BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0019b.9
(138 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g31500 unknown protein 30 0.31
At5g63340 unknown protein 30 0.40
At4g07640 putative athila transposon protein 28 1.2
At4g02960 putative polyprotein of LTR transposon 28 1.5
At5g65180 unknown protein 27 3.4
At4g20850 putative protein 27 3.4
At4g00650 Flowering Time gene FRIGIDA (FRI) 27 3.4
At4g35900 bZIP transcription factor AtbZIP14 27 4.4
At3g57950 putative protein 27 4.4
At3g10670 ABC transporter like ATPase 27 4.4
At5g07080 unknown protein 26 5.8
At3g31340 Athila ORF 1, putative 26 5.8
At1g25200 25 9.8
At1g25180 25 9.8
>At1g31500 unknown protein
Length = 335
Score = 30.4 bits (67), Expect = 0.31
Identities = 23/80 (28%), Positives = 36/80 (44%), Gaps = 2/80 (2%)
Query: 38 QEIHYAKAPQNRHTPYDLHIGEPQESNA-PEPTRNLKYKFLKSLCKPKPITVSSLTHGSS 96
+ I +AP + Y++ GEP+ +N P T L Y F+ KP+++ L S
Sbjct: 248 ETIEEEEAPVPLSSVYEVTRGEPKFTNCTPGFTNTLDYIFISPSDFIKPVSILQLPEPDS 307
Query: 97 PTPYSILRVFHNSSSPHLQL 116
P L H+ S HL +
Sbjct: 308 PDVVGFLPNHHHPSD-HLPI 326
>At5g63340 unknown protein
Length = 172
Score = 30.0 bits (66), Expect = 0.40
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 35 QIQQEIHYAKAPQNRHTPYDLHIGEPQESNAPE---PTRNLKYKFLKSLCKPKPITVSSL 91
+I QE Y P Y+LH+ +SN+P+ P R L K +++L KP +
Sbjct: 34 KISQECDYQINPMMNS--YELHV--KIKSNSPKKYLPQRQLAKKLIETLEKPSTESKKRS 89
Query: 92 THGSSPTPYSILRVFHNSSSPHL 114
SSP P + NSS P+L
Sbjct: 90 EEMSSPPPLIESKPL-NSSQPNL 111
>At4g07640 putative athila transposon protein
Length = 866
Score = 28.5 bits (62), Expect = 1.2
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 18/100 (18%)
Query: 14 SLETRQVPEGKLKTHTKPNKNQIQQEI----------HYAKAPQNRHTPYDLHIGEPQE- 62
+L TR+ P KT T+ +++Q +++ H Q+ P DL + +P +
Sbjct: 358 ALPTREEP----KTVTEDSEDQDGEDLSLEKDQADKPHEQPLDQSLEQPLDLSLEQPLDL 413
Query: 63 --SNAPEPTRNLKYKFLKSLCKPKPITVSSLTHGSSPTPY 100
N PT + S PKPITV + P PY
Sbjct: 414 PLDNVTRPTTRPIFP-AASATAPKPITVKNKEKVFVPPPY 452
>At4g02960 putative polyprotein of LTR transposon
Length = 1456
Score = 28.1 bits (61), Expect = 1.5
Identities = 32/124 (25%), Positives = 48/124 (37%), Gaps = 22/124 (17%)
Query: 13 SSLETRQVPEGKLKTHTKPNKNQIQQEIHYAKAPQNRHTPYDLHIGEPQESNAPEPTRNL 72
S L T QV L + + + + + PQ P+ + Q SN+ P N
Sbjct: 785 SPLCTTQVSSSNLPSSSISSPSSSEPTAPSHNGPQPTAQPH-----QTQNSNSNSPILN- 838
Query: 73 KYKFLKSLCKPKPITVS-SLTHGSSPTPYSILRVFHNSSSPHLQLAQRSIFIEDSPSPNS 131
P P + S + + +SP P S + SSPH+ SI +SPS +S
Sbjct: 839 ---------NPNPNSPSPNSPNQNSPLPQSPI------SSPHIPTPSTSISEPNSPSSSS 883
Query: 132 VKRP 135
P
Sbjct: 884 TSTP 887
>At5g65180 unknown protein
Length = 439
Score = 26.9 bits (58), Expect = 3.4
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 21 PEGKLKTHTKPNKNQIQQEIHYAKAPQNRHTPYDLHIGEPQES 63
P G L H N NQ A+ Q+ H P ++ G P S
Sbjct: 397 PPGTLPPHMMNNNNQPNAAQQQAQQGQSFHPPGMMYFGPPHHS 439
>At4g20850 putative protein
Length = 1396
Score = 26.9 bits (58), Expect = 3.4
Identities = 19/65 (29%), Positives = 30/65 (45%), Gaps = 9/65 (13%)
Query: 57 IGEPQESNAPEPTRNLKYKFLK--------SLCKPKPITVSSL-THGSSPTPYSILRVFH 107
I P + AP PT L+ + L S C + +S++ G +PYS+ R
Sbjct: 520 ISAPGGAVAPVPTWTLQRRMLMNGTSMASPSACGAIALLLSAMKAEGIPVSPYSVRRALE 579
Query: 108 NSSSP 112
N+S+P
Sbjct: 580 NTSTP 584
>At4g00650 Flowering Time gene FRIGIDA (FRI)
Length = 609
Score = 26.9 bits (58), Expect = 3.4
Identities = 17/51 (33%), Positives = 22/51 (42%), Gaps = 3/51 (5%)
Query: 85 PITVSSLTHGSSPTPYSILRVFHNSSSPHLQLAQRSIFIEDSPSPNSVKRP 135
P+ S HG PY I RV+ +S S L + + SP NS P
Sbjct: 561 PLQYSPPIHGQQQLPYGIQRVYRHSPSEERYLGLSN---QRSPRSNSSLDP 608
>At4g35900 bZIP transcription factor AtbZIP14
Length = 285
Score = 26.6 bits (57), Expect = 4.4
Identities = 20/69 (28%), Positives = 34/69 (48%), Gaps = 5/69 (7%)
Query: 48 NRHTPYDLHIGEPQ---ESNAPEPTRNLKYKFLKSLCKPKPITVSSLTHGSSPTPYS-IL 103
NRH+P+ H EP+ +++ + ++ FLK +P S T GS+P S +
Sbjct: 79 NRHSPHPQHNHEPRFRGQNHHNQNPNSIFQDFLKGSLNQEPAPTSQTT-GSAPNGDSTTV 137
Query: 104 RVFHNSSSP 112
V ++S P
Sbjct: 138 TVLYSSPFP 146
>At3g57950 putative protein
Length = 181
Score = 26.6 bits (57), Expect = 4.4
Identities = 15/49 (30%), Positives = 25/49 (50%), Gaps = 4/49 (8%)
Query: 74 YKFLKSLCKPKPITVSSLTHGSSPTPYSILRVFHNSSSPHLQLAQRSIF 122
Y+FL++L K K I + H S+ ++ +F +S + QR IF
Sbjct: 34 YRFLRALAKAKSIFLEISKHNSNNKKRKLMMLFPTKASKN----QRKIF 78
>At3g10670 ABC transporter like ATPase
Length = 338
Score = 26.6 bits (57), Expect = 4.4
Identities = 14/59 (23%), Positives = 32/59 (53%), Gaps = 1/59 (1%)
Query: 75 KFLKSLCKPKPITVSSLTHGSSPTPYSILRVFHNS-SSPHLQLAQRSIFIEDSPSPNSV 132
+F+ ++ P P+ + G+SP+ + + NS ++P L+ +RS+ + S ++V
Sbjct: 16 QFVPTVSSPPPLPTQRVRLGTSPSRVLLCNLRANSAAAPILRTTRRSVIVSASSVSSAV 74
>At5g07080 unknown protein
Length = 450
Score = 26.2 bits (56), Expect = 5.8
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 78 KSLCKPKPITVSS----LTHGSSPTPYSILRVFHNSSSPHLQLAQRSIFIEDSPSPN 130
+ + P P+ V + S TP L + + P+L+ ++I++ PSPN
Sbjct: 4 QGMSSPSPLVVKKSQVVIVKPSKATPDVSLSLSTLDNDPYLETLAKTIYVYAPPSPN 60
>At3g31340 Athila ORF 1, putative
Length = 781
Score = 26.2 bits (56), Expect = 5.8
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 10 KFTSSLETRQVPEGKLKTHTKPNKNQIQQEIHYAKAPQNRHT----PYDLHIGEPQESNA 65
K S V L +H K +NQ+ Q + + P H+ P ++ + + E+NA
Sbjct: 384 KVDSMYNDLNVKFATLSSHVKTLENQVSQVVSASMRPAGAHSGKEEPREIDVAKQVETNA 443
>At1g25200
Length = 248
Score = 25.4 bits (54), Expect = 9.8
Identities = 18/60 (30%), Positives = 22/60 (36%)
Query: 73 KYKFLKSLCKPKPITVSSLTHGSSPTPYSILRVFHNSSSPHLQLAQRSIFIEDSPSPNSV 132
KY +S+ S SP Y R NSSS H A R + P+ SV
Sbjct: 50 KYPASRSVSSSSSAHPSQAARQLSPPKYPASRSVSNSSSAHPSQAARQLTRPKYPASRSV 109
>At1g25180
Length = 258
Score = 25.4 bits (54), Expect = 9.8
Identities = 18/60 (30%), Positives = 22/60 (36%)
Query: 73 KYKFLKSLCKPKPITVSSLTHGSSPTPYSILRVFHNSSSPHLQLAQRSIFIEDSPSPNSV 132
KY +S+ S SP Y R NSSS H A R + P+ SV
Sbjct: 50 KYPASRSVSSSSSAHPSQAARQLSPPKYPASRSVSNSSSAHPSQAARQLTRPKYPASRSV 109
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.311 0.128 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,519,121
Number of Sequences: 26719
Number of extensions: 158724
Number of successful extensions: 324
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 318
Number of HSP's gapped (non-prelim): 16
length of query: 138
length of database: 11,318,596
effective HSP length: 89
effective length of query: 49
effective length of database: 8,940,605
effective search space: 438089645
effective search space used: 438089645
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0019b.9