BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0017.17
(167 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g07580 unknown protein 41 3e-04
At1g06670 DEIH-box RNA/DNA helicase 32 0.12
At2g34350 nodulin-like protein 31 0.36
At1g05350 unknown protein 29 1.0
At3g24860 unknown protein 29 1.3
At5g52430 putative protein 28 1.8
At5g33420 replication protein A1-like 28 2.3
At5g08470 putative protein 28 2.3
At4g00440 unknown protein 28 3.0
At5g41790 myosin heavy chain-like protein 27 3.9
At5g12040 unknown protein 27 3.9
At4g16790 glycoprotein homolog 27 3.9
At3g22520 unknown protein 27 3.9
At2g18080 unknown protein 27 5.1
At2g13910 unknown protein 27 5.1
At1g10170 hypothetical protein 27 5.1
At5g27650 putative protein 27 6.7
At3g12140 unknown protein 27 6.7
At1g25550 unknown protein 27 6.7
At4g07810 putative polyprotein 26 8.7
>At3g07580 unknown protein
Length = 116
Score = 41.2 bits (95), Expect = 3e-04
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 98 WTAAIQSYNN-SKDSPEKPVMYSGGTSVWTHFRLPHQIMSPAASAPPSVSQLDFLGELNR 156
W A + Y++ + D +P+MY GG SVW +LPHQI++ A P S D++ E+ R
Sbjct: 51 WAAEMHQYDDPTVDLSVRPIMYYGG-SVWG--KLPHQILAAANKTLPPPSPTDYMTEVRR 107
>At1g06670 DEIH-box RNA/DNA helicase
Length = 1576
Score = 32.3 bits (72), Expect = 0.12
Identities = 21/78 (26%), Positives = 41/78 (51%), Gaps = 8/78 (10%)
Query: 4 NLHPAPPSESVKRYAPPNQRNRSTNRRKSSDRLD-------RTNSIGNDLEKNQFASSRN 56
+L+ AP ++ P +R+RS +RKS + LD + + + N+ E+ + S+ N
Sbjct: 1336 DLNIAPGEDASAAKQPEKKRSRS-KKRKSGNNLDLGKMEKSKPSDLANENEQTEPKSANN 1394
Query: 57 VQVQDRIDAVSSNLVNEN 74
+ + + + S+L NEN
Sbjct: 1395 LDLGNMKENTPSDLANEN 1412
>At2g34350 nodulin-like protein
Length = 2301
Score = 30.8 bits (68), Expect = 0.36
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 1 MLENLHPAPPSESVKRYAPPNQRNRSTNRRKSSDRLDRTNSIGNDLEKNQFASSRNVQV 59
+LE L +E+VK P TN RK +R ++ + G+D+ K+Q + + +V
Sbjct: 2003 LLEMLIKKCGTEAVKSVMPEEHMKLLTNIRKIKERKEKKYAAGSDISKSQHSKDTSSKV 2061
>At1g05350 unknown protein
Length = 445
Score = 29.3 bits (64), Expect = 1.0
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 40 NSIGNDLEKNQFASSRNVQVQDRIDAVSSNLVNENPYSRFVAL 82
N + + +E S N + ++ +SS +V+ NPYSR +AL
Sbjct: 26 NKLRSHVENLATLSKCNPHRRSKVKELSSEVVDSNPYSRLMAL 68
>At3g24860 unknown protein
Length = 310
Score = 28.9 bits (63), Expect = 1.3
Identities = 15/56 (26%), Positives = 26/56 (45%)
Query: 2 LENLHPAPPSESVKRYAPPNQRNRSTNRRKSSDRLDRTNSIGNDLEKNQFASSRNV 57
L++ +PAP S PPN NR + + + D N + E + + SR++
Sbjct: 147 LDSSNPAPISARPLTRLPPNSNNRYVDDEEEDEEEDNNNYEEEEEEDERQSKSRSI 202
>At5g52430 putative protein
Length = 438
Score = 28.5 bits (62), Expect = 1.8
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 24 NRSTNRRKSSDRLDRTNSIGNDLEKN-QFASSRNVQVQDRIDAVSSNLVNENPYSRF 79
NRS +R ++DR++ S D+ +N + S Q RI +SS+ + + +F
Sbjct: 355 NRSHDRMNNNDRIETEESSSTDIRRNIEKRSGDRENEQHRIQKLSSSSIGSSKEFKF 411
>At5g33420 replication protein A1-like
Length = 370
Score = 28.1 bits (61), Expect = 2.3
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 43 GNDLEKNQFASSRNV---QVQDRIDAVSSNLVNE 73
GNDL +NQ +SS+ ++D ID S N+V +
Sbjct: 332 GNDLHENQSSSSKKFCIPSIRDDIDKESGNIVED 365
>At5g08470 putative protein
Length = 1125
Score = 28.1 bits (61), Expect = 2.3
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 19/96 (19%)
Query: 54 SRNVQVQDRIDAVSSNLVNENPYSRFVALDGCSCSAASQLLNDRWTAAIQSYNNSKDSPE 113
SR + + D ID L+ E G S + LL+D AA+ Y N +D PE
Sbjct: 1025 SRKLLMADDIDLEPIALMTE----------GFSGADLQALLSDAQLAAVHEYLNREDKPE 1074
Query: 114 KPVMYSGGTSVWTHFRLPHQIMSPAASAPPSVSQLD 149
+G T + T + S A+ PSVS+ +
Sbjct: 1075 -----TGTTPIIT----DPLLKSIASKTKPSVSETE 1101
>At4g00440 unknown protein
Length = 831
Score = 27.7 bits (60), Expect = 3.0
Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 21 NQRNRSTNRRKSSDRLDRTNSIGND---LEKNQFASSRNVQVQDRIDAVSSNL 70
NQR ++ R+KS D N + ++ +++ S+R+V + + I+ S +
Sbjct: 123 NQRRKNKTRKKSCDNFSHMNLVDSEEPLVQRRNRRSARSVDIDNMIEEFYSEI 175
>At5g41790 myosin heavy chain-like protein
Length = 1305
Score = 27.3 bits (59), Expect = 3.9
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 2 LENLHPAPPSESVKRYAPPNQRNRSTNRRKSSDRLDRTNSIGNDLEKNQFASSRNVQVQD 61
L ++H ES R + + S+ +R S D T + + E+N+ SS+N+++ D
Sbjct: 317 LRDIHETHQRESSTRVSELEAQLESSEQRIS----DLTVDLKDAEEENKAISSKNLEIMD 372
Query: 62 RIDAVSSNL 70
+++ + +
Sbjct: 373 KLEQAQNTI 381
>At5g12040 unknown protein
Length = 369
Score = 27.3 bits (59), Expect = 3.9
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 67 SSNLVNENPYSRFVALDGCSCSAASQLLNDRWTAAIQSYNNSKDSPEKPVMYSGGTSVWT 126
S NL+N NP SRF++L S L +I S+ S + S +S+ +
Sbjct: 13 SKNLLNPNPLSRFISL-------KSNFLPKLSPRSITSHTLKLPSSSTSALRSISSSMAS 65
Query: 127 HFRLPHQIMSPAA---SAPP 143
F P Q P+A APP
Sbjct: 66 SFN-PEQARVPSALPLPAPP 84
>At4g16790 glycoprotein homolog
Length = 473
Score = 27.3 bits (59), Expect = 3.9
Identities = 14/36 (38%), Positives = 21/36 (57%), Gaps = 1/36 (2%)
Query: 7 PAPPSESVKRY-APPNQRNRSTNRRKSSDRLDRTNS 41
P PP V+ Y +PP + S RRKSS++ + N+
Sbjct: 332 PPPPPPPVEYYKSPPTKFRLSNERRKSSEQKMKRNA 367
>At3g22520 unknown protein
Length = 600
Score = 27.3 bits (59), Expect = 3.9
Identities = 17/67 (25%), Positives = 25/67 (36%)
Query: 7 PAPPSESVKRYAPPNQRNRSTNRRKSSDRLDRTNSIGNDLEKNQFASSRNVQVQDRIDAV 66
P P + P + S+N++K T + K S R +Q R AV
Sbjct: 244 PTPQTYEPVEAKPKSTPRGSSNKKKKGATTPATGPQSSTKPKPSRQSGRRTSIQQRGGAV 303
Query: 67 SSNLVNE 73
N +NE
Sbjct: 304 DLNFLNE 310
>At2g18080 unknown protein
Length = 365
Score = 26.9 bits (58), Expect = 5.1
Identities = 15/71 (21%), Positives = 27/71 (37%), Gaps = 2/71 (2%)
Query: 73 ENPYSRFVALDGCSCSAASQLLNDRWTAAIQSYNNSKDSPEK--PVMYSGGTSVWTHFRL 130
+ P + +G A+ +N+ + + D+P + YSG S W +
Sbjct: 8 DGPMFMIICGEGPCSGIANDYINESLNKKLNISSGGSDNPWFFFGISYSGALSAWFRLKF 67
Query: 131 PHQIMSPAASA 141
PH AS+
Sbjct: 68 PHLTCGSLASS 78
>At2g13910 unknown protein
Length = 608
Score = 26.9 bits (58), Expect = 5.1
Identities = 15/43 (34%), Positives = 24/43 (54%)
Query: 2 LENLHPAPPSESVKRYAPPNQRNRSTNRRKSSDRLDRTNSIGN 44
LE HP+ PS S++ Y+PP+ R + +K D L+ + N
Sbjct: 114 LEFKHPSYPSLSLQLYSPPSDRVFCSCCQKRIDGLNYYSPTNN 156
>At1g10170 hypothetical protein
Length = 1188
Score = 26.9 bits (58), Expect = 5.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 4 NLHPAPPSESVKRYAPPNQRNRSTN 28
N+ P PP++ + AP NQ RS N
Sbjct: 82 NIGPPPPNQHRRYNAPDNQHQRSDN 106
>At5g27650 putative protein
Length = 1063
Score = 26.6 bits (57), Expect = 6.7
Identities = 16/52 (30%), Positives = 23/52 (43%)
Query: 2 LENLHPAPPSESVKRYAPPNQRNRSTNRRKSSDRLDRTNSIGNDLEKNQFAS 53
+EN PS+ VK +++ +R SSDR D S + NQ S
Sbjct: 681 VENARDTKPSKPVKTVKRTEDPSKAGKKRLSSDRQDEIPSAKKLKKTNQLKS 732
>At3g12140 unknown protein
Length = 327
Score = 26.6 bits (57), Expect = 6.7
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 19 PPNQRNRSTNRRKSSDRLD--RTNSIGNDLEK 48
PP Q+N S RR SSD ++ T+S+ ++E+
Sbjct: 240 PPTQQNGSGGRRTSSDDIELFNTDSLVKEVER 271
>At1g25550 unknown protein
Length = 344
Score = 26.6 bits (57), Expect = 6.7
Identities = 17/67 (25%), Positives = 29/67 (42%), Gaps = 13/67 (19%)
Query: 93 LLNDRWTAAIQSYNNSKDSPEKPVMYSGGTS-----------VW--THFRLPHQIMSPAA 139
L ND + +Q Y P PV+ +GG + +W +H +++ +P A
Sbjct: 249 LTNDEVKSHLQKYRLHTRRPATPVVRTGGENPQQRQFMVMEGIWVPSHDTTNNRVYAPVA 308
Query: 140 SAPPSVS 146
+ PP S
Sbjct: 309 TQPPQSS 315
>At4g07810 putative polyprotein
Length = 1366
Score = 26.2 bits (56), Expect = 8.7
Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Query: 30 RKSSDRLDRTNSIGNDLEKNQFASSRNVQVQDRIDA--VSSNLVNENPYSRFVALDGCSC 87
R L + S+ N L++ S R+ + S ++ F L C+C
Sbjct: 87 RSRQSNLSKIYSVQNQLDRLHQGSLDLSAYYTRLTVTFIRSQCLSWEELKNFEELPSCTC 146
Query: 88 SAASQLLNDRWTAAIQSYN 106
+ NDRW + +N
Sbjct: 147 GKCTCGSNDRWIQLYEKHN 165
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.311 0.125 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,755,666
Number of Sequences: 26719
Number of extensions: 141871
Number of successful extensions: 414
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 403
Number of HSP's gapped (non-prelim): 22
length of query: 167
length of database: 11,318,596
effective HSP length: 92
effective length of query: 75
effective length of database: 8,860,448
effective search space: 664533600
effective search space used: 664533600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0017.17