3 (atExt3)(AtExt5)
Length = 349
Score = 30.4 bits (67), Expect = 0.70
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 44 RKPPPPRTLLLPFPLFQPRAPLPPCLLHEAMKPPRNPSRRYLQSPISGEPLTIWRNQHHH 103
+ PPPP P P++ PP H K P P + Y P+ P ++ +
Sbjct: 123 KSPPPPVKHYSPPPVYHSP---PPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYK 179
Query: 104 CTPLTVRNKTPQEIF 118
P V++ +P ++
Sbjct: 180 SPPPPVKHYSPPPVY 194
Score = 30.4 bits (67), Expect = 0.70
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 44 RKPPPPRTLLLPFPLFQPRAPLPPCLLHEAMKPPRNPSRRYLQSPISGEPLTIWRNQHHH 103
+ PPPP P P++ PP H K P P + Y P+ P ++ +
Sbjct: 95 KSPPPPVKHYSPPPVYHSP---PPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYK 151
Query: 104 CTPLTVRNKTPQEIF 118
P V++ +P ++
Sbjct: 152 SPPPPVKHYSPPPVY 166
Score = 30.4 bits (67), Expect = 0.70
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 44 RKPPPPRTLLLPFPLFQPRAPLPPCLLHEAMKPPRNPSRRYLQSPISGEPLTIWRNQHHH 103
+ PPPP P P++ PP H K P P + Y P+ P ++ +
Sbjct: 207 KSPPPPVKHYSPPPVYHSP---PPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYK 263
Query: 104 CTPLTVRNKTPQEIF 118
P V++ +P ++
Sbjct: 264 SPPPPVKHYSPPPVY 278
Score = 30.4 bits (67), Expect = 0.70
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 44 RKPPPPRTLLLPFPLFQPRAPLPPCLLHEAMKPPRNPSRRYLQSPISGEPLTIWRNQHHH 103
+ PPPP P P++ PP H K P P + Y P+ P ++ +
Sbjct: 179 KSPPPPVKHYSPPPVYHSP---PPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYK 235
Query: 104 CTPLTVRNKTPQEIF 118
P V++ +P ++
Sbjct: 236 SPPPPVKHYSPPPVY 250
Score = 30.4 bits (67), Expect = 0.70
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 44 RKPPPPRTLLLPFPLFQPRAPLPPCLLHEAMKPPRNPSRRYLQSPISGEPLTIWRNQHHH 103
+ PPPP P P++ PP H K P P + Y P+ P ++ +
Sbjct: 235 KSPPPPVKHYSPPPVYHSP---PPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYK 291
Query: 104 CTPLTVRNKTPQEIF 118
P V++ +P ++
Sbjct: 292 SPPPPVKHYSPPPVY 306
Score = 30.4 bits (67), Expect = 0.70
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 44 RKPPPPRTLLLPFPLFQPRAPLPPCLLHEAMKPPRNPSRRYLQSPISGEPLTIWRNQHHH 103
+ PPPP P P++ PP H K P P + Y P+ P ++ +
Sbjct: 67 KSPPPPVKHYSPPPVYHSP---PPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYK 123
Query: 104 CTPLTVRNKTPQEIF 118
P V++ +P ++
Sbjct: 124 SPPPPVKHYSPPPVY 138
Score = 30.4 bits (67), Expect = 0.70
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 44 RKPPPPRTLLLPFPLFQPRAPLPPCLLHEAMKPPRNPSRRYLQSPISGEPLTIWRNQHHH 103
+ PPPP P P++ PP H K P P + Y P+ P ++ +
Sbjct: 151 KSPPPPVKHYSPPPVYHSP---PPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYK 207
Query: 104 CTPLTVRNKTPQEIF 118
P V++ +P ++
Sbjct: 208 SPPPPVKHYSPPPVY 222
Score = 27.7 bits (60), Expect = 4.6
Identities = 24/107 (22%), Positives = 45/107 (41%), Gaps = 9/107 (8%)
Query: 20 MKNKISTAVVLTRCYRDDTRKAA----TRKPPPPRTLLLPFPLFQP----RAPLPPCLLH 71
M + ++T +VLT ++ A + PPP + P + P +P PP +
Sbjct: 5 MASLVATLLVLTISLTFVSQSTANYFYSSPPPPVKHYTPPVKHYSPPPVYHSPPPPKKHY 64
Query: 72 EAMKPPRNPSRRYLQSPISGEPLTIWRNQHHHCTPLTVRNKTPQEIF 118
E PP P + Y P+ P ++ + P V++ +P ++
Sbjct: 65 EYKSPPP-PVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVY 110
Score = 27.3 bits (59), Expect = 6.0
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 44 RKPPPPRTLLLPFPLFQPRAPLPPCLLHEAMKPPRNPSRRYLQSPISGEP 93
+ PPPP P P++ PP H K P P + Y P+ P
Sbjct: 263 KSPPPPVKHYSPPPVYHSP---PPPKKHYVYKSPPPPVKHYSPPPVYHSP 309
>At4g15160 cell wall protein like
Length = 428
Score = 29.6 bits (65), Expect = 1.2
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 43 TRKPPPPRTLLLPFPLFQPRAPLPP 67
T KPPPP + P P P AP PP
Sbjct: 142 TVKPPPPPVVTPPPPTPTPEAPCPP 166
>At3g24540 protein kinase, putative
Length = 509
Score = 29.6 bits (65), Expect = 1.2
Identities = 13/42 (30%), Positives = 20/42 (46%)
Query: 47 PPPRTLLLPFPLFQPRAPLPPCLLHEAMKPPRNPSRRYLQSP 88
PPP + +P PLF P P ++ ++ PP P +P
Sbjct: 42 PPPPQVFVPEPLFSEPPPPPKAPVNVSLSPPPPPRSPSTSTP 83
>At3g24400 protein kinase, putative
Length = 694
Score = 29.6 bits (65), Expect = 1.2
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 46 PPPPRTLLLPFPLFQPRAPLPPCLLHEAMKP--PRNPSRRYLQSPISGEP 93
PPPP T + P P P P PP L + P P PS SP + P
Sbjct: 57 PPPPPTTVPPIP---PSTPSPPPPLTPSPLPPSPTTPSPPLTPSPTTPSP 103
>At3g22120 unknown protein
Length = 351
Score = 29.6 bits (65), Expect = 1.2
Identities = 22/76 (28%), Positives = 29/76 (37%), Gaps = 1/76 (1%)
Query: 40 KAATRKPPPPRTLLLPFPLFQPRAPLPPCLLHEAM-KPPRNPSRRYLQSPISGEPLTIWR 98
K T KPP P+ P P +P PP + KPP P + P + P + +
Sbjct: 110 KPPTVKPPHPKPPTKPHPHPKPPIVKPPTKPPPSTPKPPTKPPPSTPKPPTTKPPPSTPK 169
Query: 99 NQHHHCTPLTVRNKTP 114
HH P TP
Sbjct: 170 PPHHKPPPTPCPPPTP 185
>At1g69440 hypothetical protein
Length = 990
Score = 29.6 bits (65), Expect = 1.2
Identities = 27/95 (28%), Positives = 38/95 (39%), Gaps = 17/95 (17%)
Query: 46 PPPPRTLLLPF-PLFQPRAPLPPCLLHEAMKPPRNPSRRYLQSPISGEPLTIWRNQHHHC 104
PPPP LLP P P PLP PP + +R + P+S + + QH
Sbjct: 79 PPPPPPHLLPLSPPLPPLLPLP---------PPHSMTRFHKSLPVS--QVVERKQQHQQK 127
Query: 105 TPLTVRNKTPQEIFRFAALRRRASALQLAISPSFG 139
+ V N ++ +AL +A P FG
Sbjct: 128 KKIQVSNNKVS-----GSIAIEEAALVVAKRPDFG 157
>At1g68690 protein kinase, putative
Length = 708
Score = 29.6 bits (65), Expect = 1.2
Identities = 19/52 (36%), Positives = 23/52 (43%), Gaps = 6/52 (11%)
Query: 46 PPPPRTLLLPFPLFQPRAPL----PPCLLHEAMKPPRNPSRRYLQSPISGEP 93
PPPP ++ P P P P+ PP + PP PS R QSP P
Sbjct: 123 PPPPASVPPPRP--SPSPPILVRSPPPSVRPIQSPPPPPSDRPTQSPPPPSP 172
Score = 27.7 bits (60), Expect = 4.6
Identities = 19/52 (36%), Positives = 21/52 (39%), Gaps = 5/52 (9%)
Query: 44 RKPPPPRTLLLPFPLFQPRAPLPPCLLHE--AMKPPRNPSRRYLQSPISGEP 93
+ PPPP + P P P PP E PP PS R QSP P
Sbjct: 153 QSPPPPPS---DRPTQSPPPPSPPSPPSERPTQSPPSPPSERPTQSPPPPSP 201
>At1g26150 Pto kinase interactor, putative
Length = 760
Score = 29.3 bits (64), Expect = 1.6
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 42 ATRKPPPPRTLLLPFPLFQPRAPLPPC-LLHEAMKPPRNPSRRYLQSP 88
A+ PPPPR LP P R PP H + PP +P RR P
Sbjct: 188 ASEIPPPPRH--LPSPPASERPSTPPSDSEHPSPPPPGHPKRREQPPP 233
Score = 26.9 bits (58), Expect = 7.8
Identities = 14/34 (41%), Positives = 16/34 (46%), Gaps = 4/34 (11%)
Query: 47 PPPRTLLLPFPLFQPRAPLPPCLLHEAMKPPRNP 80
PPP T+ P+ P P PP L PP NP
Sbjct: 85 PPPTTI----PVSPPPEPSPPPPLPTEAPPPANP 114
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.326 0.139 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,071,796
Number of Sequences: 26719
Number of extensions: 230244
Number of successful extensions: 1754
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1443
Number of HSP's gapped (non-prelim): 268
length of query: 210
length of database: 11,318,596
effective HSP length: 95
effective length of query: 115
effective length of database: 8,780,291
effective search space: 1009733465
effective search space used: 1009733465
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0021.5