BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0016.5
(733 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g16000 putative retroelement pol polyprotein 204 2e-52
At2g20460 putative retroelement pol polyprotein 197 1e-50
At2g07420 putative retroelement pol polyprotein 197 2e-50
At1g70010 hypothetical protein 195 9e-50
At1g31210 putative reverse transcriptase 195 9e-50
At1g53810 187 2e-47
At2g07010 putative retroelement pol polyprotein 182 4e-46
At4g10690 retrotransposon like protein 181 1e-45
At1g26990 polyprotein, putative 171 1e-42
At4g28900 putative protein 170 2e-42
At2g14930 pseudogene 169 4e-42
At4g16870 retrotransposon like protein 164 2e-40
At3g60170 putative protein 164 2e-40
At4g02960 putative polyprotein of LTR transposon 156 3e-38
At1g44510 polyprotein, putative 154 1e-37
At1g59265 polyprotein, putative 143 3e-34
At1g58889 polyprotein, putative 143 3e-34
At1g47650 hypothetical protein 137 2e-32
At3g61330 copia-type polyprotein 135 8e-32
At4g19790 putative LTR retrotransposon (fragment) 134 2e-31
>At2g16000 putative retroelement pol polyprotein
Length = 1454
Score = 204 bits (518), Expect = 2e-52
Identities = 166/665 (24%), Positives = 289/665 (42%), Gaps = 87/665 (13%)
Query: 12 RLNGKNYSAWAFEFQIFVKGKSLWGHVDGSTSALDKEKQETEYADWEVKDNQVLAWIIRF 71
RL+ NY W+ I + K+ G +DG+ S + + + W ++ V +W++
Sbjct: 78 RLDETNYGDWSVAMLISLDAKNKTGFIDGTLSR--PLESDLNFRLWSRCNSMVKSWLLNS 135
Query: 72 VDPNIVLNLRPFSTAAKMWAYLKKIYNQNNTARRFQLEHDIAIFQQEILSISEFYSQFMN 131
V P I ++ + A+ +W L +N N R + L +I F+Q LS+SE+Y++
Sbjct: 136 VSPQIYRSILRMNDASDIWRDLNSRFNVTNLPRTYNLTQEIQDFRQGTLSLSEYYTRLKT 195
Query: 132 LW--ADYTDIVYGSVSTEGLTSVQTVHETTK*DQFLMKLRSDFEGIRTNLMNRATVPS*D 189
LW D T+ + + +Q E K +FL L + +R ++ + +PS
Sbjct: 196 LWDQLDSTEALDEPCTCGKAMRLQQKAEQAKIVKFLAGLNESYAIVRRQIIAKKALPS-- 253
Query: 190 ACLNELLREERRLLTLATMEQHKS--ASLPVAYVVQEKPRGRDLSAVQCFCCKGFGHYAS 247
L E +L +Q S + P A+ V E + + C+ G
Sbjct: 254 ------LGEVYHILDQDNSQQSFSNVVAPPAAFQVSEITQSPSMDPTVCYVQNG-----P 302
Query: 248 NCPRKSCNYCKKDGHVIKECPIR---PP---KKNATTFTTSVHSPIAPSFVDIANVQHNA 301
N R C++ + GH+ + C + PP K P+A + + + V +
Sbjct: 303 NKGRPICSFYNRVGHIAERCYKKHGFPPGFTPKGKAGEKLQKPKPLAANVAESSEVNTSL 362
Query: 302 PTPVQALTPEIVEHMIIL-------------------------------AFSALGIS--G 328
+ V L+ E ++ I + +S +GI
Sbjct: 363 ESMVGNLSKEQLQQFIAMFSSQLQNTPPSTYATASTSQSDNLGICFSPSTYSFIGILTVA 422
Query: 329 KHSPNSSPWYFDYGASNHMANNAEALTNITQNFGNLKIQVANGNHLPITAIGDISTS--- 385
+H+ +S+ W D GA++H++++ +++ + + + + G + I+ +G + +
Sbjct: 423 RHTLSSATWVIDSGATHHVSHDRSLFSSLDTSVLSA-VNLPTGPTVKISGVGTLKLNDDI 481
Query: 386 -LNDVYVSPGLTSNLIFVGQLVDN-DCRVAFSKSGCLVQDQHSGKLIARGPKVGRLFPLC 443
L +V P NLI + L D+ RV F K+ C +QD G+++ +G +V L+ L
Sbjct: 482 LLKNVLFIPEFRLNLISISSLTDDIGSRVIFDKNSCEIQDLIKGRMLGQGRRVANLYLL- 540
Query: 444 FSMSPCSSLPFVSCHSATVVNFELWHKRLGHPNSNVLYELLQS-GVLGNKETPSLSTIKF 502
+ S VV+ +WH+RLGH + L + S G +K S
Sbjct: 541 -------DVGDQSISVNAVVDISMWHRRLGHASLQRLDAISDSLGTTRHKNKGSDF---- 589
Query: 503 DCTYCKLGKSKILPFPNHQSNISQTFDMIHSDLWGITPVISHANYKYFVTFIDDFSRFTW 562
C C L K + L FP + FD++H D+WG V + YKYF+T +DD SR TW
Sbjct: 590 -CHVCHLAKQRKLSFPTSNKVCKEIFDLLHIDVWGPFSVETVEGYKYFLTIVDDHSRATW 648
Query: 563 VYFLRSKDEVFSAFKFFHAYVETQFSSKIKILRSDNGGGKVHI*FDSRFFENKWYFISKV 622
+Y L++K EV + F F VE Q+ K+K +RSDN + +F +Y +
Sbjct: 649 MYLLKTKSEVLTVFPAFIQQVENQYKVKVKAVRSDNAP-------ELKF--TSFYAEKGI 699
Query: 623 MSFHS 627
+SFHS
Sbjct: 700 VSFHS 704
>At2g20460 putative retroelement pol polyprotein
Length = 1461
Score = 197 bits (502), Expect = 1e-50
Identities = 166/671 (24%), Positives = 280/671 (40%), Gaps = 92/671 (13%)
Query: 12 RLNGKNYSAWAFEFQIFVKGKSLWGHVDGSTSALDKEKQETEYADWEVKDNQVLAWIIRF 71
RL+ Y W+ +I + K+ G VDGS + + + W ++ V +W++
Sbjct: 82 RLDETTYGDWSVAMRISLDAKNKLGFVDGSLPR--PLESDPNFRLWSRCNSMVKSWLLNS 139
Query: 72 VDPNIVLNLRPFSTAAKMWAYLKKIYNQNNTARRFQLEHDIAIFQQEILSISEFYSQFMN 131
V P I ++ + A +W L +N N R + L +I +Q +S+SE+Y+
Sbjct: 140 VSPQIYRSILRLNDATDIWRDLFDRFNLTNLPRTYNLTQEIQDLRQGTMSLSEYYTLLKT 199
Query: 132 LW--ADYTDIVYGSVSTEGLTSVQTVHETTK*DQFLMKLRSDFEGIRTNLMNRATVPS*D 189
LW D T+ + + + E K +FL L + +R ++ + +PS
Sbjct: 200 LWDQLDSTEALDDPCTCGKAVRLYQKAEKAKIMKFLAGLNESYAIVRRQIIAKKALPS-- 257
Query: 190 ACLNELLREERRLLTLATMEQ--HKSASLPVAYVVQEKPRGRDLSAVQCFCCKGFGHYAS 247
L E +L ++ + P A+ V E S + G
Sbjct: 258 ------LAEVYHILDQDNSQKGFFNVVAPPAAFQVSEVSHSPITSPEIMYVQSG-----P 306
Query: 248 NCPRKSCNYCKKDGHVIKEC----------------PIRPPKKNATTFTTSVH------- 284
N R +C++C + GH+ + C +PPK A ++
Sbjct: 307 NKGRPTCSFCNRVGHIAERCYKKHGFPPGFTPKGKSSDKPPKPQAVAAQVTLSPDKMTGQ 366
Query: 285 ---------------------SPIAPSFVD--IANVQHNAPTPVQALTPEIVEHMIILAF 321
S + P V A+ QH A + I+ F
Sbjct: 367 LETLAGNFSPDQIQNLIALFSSQLQPQIVSPQTASSQHEASSSQSVAPSGILFSPSTYCF 426
Query: 322 SALGISGKHSPNSSPWYFDYGASNHMANNAEALTNITQNFGNLKIQVANGNHLPITAIGD 381
+ +S +S W D GA++H++++ + + + + + + G ++ I+ +G
Sbjct: 427 IGILAVSHNSLSSDTWVIDSGATHHVSHDRKLFQTLDTSIVSF-VNLPTGPNVRISGVGT 485
Query: 382 ISTS----LNDVYVSPGLTSNLIFVGQLV-DNDCRVAFSKSGCLVQDQHSGKLIARGPKV 436
+ + L +V P NLI + L D RV F S C +QD G + G ++
Sbjct: 486 VLINKDIILQNVLFIPEFRLNLISISSLTTDLGTRVIFDPSCCQIQDLTKGLTLGEGKRI 545
Query: 437 GRLFPLCFSMSPCSSLPFVSCHSATVVNFELWHKRLGHPNSNVLYELLQSGVLGNKETPS 496
G L+ L + SP S+ VV+ +WHKRLGHP+ + L L S VLG +
Sbjct: 546 GNLYVLD-TQSPAISVN-------AVVDVSVWHKRLGHPSFSRLDSL--SEVLGTTRHKN 595
Query: 497 LSTIKFDCTYCKLGKSKILPFPNHQSNISQTFDMIHSDLWGITPVISHANYKYFVTFIDD 556
+ C C L K K L FP+ + + TF+++H D+WG V + YKYF+T +DD
Sbjct: 596 KKSAY--CHVCHLAKQKKLSFPSANNICNSTFELLHIDVWGPFSVETVEGYKYFLTIVDD 653
Query: 557 FSRFTWVYFLRSKDEVFSAFKFFHAYVETQFSSKIKILRSDNGGGKVHI*FDSRFFENKW 616
SR TW+Y L+SK +V + F F VE Q+ +++K +RSDN ++
Sbjct: 654 HSRATWIYLLKSKSDVLTVFPAFIDLVENQYDTRVKSVRSDNA---------KELAFTEF 704
Query: 617 YFISKVMSFHS 627
Y ++SFHS
Sbjct: 705 YKAKGIVSFHS 715
>At2g07420 putative retroelement pol polyprotein
Length = 1664
Score = 197 bits (501), Expect = 2e-50
Identities = 170/629 (27%), Positives = 278/629 (44%), Gaps = 93/629 (14%)
Query: 1 MSTEKYEVLLVRLNGKNYSAWAFEFQIFVKGKSLWGHV---DGSTSALDKEKQETEYAD- 56
M K + V L G NY WA + + + LW H+ + + A +E E +
Sbjct: 1 MENTKALFVPVTLKGVNYLLWARTTKTTLCSRGLWAHILTSEAPSEATIREGMEIVHVGE 60
Query: 57 --WEVKDNQVLAWIIRFVDPNIVLNLRPFSTAAKMWAYLKKIY-NQNNTARRFQLEHDIA 113
W +D VLA + ++ +++ TA ++W L ++ NQ+N +R F+++ I
Sbjct: 61 EKWFQEDQSVLALLQNSLEASLLEAYSYCETAKELWETLFNVFGNQSNLSRVFEVKKAIN 120
Query: 114 IFQQEILSISEFYSQFMNLWADYTDIVYGSVSTEGLTSVQTVHETTK*DQFLMKLRSDFE 173
Q + ++ + +F +LWA+ + ++ + L + E K L+ L S +
Sbjct: 121 DLSQGDMEFTQHFGKFRSLWAELEMLRPNTLDPKVLIERR---EQDKVFGLLLTLSSTYN 177
Query: 174 GIRTNLMNRATVPS*DACLNELLREERRLLTLATMEQHKSASLPVAYVVQEKPRGRDLSA 233
+ +L+ +P+ + +++ +E+
Sbjct: 178 DLIKHLLRADKLPNLEEVCSQIQKEQAN-------------------------------- 205
Query: 234 VQCFCCKGFGHYASNCPRKSCNYCKKDGHVIKEC-----PIRP----PKKNATT---FTT 281
+G Y +N C +CK+ GH ++C +RP P+ N T F T
Sbjct: 206 ------RGNYKYDNNKKALWCEHCKRSGHTKEKCWTLHPHLRPGRREPRANQVTGENFGT 259
Query: 282 SVHSPIAPSFVDIANVQHNAPTPVQALTPEIVEHMIILAF--SALGISGK--HSPNS-SP 336
S +N A + ++V + A + SGK H+ +S P
Sbjct: 260 QEQS-------GTSNQHLGGNGAAMAASSDLVRRSDLKALIKALKESSGKSYHALSSLKP 312
Query: 337 WYFDYGASNHMANNAEALTNITQNFGNLKIQVANGNHLPITAIGDIST--SLNDVYVSPG 394
D GAS+HM ++++ ++NI GN + +ANG+ +P+ +GD+ + + P
Sbjct: 313 LIIDSGASHHMISDSKLISNIEPALGN--VVIANGDRIPVKGVGDLDLFDKSSKAFYMPT 370
Query: 395 LTSNLIFVGQLV-DNDCRVAFSKSGCLVQDQHSGKLIARGPKVGRLFPLCFSMSPCSSLP 453
TSNL+ V + D +C F + QD + +++ +G L+ L S+P
Sbjct: 371 FTSNLLSVKKATTDLNCYAIFGPNEVHFQDIETSRVLGQGVTKDGLYVL---EDTKPSVP 427
Query: 454 FVSCHSATV--VNFELWHKRLGHPNSNVLYELLQSGVLGNKETPSLSTIKFDCTYCKLGK 511
S S+ + N E WH RLGHP+S L LL PS S +C C LGK
Sbjct: 428 LSSHFSSILGNANSESWHARLGHPHSRALKLLL----------PSTSFKNDECEACILGK 477
Query: 512 SKILPFPNHQSNISQTFDMIHSDLWGITPVISHANYKYFVTFIDDFSRFTWVYFLRSKDE 571
FP + + FD+IHSD+W +P +S N+KYFVTFID+ S+FTW L SKD
Sbjct: 478 HCKSVFPKSSTIYEKCFDLIHSDVW-TSPCLSRENHKYFVTFIDEKSKFTWFTLLPSKDR 536
Query: 572 VFSAFKFFHAYVETQFSSKIKILRSDNGG 600
V AF F YV + +KIKILRSDN G
Sbjct: 537 VLEAFTNFQTYVTNHYDAKIKILRSDNRG 565
>At1g70010 hypothetical protein
Length = 1315
Score = 195 bits (495), Expect = 9e-50
Identities = 154/579 (26%), Positives = 266/579 (45%), Gaps = 59/579 (10%)
Query: 29 VKGKSLWGHVDGSTSALDKEKQETEYAD-WEVKDNQVLAWIIRFVDPNIVLNLRPFSTAA 87
++ K+ G VDGS + K + Y W ++ V +W++ V I ++ F TAA
Sbjct: 5 IEAKNKLGFVDGS---IPKPDDDDPYCKIWRRCNSMVKSWLLNSVSKEIYTSILYFPTAA 61
Query: 88 KMWAYLKKIYNQNNTARRFQLEHDIAIFQQEILSISEFYSQFMNLWADYTDIVYGSVSTE 147
+W L +++++ R ++L I +Q L +S ++++ LW + T + + E
Sbjct: 62 AIWKDLYTRFHKSSLPRLYKLRQQIHSLRQGNLDLSSYHTRTQTLWEELTSLQAVPRTVE 121
Query: 148 GLTSVQTVHETTK*DQFLMKLRSDFEGIRTNLMNRATVPS*DACLNELLREE-RRLLTLA 206
L + ET + FLM L ++ +R+ ++ + T+PS N + ++E +R ++
Sbjct: 122 DLLIER---ETNRVIDFLMGLNDCYDTVRSQILMKKTLPSLSEVFNMIDQDETQRSARIS 178
Query: 207 TMEQHKSASLPVAYVVQEKPRGRDLSAVQCFCCKGFGHYASNCPRKSCNYCKKDGHVIKE 266
T S+ PV+ + D + R C+YC + GHV
Sbjct: 179 TTPGMTSSVFPVSNQSSQSALNGDTYQKK--------------ERPVCSYCSRPGHVEDT 224
Query: 267 CPIRPPKKNATTFTTSVHSPIAPSF-----VDIANVQHNAPTPVQALTPEIVEHMIILAF 321
C K T S + PS + V +N LT ++ ++
Sbjct: 225 CY---KKHGYPTSFKSKQKFVKPSISANAAIGSEEVVNNTSVSTGDLTTSQIQQLVSF-- 279
Query: 322 SALGISGKHSPNSSPWYFDYGASNHMANNAEALTNITQNFGNLKIQVANGNHLPITAIGD 381
+S K P S+P + + + ++++ + + + G++ + G HL
Sbjct: 280 ----LSSKLQPPSTPVQPEVHSIS-VSSDPSSSSTVCPISGSVHL----GRHL------- 323
Query: 382 ISTSLNDVYVSPGLTSNLIFVGQLVDN-DCRVAFSKSGCLVQDQHSGKLIARGPKVGRLF 440
LNDV P NL+ V L + CR+ F ++ C++QD ++ G +V L+
Sbjct: 324 ---ILNDVLFIPQFKFNLLSVSSLTKSMGCRIWFDETSCVLQDATRELMVGMGKQVANLY 380
Query: 441 PLCF-SMSPCSSLPFVSCHSATVVNFELWHKRLGHPNSNVLYELLQSGVLGNKETPSLST 499
+ S+S + ++ A+V + +LWHKRLGHP+ L + S +L + +
Sbjct: 381 IVDLDSLSHPGTDSSITV--ASVTSHDLWHKRLGHPSVQKLQPM--SSLLSFPKQKN--N 434
Query: 500 IKFDCTYCKLGKSKILPFPNHQSNISQTFDMIHSDLWGITPVISHANYKYFVTFIDDFSR 559
F C C + K K LPF +H + S+ FD+IH D WG V +H Y+YF+T +DD+SR
Sbjct: 435 TDFHCRVCHISKQKHLPFVSHNNKSSRPFDLIHIDTWGPFSVQTHDGYRYFLTIVDDYSR 494
Query: 560 FTWVYFLRSKDEVFSAFKFFHAYVETQFSSKIKILRSDN 598
TWVY LR+K +V + F VE QF + IK +RSDN
Sbjct: 495 ATWVYLLRNKSDVLTVIPTFVTMVENQFETTIKGVRSDN 533
>At1g31210 putative reverse transcriptase
Length = 1415
Score = 195 bits (495), Expect = 9e-50
Identities = 160/638 (25%), Positives = 274/638 (42%), Gaps = 120/638 (18%)
Query: 11 VRLNGKNYSAWAFEFQIFVKGKSLWGHVDGSTSA-----------LDKEKQETEYADWEV 59
++L NY W +F+ + + L G V+G+ +A + E+ Y W
Sbjct: 19 LKLTDSNYLLWKTQFESLLSSQKLIGFVNGAVNAPSQSRLVVNGEVTSEEPNPLYESWFC 78
Query: 60 KDNQVLAWIIRFVDPNIVLNLRPFSTAAKMWAYLKKIYNQNNTARRFQLEHDIAIFQQEI 119
D V +W+ + ++ ++ ST+ ++W L + +N+++ AR F L ++ + ++
Sbjct: 79 TDQLVRSWLFGTLSEEVLGHVHNLSTSRQIWVSLAENFNKSSVAREFSLRQNLQLLSKKE 138
Query: 120 LSISEFYSQFMNLWADYTDIVYGSVSTEGLTSV-QTVHETTK*DQFLMKLRSDFEGIRTN 178
S + +F + + L+S+ + V E+ K FL L D++ I T
Sbjct: 139 KPFSVYCREFKTI-------------CDALSSIGKPVDESMKIFGFLNGLGRDYDPITTV 185
Query: 179 L---MNRATVPS*DACLNELLREERRLLTL---ATMEQH------KSASLPVAYVVQEKP 226
+ +++ P+ + ++E+ + +L + A++ H +S S Y +K
Sbjct: 186 IQSSLSKLPTPTFNDVVSEVQGFDSKLQSYEEAASVTPHLAFNIERSESGSPQYNPNQKG 245
Query: 227 RGRDLSAVQCFCCKGFGHYAS--------------NCPRKSCNYCKKDGHVIKECPIRPP 272
RGR KG G Y++ + PR C C + GH +C R
Sbjct: 246 RGRSGQN------KGRGGYSTRGRGFSQHQSSPQVSGPRPVCQICGRTGHTALKCYNR-- 297
Query: 273 KKNATTFTTSVHSPIAPSFVDIANVQHNAPTPVQALTPEIVEHMIILAFSALGISGKHSP 332
+N +QA FS L +S
Sbjct: 298 ------------------------FDNNYQAEIQA-------------FSTLRVS---DD 317
Query: 333 NSSPWYFDYGASNHMANNAEALTNITQNFGNLKIQVANGNHLPITAIGDISTS------- 385
W+ D A+ H+ ++ L + T+ G+ + V +G +LPIT G +
Sbjct: 318 TGKEWHPDSAATAHVTSSTNGLQSATEYEGDDAVLVGDGTYLPITHTGSTTIKSSNGKIP 377
Query: 386 LNDVYVSPGLTSNLIFVGQLVDN-DCRVAFSKSGCLVQDQHSGKLIARGPKVGRLFPLCF 444
LN+V V P + +L+ V +L D+ C V F + + D + K++ GP+ L+ L
Sbjct: 378 LNEVLVVPNIQKSLLSVSKLCDDYPCGVYFDANKVCIIDLQTQKVVTTGPRRNGLYVL-- 435
Query: 445 SMSPCSSLPFVSCHS--ATVVNFELWHKRLGHPNSNVLYELLQSGVLGNKETPSLSTIKF 502
+ FV+ +S E+WH RLGH NS L L S + ++ +
Sbjct: 436 -----ENQEFVALYSNRQCAATEEVWHHRLGHANSKALQHLQNSKAIQINKSRTSPV--- 487
Query: 503 DCTYCKLGKSKILPFPNHQSNISQTFDMIHSDLWGITPVISHANYKYFVTFIDDFSRFTW 562
C C++GKS LPF S + D IH DLWG +PV+S+ KY+ F+DD+SR++W
Sbjct: 488 -CEPCQMGKSSRLPFLISDSRVLHPLDRIHCDLWGPSPVVSNQGLKYYAIFVDDYSRYSW 546
Query: 563 VYFLRSKDEVFSAFKFFHAYVETQFSSKIKILRSDNGG 600
Y L +K E S F F VE Q ++KIK+ +SD GG
Sbjct: 547 FYPLHNKSEFLSVFISFQKLVENQLNTKIKVFQSDGGG 584
>At1g53810
Length = 1522
Score = 187 bits (475), Expect = 2e-47
Identities = 170/633 (26%), Positives = 261/633 (40%), Gaps = 104/633 (16%)
Query: 11 VRLNGKNYSAWAFEFQIFVKGKSLWGHVDGSTSA-----------LDKEKQETEYADWEV 59
V LN +NY W +F+ F+ G+ L G V GS SA + E+ E+ W
Sbjct: 17 VTLNQQNYILWKSQFESFLSGQGLLGFVTGSISAPAQTRSVTHNNVTSEEPNPEFYTWHQ 76
Query: 60 KDNQVLAWIIRFVDPNIVLNLRPFSTAAKMWAYLKKIYNQNNTARRFQLEHDIAIFQQEI 119
D V +W++ +I+ + T+ ++W L +N+ +++R F+L+ + +++
Sbjct: 77 TDQVVKSWLLGSFAEDILSVVVNCFTSHQVWLTLANHFNRVSSSRLFELQRRLQTLEKKD 136
Query: 120 LSISEFYSQFMNLWADYTDIVYGSVSTEGLTSVQT-VHETTK*DQFLMKLRSDFEGIRTN 178
++ F ++ + L SV + V E K L L ++E I+T
Sbjct: 137 NTMEVFLKDLKHI-------------CDQLASVGSPVPEKMKIFSALNGLGREYEPIKTT 183
Query: 179 LMNRATVP---S*DACLNELLREERRL---LTLATMEQHKSASLPVA----YVVQEKPRG 228
+ N S D ++L + RL +T T+ H + ++ + Y + +G
Sbjct: 184 IENSVDSNPSLSLDEVASKLRGYDDRLQSYVTEPTISPHVAFNVTHSDSGYYHNNNRGKG 243
Query: 229 RDLSAV--QCFCCKGFGHYASNCPRKS---------CNYCKKDGHVIKECPIRPPKKNAT 277
R S F +G G + P C C K GH +C R
Sbjct: 244 RSNSGSGKSSFSTRGRGFHQQISPTSGSQAGNSGLVCQICGKAGHHALKCWHR------- 296
Query: 278 TFTTSVHSPIAPSFVDIANVQHNAPTPVQALTPEIVEHMIILAFSALGISGKHSPNSSPW 337
F S P +A + + I+ + W
Sbjct: 297 -FDNSYQHEDLP-----------------------------MALATMRITDVTDHHGHEW 326
Query: 338 YFDYGASNHMANNAEALTNITQNFGNLKIQVANGNHLPITAIGDISTS-------LNDVY 390
D AS H+ NN L G+ I VA+GN LPIT G S + L +V
Sbjct: 327 IPDSAASAHVTNNRHVLQQSQPYHGSDSIMVADGNFLPITHTGSGSIASSSGKIPLKEVL 386
Query: 391 VSPGLTSNLIFVGQLV-DNDCRVAFSKSGCLVQDQHSGKLIARGPKVGRLFPLCFSMSPC 449
V P + +L+ V +L D C V F + D+ + KL+ G L+ L
Sbjct: 387 VCPDIVKSLLSVSKLTSDYPCSVEFDADSVRINDKATKKLLVMGRNRDGLYSL-----EE 441
Query: 450 SSLPFVSCHSATVVNFELWHKRLGHPNSNVLYELLQSG--VLGNKETPSLSTIKFDCTYC 507
L + + E+WH+RLGH N+ VL++L S ++ NK +K C C
Sbjct: 442 PKLQVLYSTRQNSASSEVWHRRLGHANAEVLHQLASSKSIIIINK------VVKTVCEAC 495
Query: 508 KLGKSKILPFPNHQSNISQTFDMIHSDLWGITPVISHANYKYFVTFIDDFSRFTWVYFLR 567
LGKS LPF N S+ + IH DLWG +P S ++Y+V FID +SRFTW Y L+
Sbjct: 496 HLGKSTRLPFMLSTFNASRPLERIHCDLWGPSPTSSVQGFRYYVVFIDHYSRFTWFYPLK 555
Query: 568 SKDEVFSAFKFFHAYVETQFSSKIKILRSDNGG 600
K + FS F F VE Q KIKI + D GG
Sbjct: 556 LKSDFFSTFVMFQKLVENQLGHKIKIFQCDGGG 588
>At2g07010 putative retroelement pol polyprotein
Length = 1413
Score = 182 bits (463), Expect = 4e-46
Identities = 163/626 (26%), Positives = 268/626 (42%), Gaps = 66/626 (10%)
Query: 11 VRLNGKNYSAWAFEFQIFVKGKSLWGHVDGSTSALDKEKQETEYADWEVKDNQVLAWIIR 70
V L G NY+ W+ + ++ K G ++GS S + + Y +W+ ++ ++ WI
Sbjct: 42 VMLTGDNYNEWSTKMLNALQAKRKTGFINGSISKPPLDNPD--YENWQAVNSMIVGWIRA 99
Query: 71 FVDPNIVLNLRPFSTAAKMWAYLKKIYNQNNTARRFQLEHDIAIFQQEILSISEFYSQFM 130
++P + + A ++W+ LK+ ++ N Q++ +A +Q+ + ++Y +
Sbjct: 100 SIEPKVKSTVTFICDAHQLWSELKQRFSVGNKVHVHQIKTQLAACRQDGQPVIDYYGRLC 159
Query: 131 NLWADYTDIVYGSVSTEGLTSVQTV------HETTK*DQFLMKLR-SDFEGIRTNLMNRA 183
LW ++ +V GL + E K QF++ L S F G+ L+
Sbjct: 160 KLWEEFQIYKPITVCKCGLCTCGATLEPSKEREEEKIHQFVLGLDDSRFGGLSATLIAMD 219
Query: 184 TVPS*DACLNELLREERRLLTLATMEQHKSASLPVAYVVQEKPRGRDLSAVQCFCCKGFG 243
PS + ++REE+RL ++ EQ +SA + + GR S++
Sbjct: 220 PFPSLGEIYSRVVREEQRLASVQIREQQQSAIGFLTRQSEVTADGRTDSSI--------- 270
Query: 244 HYASNCPRKSCNYCKKDGHVIKEC------------------PIRPPKKNATTFTTSVHS 285
S C++C + GH K+C + + S +S
Sbjct: 271 -IKSRDRSVLCSHCGRSGHEKKDCWQIVGFPDWWTERTNGGGRGSSSRGRGGRSSGSNNS 329
Query: 286 PIAPSFVDIANVQHNAPTPVQALTPE---IVEHMIILAFSALG--ISGKHSPNSSPWYFD 340
V A+ + +P TP+ ++ MI + +SGK D
Sbjct: 330 GRGRGQVTAAHATTSNLSPFPEFTPDQLRVITQMIQNKNNGTSDKLSGKMKLGDV--ILD 387
Query: 341 YGASNHMANNAEALTNITQNFGNLKIQVANGNHLPITAIGDI----STSLNDVYVSPGLT 396
GAS+HM LTNI + + A+G ++G + SL++V P L
Sbjct: 388 TGASHHMTGQLSLLTNIV-TIPSCSVGFADGRKTFAISMGTFKLSETVSLSNVLYVPALN 446
Query: 397 SNLIFVGQLVDN-DCRVAFSKSGCLVQDQHSGKLIARGPKVGRLFPLCFSMSPCSSLPFV 455
+LI V +LV C F+ + C++QD+ S LI G + ++ L + +
Sbjct: 447 CSLISVSKLVKQIKCLALFTDTICVLQDRFSRTLIGTGEERDGVYYLTDAAT-------T 499
Query: 456 SCHSATVV-NFELWHKRLGHPNSNVLYEL-LQSGVLGNKETPSLSTIKFDCTYCKLGKSK 513
+ H + + LWH+RLGHP+ +VL L L SG S S C C K
Sbjct: 500 TVHKVDITTDHALWHQRLGHPSFSVLSSLPLFSG-------SSCSVSSRSCDVCFRAKQT 552
Query: 514 ILPFPNHQSNISQTFDMIHSDLWGITPVISHANYKYFVTFIDDFSRFTWVYFLRSKDEVF 573
FP+ + + F +IH D+WG V S YF+T +DDFSR W Y L +K EV
Sbjct: 553 REVFPDSSNKSTDCFSLIHCDVWGPYRVPSSCGAVYFLTIVDDFSRSVWTYLLLAKSEVR 612
Query: 574 SAFKFFHAYVETQFSSKIKILRSDNG 599
S F AY E QF +KI+RSDNG
Sbjct: 613 SVLTNFLAYTEKQFGKSVKIIRSDNG 638
>At4g10690 retrotransposon like protein
Length = 1515
Score = 181 bits (459), Expect = 1e-45
Identities = 148/588 (25%), Positives = 252/588 (42%), Gaps = 94/588 (15%)
Query: 45 LDKEKQETEYADWEVKDNQVLAWIIRFVDPNIVLNLRPFSTAAKMWAYLKKIYNQNNTAR 104
+ E+ E+ W D V AWI + + + ++A ++W L + +N+ +T R
Sbjct: 60 IQSEEANQEFLKWTRIDQLVKAWIFGSLSEEALKVVIGLNSAQEVWLGLARRFNRFSTTR 119
Query: 105 RFQLEHDIAIFQQEILSISEFYSQFMNLWADYTDIVYGSVSTEGLTSVQTVHETTK*DQF 164
++ L+ + + ++ + S+ N+ I + E + V
Sbjct: 120 KYDLQKRLGTCSKAGKTMDAYLSEVKNICDQLDSIGFPVTEQEKIFGV------------ 167
Query: 165 LMKLRSDFEGIRTNLMNRATV---PS*DACLNELLREERRLLTLATMEQ---HKSASLPV 218
L L ++E I T + + V P D + +L + +L T + H +
Sbjct: 168 LNGLGKEYESIATVIEHSLDVYPGPCFDDVVYKLTTFDDKLSTYTANSEVTPHLAFYTDK 227
Query: 219 AYVVQEKPRGR-----DLSAVQCFCCKGFGHY----------ASNCPRKSCNYCKKDGHV 263
+Y + R + + +G G + + N + +C C+K GH
Sbjct: 228 SYSSRGNNNSRGGRYGNFRGRGSYSSRGRGFHQQFGSGSNNGSGNGSKPTCQICRKYGHS 287
Query: 264 IKECPIRPPKKNATTFTTSVHSPIAPSFVDIANVQHNAPTPVQALTPEIVEHMIILAFSA 323
+C T P D+ N AF+A
Sbjct: 288 AFKC------------YTRFEENYLPE--DLPN-----------------------AFAA 310
Query: 324 LGISGKHSPNSSPWYFDYGASNHMANNAEALTNITQNFGNLKIQVANGNHLPITAIGDIS 383
+ +S ++ +S W D A+ H+ N + L N G+ + V NG+ LPIT IG I
Sbjct: 311 MRVSDQNQASSHEWLPDSAATAHITNTTDGLQNSQTYSGDDSVIVGNGDFLPITHIGTIP 370
Query: 384 TS-------LNDVYVSPGLTSNLIFVGQLVDN-DCRVAFSKSGCLVQDQHSGKLIARGPK 435
+ L DV V PG+T +L+ V +L D+ C F +++D+ + +L+ +G K
Sbjct: 371 LNISQGTLPLEDVLVCPGITKSLLSVSKLTDDYPCSFTFDSDSVVIKDKRTQQLLTQGNK 430
Query: 436 VGRLFPLCFSMSPCSSLPFVSCHSATVVNF--ELWHKRLGHPNSNVLYELLQS-GVLGNK 492
L+ L +PF + +S + E+WH+RLGHPN VL L+++ ++ NK
Sbjct: 431 HKGLYVL-------KDVPFQTYYSTRQQSSDDEVWHQRLGHPNKEVLQHLIKTKAIVVNK 483
Query: 493 ETPSLSTIKFDCTYCKLGKSKILPFPNHQSNISQTFDMIHSDLWGITPVISHANYKYFVT 552
+ ++ C C++GK LPF + S+ + IH DLWG PV S ++Y+V
Sbjct: 484 TSSNM------CEACQMGKVCRLPFVASEFVSSRPLERIHCDLWGPAPVTSAQGFQYYVI 537
Query: 553 FIDDFSRFTWVYFLRSKDEVFSAFKFFHAYVETQFSSKIKILRSDNGG 600
FID++SRFTW Y L+ K + FS F F VE Q+ KI + + D GG
Sbjct: 538 FIDNYSRFTWFYPLKLKSDFFSVFVLFQQLVENQYQHKIAMFQCDGGG 585
>At1g26990 polyprotein, putative
Length = 1436
Score = 171 bits (433), Expect = 1e-42
Identities = 167/653 (25%), Positives = 267/653 (40%), Gaps = 109/653 (16%)
Query: 13 LNGKNYSAWAFEFQIFVKGKSLWGHVDGSTSALDKEKQETEYADWEVKDNQVLAWIIRFV 72
L+G NY++W+ +I + K+ G VDGS L ++ + W ++ V
Sbjct: 75 LDGSNYNSWSIAMRISLDAKNKLGFVDGSL--LRPSVDDSTFRIWSRCNSMV-------- 124
Query: 73 DPNIVLNLRPFSTAAKMWAYLKKIYNQNNTARRFQLEHDIAIFQQEILSISEFYSQFMNL 132
NN RR+QLE + QQ L +S ++++ L
Sbjct: 125 ---------------------------NNLPRRYQLEQAVMTLQQGKLDLSTYFTKKKTL 157
Query: 133 WADYTDIVYGSVSTEGLTSVQTV---HETTK*DQFLMKLRSDFEGIRTNLMNRATVPS*D 189
W + SV V+ + ET++ QFLM L DF IR+ + N P +
Sbjct: 158 WEQLANTKSRSVKKCDCDQVKELLEEAETSRVIQFLMGLSDDFNTIRSQIFNMKPRPGLN 217
Query: 190 ACLNELLREERRLLTLATMEQHKSASLPVAYVVQEKPRGRDLSAV--------QCFCCKG 241
N L ++E + L + S S P A+ Q ++ + +C C
Sbjct: 218 EIYNMLDQDESQRLVGFAAKSVPSPS-PAAFQTQGVLNDQNTILLAQGNFKKPKCTHCNR 276
Query: 242 FGHYASNC----------PRKSCNYCKKDGHVIKECPIR---PPKKNATT---------- 278
GH C PR N ++ I PP +AT
Sbjct: 277 IGHTVDKCYKVHGYPPGHPRAKENTYVGSTNLASTDQIETQAPPTMSATGHETMSNDHIQ 336
Query: 279 -----FTTSVHSPIAPSFVDIANVQHNAPTP-VQALTPEIVEHMIILAFSALGISG---- 328
+T + SP S D A + P P + +T + + S I+G
Sbjct: 337 QLISYLSTKLQSPSITSCFDKAIASSSNPVPSISQITDKAIASSSNPVPSISQITGTFFS 396
Query: 329 -------KHSPNSSP---------WYFDYGASNHMANNAEALTNITQNFGNLKIQVANGN 372
+ +S P W D GAS+H+ + L + + +++ NG+
Sbjct: 397 LYDSTYYEMLTSSIPIETELSLRAWVIDSGASHHVTHERN-LYHTYKALDRTFVRLPNGH 455
Query: 373 HLPITAIGDI----STSLNDVYVSPGLTSNLIFVGQLVDN-DCRVAFSKSGCLVQDQHSG 427
+ I G I + SL++V P NL+ V L +V+F+ C++Q
Sbjct: 456 TVKIEGTGFIQLTDALSLHNVLFIPEFKFNLLSVSVLTKTLQSKVSFTSDECMIQALTKE 515
Query: 428 KLIARGPKVGRLFPLCF--SMSPCSSLPFVSCHSATVVNFELWHKRLGHPNSNVLYELLQ 485
++ +G +VG L+ L S+ SS P S S+ E+WHKRLGHP+ + L
Sbjct: 516 LMLGKGSQVGNLYILNLDKSLVDVSSFPGKSVCSSVKNESEMWHKRLGHPSFAKIDTLSD 575
Query: 486 SGVLGNKETPSLSTIKFDCTYCKLGKSKILPFPNHQSNISQTFDMIHSDLWGITPVISHA 545
+L ++ S+ C C L K K LPF + + F+++H D WG V +
Sbjct: 576 VLMLPKQKINKDSS---HCHVCHLSKQKHLPFKSVNHIREKAFELVHIDTWGPFSVPTVD 632
Query: 546 NYKYFVTFIDDFSRFTWVYFLRSKDEVFSAFKFFHAYVETQFSSKIKILRSDN 598
+Y+YF+T +DDFSR TW+Y L+ K +V + F F VETQ+ +K+ +RSDN
Sbjct: 633 SYRYFLTIVDDFSRATWIYLLKQKSDVLTVFPSFLKMVETQYHTKVCSVRSDN 685
>At4g28900 putative protein
Length = 1415
Score = 170 bits (431), Expect = 2e-42
Identities = 104/292 (35%), Positives = 160/292 (54%), Gaps = 27/292 (9%)
Query: 320 AFSALGISGKHSPNSSPWYFDYGASNHMANNAEALTNITQNFGNLKIQVANGNHLPITAI 379
AF+A+ +S + S+PW D GA++H+ N+ L + G + V N + LPIT I
Sbjct: 279 AFAAMRVSDQ---KSNPWVTDSGATSHITNSTSQLQSAQPYSGEDSVIVGNSDFLPITHI 335
Query: 380 GD-ISTS------LNDVYVSPGLTSNLIFVGQLV-DNDCRVAFSKSGCLVQDQHSGKLIA 431
G + TS L DV V P +T +L+ V +L D C + F G +V+D+ + +L+
Sbjct: 336 GSAVLTSNQGNLPLRDVLVCPNITKSLLSVSKLTSDYPCVIEFDSDGVIVKDKLTKQLLT 395
Query: 432 RGPKVGRLFPLCFSMSPCSSLPFVSCHSAT--VVNFELWHKRLGHPNSNVLYELLQS-GV 488
+G + L+ L + F++C+S+ + E+WH RLGHPN +VL +LL++ +
Sbjct: 396 KGTRHNDLYLL-------ENPKFMACYSSRQQATSDEVWHMRLGHPNQDVLQQLLRNKAI 448
Query: 489 LGNKETPSLSTIKFDCTYCKLGKSKILPFPNHQSNISQTFDMIHSDLWGITPVISHANYK 548
+ +K + SL C C++GK LPF + S+ + +H DLWG PV+S ++
Sbjct: 449 VISKTSHSL------CDACQMGKICKLPFASSDFVSSRLLERVHCDLWGPAPVVSSQGFR 502
Query: 549 YFVTFIDDFSRFTWVYFLRSKDEVFSAFKFFHAYVETQFSSKIKILRSDNGG 600
Y+V FID++SRFTW Y LR K + FS F F VE Q KI + D GG
Sbjct: 503 YYVIFIDNYSRFTWFYPLRLKSDFFSVFLTFQKMVENQCQQKIASFQCDGGG 554
Score = 45.4 bits (106), Expect = 1e-04
Identities = 26/126 (20%), Positives = 60/126 (46%), Gaps = 11/126 (8%)
Query: 11 VRLNGKNYSAWAFEFQIFVKGKSLWGHVDGS------TSALDKEKQETE-----YADWEV 59
++L+ NY W +F+ ++ + L G V G+ T ++ Q TE + W
Sbjct: 19 LKLSTANYLLWKIQFETWLNNQRLLGFVTGANPCPNATRSIRNGDQVTEATNPDFLTWVQ 78
Query: 60 KDNQVLAWIIRFVDPNIVLNLRPFSTAAKMWAYLKKIYNQNNTARRFQLEHDIAIFQQEI 119
D +++ W++ + + + ++ T+ ++W L K YN+ + +R+ L+ + +
Sbjct: 79 NDQKIMGWLLGSLSEDALRSVYGLHTSREVWFSLAKKYNRVSASRKSDLQRRLNPVSKNE 138
Query: 120 LSISEF 125
S+ E+
Sbjct: 139 KSMLEY 144
>At2g14930 pseudogene
Length = 1149
Score = 169 bits (429), Expect = 4e-42
Identities = 165/623 (26%), Positives = 258/623 (40%), Gaps = 100/623 (16%)
Query: 11 VRLNGKNYSAWAFEFQIFVKGKSLWGHVDGSTSA------------LDKEKQETEYADWE 58
V+L +NY W +F+ F+ G+ L G V+G+ +A + + +Y W
Sbjct: 21 VKLTDRNYILWKSQFESFLSGQGLLGFVNGAYAAPTGTVSGPQDAGVTEAIPNPDYQAWF 80
Query: 59 VKDNQVLAWIIRFVDPNIVLNLRPFSTAAKMWAYLKKIYNQNNTARRFQLEHDIAIFQQE 118
D V++ I ++V+ + T+ ++W L K +N+ +++R F+L+ + +E
Sbjct: 81 RSDQVVMSEDIL----SVVVGSK---TSHEVWMNLAKHFNRISSSRIFELQRRLHSLSKE 133
Query: 119 ILSISEFYSQFMNLWADYTDIVYGSVSTEGLTSVQTVHETTK*DQFLMKLRSDFEGIRTN 178
++ E Y +++ D V GS E + VH T+ ++E + T+
Sbjct: 134 GKTMEE-YLRYLKTICDQLASV-GSPVAEKMKIFAMVHGLTR----------EYEPLITS 181
Query: 179 L---MNRATVPS*DACLNELLREERRLLTLATMEQHKSASLPVAYVVQEKPRGRDLSAVQ 235
L ++ PS + + L + RL + + GR+
Sbjct: 182 LEGTLDAFPGPSYEDVVYRLKNFDDRLQGYTVTDVSPHLAFNTFRSSNRGRGGRNNRGKG 241
Query: 236 CFCCKGFGHY---------ASNCPRKSCNYCKKDGHVIKECPIRPPKKNATTFTTSVHSP 286
F +G G S + C C K GH +C R
Sbjct: 242 NFSTRGRGFQQQFSSSSSSVSASEKPMCQICGKRGHYALQCWHR---------------- 285
Query: 287 IAPSFVDIANVQHNAPTPVQALTPEIVEHMIILAFSALGISGKHSPNSSPWYFDYGASNH 346
F D + QH+ AFSAL I+ + S W D A+ H
Sbjct: 286 ----FDD--SYQHSEAAAA--------------AFSALHITDVS--DDSGWVPDSAATAH 323
Query: 347 MANNAEALTNITQNFGNLKIQVANGNHLPITAIGDI---STS----LNDVYVSPGLTSNL 399
+ NN+ L + GN + ++GN LPIT IG STS L DV V P + +L
Sbjct: 324 ITNNSSRLQQMQPYLGNDTVMASDGNFLPITHIGSANLPSTSGNLPLKDVLVCPNIAKSL 383
Query: 400 IFVGQLV-DNDCRVAFSKSGCLVQDQHSGKLIARGPKVGRLFPLCFSMSPCSSLPFVSCH 458
+ V +L D C F G LV+D+ + K++ +G + + F S
Sbjct: 384 LSVSKLTKDYPCSFTFDADGVLVKDKATCKVLTKGSSTSEGL---YKLENPKFQMFYSTR 440
Query: 459 SATVVNFELWHKRLGHPNSNVLYELLQSGVLG-NKETPSLSTIKFDCTYCKLGKSKILPF 517
+ E+WH RLGHPN VL L + NK T + C C+LGKS LPF
Sbjct: 441 QVKATD-EVWHMRLGHPNPQVLQLLANKKAIQINKSTSKM------CESCRLGKSSRLPF 493
Query: 518 PNHQSNISQTFDMIHSDLWGITPVISHANYKYFVTFIDDFSRFTWVYFLRSKDEVFSAFK 577
S+ + +H DLWG PV S ++Y+V FID+ SRF W Y L+ K + S F
Sbjct: 494 IASDFIASRPLERVHCDLWGPAPVSSIQGFQYYVIFIDNRSRFCWFYPLKHKSDFCSLFM 553
Query: 578 FFHAYVETQFSSKIKILRSDNGG 600
F ++VE +KI +SD GG
Sbjct: 554 KFQSFVENLLQTKIGTFQSDGGG 576
>At4g16870 retrotransposon like protein
Length = 1474
Score = 164 bits (414), Expect = 2e-40
Identities = 150/622 (24%), Positives = 263/622 (42%), Gaps = 87/622 (13%)
Query: 10 LVRLNGKNYSAWAFEFQIFVKGKSLWGHVDGS-------TSALDKEKQETEYADWEVKDN 62
+ +L NY W+ + + G L GH+DGS + + +Y W+ +D
Sbjct: 31 VTKLTSNNYLMWSLQIHALLDGYELAGHLDGSIETPAPTLTTNNVVSANPQYTLWKRQDR 90
Query: 63 QVLAWIIRFVDPNIVLNLRPFSTAAKMWAYLKKIYNQNNTARRFQLEHDIAIFQQEILSI 122
+ + +I + P + + + A+++W L Y +++ QL I ++ +I
Sbjct: 91 LIFSALIGAISPPVQPLVSRATKASQIWKTLTNTYAKSSYDHIKQLRTQIKQLKKGTKTI 150
Query: 123 SEFYSQFMNLWADYTDIVYGSVSTEGLTSVQTVHETTK*DQFLMKLRSDFEGIRTNLMNR 182
E+ L + + HE + ++ L L D++ + + +
Sbjct: 151 DEYVLSHTTL-----------LDQLAILGKPMEHE-EQVERILEGLPEDYKTVVDQIEGK 198
Query: 183 ATVPS*DACLNELLREERRLLTLATMEQHKSASLPV-AYVVQEKPRGRDLSAVQCFCCKG 241
PS L+ E +LL+ A + S+SLP+ A V Q++ + + Q
Sbjct: 199 DNTPSITEIHERLINHEAKLLSTAAL---SSSSLPMSANVAQQRHHNNNRNNNQNKNRTQ 255
Query: 242 FGHYASNC-----------PRK----SCNYCKKDGHVIKECPIRPPKKNATTFTTSVHSP 286
Y +N P K C C GH + CP + +++ + S +P
Sbjct: 256 GNTYTNNWQPSANNKSGQRPFKPYLGKCQICNVQGHSARRCPQLQAMQPSSSSSASTFTP 315
Query: 287 IAPSFVDIANVQHNAPTPVQALTPEIVEHMIILAFSALGISGKHSPNSSPWYFDYGASNH 346
P AN+ AP ++ W D GA++H
Sbjct: 316 WQPR----ANLAMGAPY-----------------------------TANNWLLDSGATHH 342
Query: 347 MANNAEALTNITQNFGNLKIQVANGNHLPITAIGDI-------STSLNDVYVSPGLTSNL 399
+ ++ AL + Q + + +A+G L IT G +LN V P + NL
Sbjct: 343 ITSDLNALA-LHQPYNGDDVMIADGTSLKITKTGSTFLPSNARDLTLNKVLYVPDIQKNL 401
Query: 400 IFVGQLVD-NDCRVAFSKSGCLVQDQHSGKLIARGPKVGRLFPLCFSMSPCSSLPFVSCH 458
+ V +L + N V F + V+D ++G L+ +G L+ + +P ++ F +
Sbjct: 402 VSVYRLCNTNQVSVEFFPASFQVKDLNTGTLLLQGRTKDELYEWPVT-NPKATALFTTPS 460
Query: 459 SATVVNFELWHKRLGHPNSNVLYELLQSGVLGNKETPSLSTIKFDCTYCKLGKSKILPFP 518
T ++ WH RLGHP+S++L L+ L + S K C+ C + KS LPF
Sbjct: 461 PKTTLS--SWHSRLGHPSSSILNTLISKFSLPVSVSAS---NKLACSDCFINKSHKLPFS 515
Query: 519 NHQSNISQTFDMIHSDLWGITPVISHANYKYFVTFIDDFSRFTWVYFLRSKDEVFSAFKF 578
+ + I SD+W ++P++S NYKY++ +D +R+TW+Y L+ K +V S F
Sbjct: 516 ISSIKSTSPLEYIFSDVW-MSPILSPDNYKYYLVLVDHHTRYTWLYPLQQKSQVKSTFIA 574
Query: 579 FHAYVETQFSSKIKILRSDNGG 600
F A VE +F +KI+ L SDNGG
Sbjct: 575 FKALVENRFQAKIRTLYSDNGG 596
>At3g60170 putative protein
Length = 1339
Score = 164 bits (414), Expect = 2e-40
Identities = 160/620 (25%), Positives = 263/620 (41%), Gaps = 76/620 (12%)
Query: 2 STEKY-EVLLVRLNGKNYSAWAFEFQIFVKGKSLWGHVDGSTSALD------KEKQETEY 54
S+EK+ + + R +G Y W+ + F++ + LW V+ A+ E Q +
Sbjct: 3 SSEKFVQPAIPRFDGY-YDFWSMTMENFLRSRELWRLVEEGIPAIVVGTTPVSEAQRSAV 61
Query: 55 ADWEVKDNQVLAWIIRFVDPNIVLNLRPFSTAAKMWAYLKKIYNQNNTARRFQLEHDIAI 114
+ ++KD +V ++ + +D I+ + ST+ +W +KK Y + +R QL+
Sbjct: 62 EEAKLKDLKVKNFLFQAIDREILETILDKSTSKAIWESMKKKYQGSTKVKRAQLQALRKE 121
Query: 115 FQQEILSISEFYSQFMNLWADYTDIVYGSVSTEGLTSVQTVHETTK*DQFLMKLRSDFEG 174
F E+L++ E + ++ + T V + T G + + ++T + L L F
Sbjct: 122 F--ELLAMKE--GEKIDTFLGRTLTVVNKMKTNG----EVMEQSTIVSKILRSLTPKFNY 173
Query: 175 IRTNL--MNRATVPS*DACLNELLREERRLLTLATMEQHKSASLPVAYVVQEKP---RGR 229
+ ++ N + S D LL E+RL EQ +L V + +E+P RGR
Sbjct: 174 VVCSIEESNDLSTLSIDELHGSLLVHEQRLNGHVQEEQ----ALKVTH--EERPSQGRGR 227
Query: 230 DLSAVQCFCCKGFGHYASNCPRKSCNYCKKDGHVIKECPIRPPKKNATTFTTSVHSPIAP 289
+ +G G +N C C GH ECP +KNA
Sbjct: 228 GVFRGSRGRGRGRGRSGTNRAIVECYKCHNLGHFQYECP--EWEKNA------------- 272
Query: 290 SFVDIANVQHNAPTPVQALTPEIVEHMIILAFSALGISGKHSPNSSPWYFDYGASNHMAN 349
++ ++ E E ++++A+ + + W+ D G SNHM
Sbjct: 273 NYAEL----------------EEEEELLLMAY----VEQNQANRDEVWFLDSGCSNHMTG 312
Query: 350 NAEALTNITQNFGNLKIQVANGNHLPITAIGDISTSLN-------DVYVSPGLTSNLIFV 402
+ E + + + F N +++ N + + G + +N +VY P L +NL+ +
Sbjct: 313 SKEWFSELEEGF-NRTVKLGNDTRMSVVGKGSVKVKVNGVTQVIPEVYYVPELRNNLLSL 371
Query: 403 GQLVDNDCRVAFSKSGCLVQDQHSGKLIARGPKVGRLFPLCFSMSPCSSLPFVSCHSATV 462
GQL + + C V G ++ R+F L S +SL +
Sbjct: 372 GQLQERGLAILIRDGTCKVYHPSKGAIMETNMSGNRMFFLLASKPQKNSLCLQTEEVMDK 431
Query: 463 VNFELWHKRLGHPNSNVLYELLQSG-VLGNKETPSLSTIKFDCTYCKLGKSKILPFPNHQ 521
N LWH R GH N L L V+G P L K C C GK
Sbjct: 432 EN-HLWHCRFGHLNQEGLKLLAHKKMVIG---LPILKATKEICAICLTGKQHRESMSKKT 487
Query: 522 SNISQT-FDMIHSDLWGITPVISHANYKYFVTFIDDFSRFTWVYFLRSKDEVFSAFKFFH 580
S S T ++HSD+ G ISH+ +Y ++FIDDF+R TWVYFL K E F+ FK F
Sbjct: 488 SWKSSTQLQLVHSDICGPITPISHSGKRYILSFIDDFTRKTWVYFLHEKSEAFATFKIFK 547
Query: 581 AYVETQFSSKIKILRSDNGG 600
A VE + + + LR+D GG
Sbjct: 548 ASVEKEIGAFLTCLRTDRGG 567
>At4g02960 putative polyprotein of LTR transposon
Length = 1456
Score = 156 bits (395), Expect = 3e-38
Identities = 149/623 (23%), Positives = 248/623 (38%), Gaps = 103/623 (16%)
Query: 10 LVRLNGKNYSAWAFEFQIFVKGKSLWGHVDGSTSALDKE-------KQETEYADWEVKDN 62
+ +L NY W+ + G L G +DGST + +Y W +D
Sbjct: 23 VTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTPMPPATIGTDAVPRVNPDYTRWRRQDK 82
Query: 63 QVLAWIIRFVDPNIVLNLRPFSTAAKMWAYLKKIYNQNNTARRFQLEHDIAIFQQEILSI 122
+ + I+ + ++ + +TAA++W L+KIY + QL Q +L
Sbjct: 83 LIYSAILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRFITRFDQLALLG- 141
Query: 123 SEFYSQFMNLWADYTDIVYGSVSTEGLTSVQTVHETTK*DQFLMKLRSDFEGIRTNLMNR 182
+ + + ++ L L D++ + + +
Sbjct: 142 ------------------------------KPMDHDEQVERVLENLPDDYKPVIDQIAAK 171
Query: 183 ATVPS*DACLNELLREERRLLTLATMEQHKSASLPVAYVVQEKPRGRDL----------- 231
T PS L+ E +LL L + E + V + R ++
Sbjct: 172 DTPPSLTEIHERLINRESKLLALNSAEVVPITANVVTHRNTNTNRNQNNRGDNRNYNNNN 231
Query: 232 SAVQCFCCKGFGHYASNCPRKS----CNYCKKDGHVIKECPIRPPKKNATTFTTSVHSPI 287
+ + G + N K C C GH K CP + + +TT SP
Sbjct: 232 NRSNSWQPSSSGSRSDNRQPKPYLGRCQICSVQGHSAKRCP-QLHQFQSTTNQQQSTSPF 290
Query: 288 APSFVDIANVQHNAPTPVQALTPEIVEHMIILAFSALGISGKHSPNSSPWYFDYGASNHM 347
P + AN+ N+P N++ W D GA++H+
Sbjct: 291 TP-WQPRANLAVNSPY-----------------------------NANNWLLDSGATHHI 320
Query: 348 ANNAEALTNITQNFGNLKIQVANGNHLPITAIGDIST-------SLNDVYVSPGLTSNLI 400
++ L+ G + +A+G+ +PIT G S LN V P + NLI
Sbjct: 321 TSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTSSRSLDLNKVLYVPNIHKNLI 380
Query: 401 FVGQLVD-NDCRVAFSKSGCLVQDQHSGKLIARGPKVGRLFPLCFSMSPCSSLPFVSCHS 459
V +L + N V F + V+D ++G + +G L+ + S S+ C
Sbjct: 381 SVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQAVSMFASPCSK 440
Query: 460 ATVVNFELWHKRLGHPNSNVLYELLQSGVLGNKETPSLSTIK--FDCTYCKLGKSKILPF 517
AT WH RLGHP+ +L + V+ N P L+ C+ C + KS +PF
Sbjct: 441 AT---HSSWHSRLGHPSLAIL-----NSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPF 492
Query: 518 PNHQSNISQTFDMIHSDLWGITPVISHANYKYFVTFIDDFSRFTWVYFLRSKDEVFSAFK 577
N S+ + I+SD+W +P++S NY+Y+V F+D F+R+TW+Y L+ K +V F
Sbjct: 493 SNSTITSSKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFI 551
Query: 578 FFHAYVETQFSSKIKILRSDNGG 600
F + VE +F ++I L SDNGG
Sbjct: 552 IFKSLVENRFQTRIGTLYSDNGG 574
>At1g44510 polyprotein, putative
Length = 1459
Score = 154 bits (390), Expect = 1e-37
Identities = 148/626 (23%), Positives = 257/626 (40%), Gaps = 89/626 (14%)
Query: 10 LVRLNGKNYSAWAFEFQIFVKGKSLWGHVDGS-------TSALDKEKQETEYADWEVKDN 62
+ +L NY W+ + + G L G++D S T+ + W+ +D
Sbjct: 30 VTKLTSTNYLMWSIQIHALLDGYDLAGYLDNSVVIPPETTTINSVVSANPSFTLWKRQDK 89
Query: 63 QVLAWIIRFVDPNIVLNLRPFSTAAKMWAYLKKIYNQNNTARRFQLEHDIAIFQQEILSI 122
+ + +I + P + + + ++++W+ L Y + + QL I + +I
Sbjct: 90 LIFSALIGAISPAVQSLVSRATNSSQIWSTLNNTYAKPSYGHIKQLRQQIQRLTKGTKTI 149
Query: 123 SEFYSQFMNLWADYTDIVYGSVSTEGLTSVQTVHETTK*DQFLMKLRSDFEGIRTNLMNR 182
E Y Q D I+ + E + L L +++ + + +
Sbjct: 150 DE-YVQSHTTRLDQLAILGKPMEHEEQV-----------EHILKGLPEEYKTVVDQIEGK 197
Query: 183 ATVPS*DACLNELLREERRLLTLATMEQHKSASLPV-AYVVQEKPRGRDLSAVQCFCCKG 241
P+ L+ E +LL+ E S+S P+ A VQ++ + + Q
Sbjct: 198 DNTPTITEIHERLINHESKLLS---DEVPPSSSFPMSANAVQQRNFNNNCNQNQHKNRYQ 254
Query: 242 FGHYASNCPRKS-------------------CNYCKKDGHVIKECPIRPPKKNATTFTTS 282
+ +N S C C GH + CP + + +S
Sbjct: 255 GNTHNNNTNTNSQPSTYNKSGQRTFKPYLGKCQICSVQGHSARRCPQLQAMQLPAS--SS 312
Query: 283 VHSPIAPSFVDIANVQHNAPTPVQALTPEIVEHMIILAFSALGISGKHSPNSSPWYFDYG 342
HSP P + AN+ +P ++PW D G
Sbjct: 313 AHSPFTP-WQPRANLAIGSPYA-----------------------------ANPWLLDSG 342
Query: 343 ASNHMANNAEALTNITQNFGNLKIQVANGNHLPITAIGDI-------STSLNDVYVSPGL 395
A++H+ ++ AL+ G + +A+G L I G +L+ V P +
Sbjct: 343 ATHHITSDLNALSLHQPYNGGEYVMIADGTGLTIKQTGSTFLPSQNRDLALHKVLYVPDI 402
Query: 396 TSNLIFVGQLVD-NDCRVAFSKSGCLVQDQHSGKLIARGPKVGRLFPLCFSMSPCSSLPF 454
NLI V +L + N V F + V+D ++G L+ +G L+ + P ++L F
Sbjct: 403 RKNLISVYRLCNTNQVSVEFFPASFQVKDLNTGTLLLQGRTKDDLYEWPVTNPPATAL-F 461
Query: 455 VSCHSATVVNFELWHKRLGHPNSNVLYELLQSGVLGNKETPSLSTIKFDCTYCKLGKSKI 514
S T ++ WH RLGHP++++L LL L S+ K C+ C + KS
Sbjct: 462 TSPSPKTTLSS--WHSRLGHPSASILNTLLSKFSL---PVSVASSNKTSCSDCLINKSHK 516
Query: 515 LPFPNHQSNISQTFDMIHSDLWGITPVISHANYKYFVTFIDDFSRFTWVYFLRSKDEVFS 574
LPF + S + I +D+W +P+ISH NYKY++ +D ++R+TW+Y L+ K +V +
Sbjct: 517 LPFATSSIHSSSPLEYIFTDVW-TSPIISHDNYKYYLVLVDHYTRYTWLYPLQQKSQVKA 575
Query: 575 AFKFFHAYVETQFSSKIKILRSDNGG 600
F F A VE +F +KI+ L SDNGG
Sbjct: 576 TFIAFKALVENRFQAKIRTLYSDNGG 601
>At1g59265 polyprotein, putative
Length = 1466
Score = 143 bits (361), Expect = 3e-34
Identities = 140/625 (22%), Positives = 260/625 (41%), Gaps = 86/625 (13%)
Query: 10 LVRLNGKNYSAWAFEFQIFVKGKSLWGHVDGSTSALDKE-------KQETEYADWEVKDN 62
+ +L NY W+ + G L G +DGST+ + +Y W+ +D
Sbjct: 23 VTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTDAAPRVNPDYTRWKRQDK 82
Query: 63 QVLAWIIRFVDPNIVLNLRPFSTAAKMWAYLKKIYNQNNTARRFQLEHDIAIFQQEILSI 122
+ + ++ + ++ + +TAA++W L+KIY + QL + + + +I
Sbjct: 83 LIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGTKTI 142
Query: 123 SEFYSQFMNLWADYTDIVYGSVSTEGLTSVQTVHETTK*DQFLMKLRSDFEGIRTNLMNR 182
++ + + ++ G + + + ++ L L +++ + + +
Sbjct: 143 DDYMQGLVTR--------FDQLALLG----KPMDHDEQVERVLENLPEEYKPVIDQIAAK 190
Query: 183 ATVPS*DACLNELLREERRLLTLATMEQHKSASLPVAY----VVQEKPRGR--------- 229
T P+ LL E ++L +++ + V++ G
Sbjct: 191 DTPPTLTEIHERLLNHESKILAVSSATVIPITANAVSHRNTTTTNNNNNGNRNNRYDNRN 250
Query: 230 DLSAVQCFCCKGFGHYASNCPRK----SCNYCKKDGHVIKECPIRPPKKNATTFTTSVHS 285
+ + + + + +N K C C GH K C F +SV+S
Sbjct: 251 NNNNSKPWQQSSTNFHPNNNQSKPYLGKCQICGVQGHSAKRC------SQLQHFLSSVNS 304
Query: 286 PIAPSFVDIANVQHNAPTPVQALTPEIVEHMIILAFSALGISGKHSPNSSPWYFDYGASN 345
P+P P + L + +S N+ W D GA++
Sbjct: 305 -------------QQPPSPFTPWQPR----------ANLALGSPYSSNN--WLLDSGATH 339
Query: 346 HMANNAEALTNITQNFGNLKIQVANGNHLPITAIGDISTS-------LNDVYVSPGLTSN 398
H+ ++ L+ G + VA+G+ +PI+ G S S L+++ P + N
Sbjct: 340 HITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKSRPLNLHNILYVPNIHKN 399
Query: 399 LIFVGQLVD-NDCRVAFSKSGCLVQDQHSGKLIARGPKVGRLFPLCFSMSPCSSLPFVSC 457
LI V +L + N V F + V+D ++G + +G L+ + S SL
Sbjct: 400 LISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASPS 459
Query: 458 HSATVVNFELWHKRLGHPNSNVLYELLQSGVLGNKETPSLS-TIKF-DCTYCKLGKSKIL 515
AT WH RLGHP ++L + V+ N L+ + KF C+ C + KS +
Sbjct: 460 SKAT---HSSWHARLGHPAPSIL-----NSVISNYSLSVLNPSHKFLSCSDCLINKSNKV 511
Query: 516 PFPNHQSNISQTFDMIHSDLWGITPVISHANYKYFVTFIDDFSRFTWVYFLRSKDEVFSA 575
PF N ++ + I+SD+W +P++SH NY+Y+V F+D F+R+TW+Y L+ K +V
Sbjct: 512 PFSQSTINSTRPLEYIYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKET 570
Query: 576 FKFFHAYVETQFSSKIKILRSDNGG 600
F F +E +F ++I SDNGG
Sbjct: 571 FITFKNLLENRFQTRIGTFYSDNGG 595
>At1g58889 polyprotein, putative
Length = 1466
Score = 143 bits (361), Expect = 3e-34
Identities = 140/625 (22%), Positives = 260/625 (41%), Gaps = 86/625 (13%)
Query: 10 LVRLNGKNYSAWAFEFQIFVKGKSLWGHVDGSTSALDKE-------KQETEYADWEVKDN 62
+ +L NY W+ + G L G +DGST+ + +Y W+ +D
Sbjct: 23 VTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTDAAPRVNPDYTRWKRQDK 82
Query: 63 QVLAWIIRFVDPNIVLNLRPFSTAAKMWAYLKKIYNQNNTARRFQLEHDIAIFQQEILSI 122
+ + ++ + ++ + +TAA++W L+KIY + QL + + + +I
Sbjct: 83 LIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGTKTI 142
Query: 123 SEFYSQFMNLWADYTDIVYGSVSTEGLTSVQTVHETTK*DQFLMKLRSDFEGIRTNLMNR 182
++ + + ++ G + + + ++ L L +++ + + +
Sbjct: 143 DDYMQGLVTR--------FDQLALLG----KPMDHDEQVERVLENLPEEYKPVIDQIAAK 190
Query: 183 ATVPS*DACLNELLREERRLLTLATMEQHKSASLPVAY----VVQEKPRGR--------- 229
T P+ LL E ++L +++ + V++ G
Sbjct: 191 DTPPTLTEIHERLLNHESKILAVSSATVIPITANAVSHRNTTTTNNNNNGNRNNRYDNRN 250
Query: 230 DLSAVQCFCCKGFGHYASNCPRK----SCNYCKKDGHVIKECPIRPPKKNATTFTTSVHS 285
+ + + + + +N K C C GH K C F +SV+S
Sbjct: 251 NNNNSKPWQQSSTNFHPNNNQSKPYLGKCQICGVQGHSAKRC------SQLQHFLSSVNS 304
Query: 286 PIAPSFVDIANVQHNAPTPVQALTPEIVEHMIILAFSALGISGKHSPNSSPWYFDYGASN 345
P+P P + L + +S N+ W D GA++
Sbjct: 305 -------------QQPPSPFTPWQPR----------ANLALGSPYSSNN--WLLDSGATH 339
Query: 346 HMANNAEALTNITQNFGNLKIQVANGNHLPITAIGDISTS-------LNDVYVSPGLTSN 398
H+ ++ L+ G + VA+G+ +PI+ G S S L+++ P + N
Sbjct: 340 HITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKSRPLNLHNILYVPNIHKN 399
Query: 399 LIFVGQLVD-NDCRVAFSKSGCLVQDQHSGKLIARGPKVGRLFPLCFSMSPCSSLPFVSC 457
LI V +L + N V F + V+D ++G + +G L+ + S SL
Sbjct: 400 LISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASPS 459
Query: 458 HSATVVNFELWHKRLGHPNSNVLYELLQSGVLGNKETPSLS-TIKF-DCTYCKLGKSKIL 515
AT WH RLGHP ++L + V+ N L+ + KF C+ C + KS +
Sbjct: 460 SKAT---HSSWHARLGHPAPSIL-----NSVISNYSLSVLNPSHKFLSCSDCLINKSNKV 511
Query: 516 PFPNHQSNISQTFDMIHSDLWGITPVISHANYKYFVTFIDDFSRFTWVYFLRSKDEVFSA 575
PF N ++ + I+SD+W +P++SH NY+Y+V F+D F+R+TW+Y L+ K +V
Sbjct: 512 PFSQSTINSTRPLEYIYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKET 570
Query: 576 FKFFHAYVETQFSSKIKILRSDNGG 600
F F +E +F ++I SDNGG
Sbjct: 571 FITFKNLLENRFQTRIGTFYSDNGG 595
>At1g47650 hypothetical protein
Length = 1409
Score = 137 bits (346), Expect = 2e-32
Identities = 91/319 (28%), Positives = 152/319 (47%), Gaps = 22/319 (6%)
Query: 289 PSFVDIANVQHNAPTPVQALTPEIVEHMIILAFSA----LGISGKHSPNSSPWYFDYGAS 344
P+ ++ V L E V H+ + LG + K D GA
Sbjct: 280 PAAFQVSEAMMATNNDVNMLCSEWVGHIAERCYKKHGFPLGFTPKGKGGDKSQVIDSGAI 339
Query: 345 NHMANNAEALTNITQNFGNLKIQVANGNHLPITAIGDISTS----LNDVYVSPGLTSNLI 400
+H++++ N+ + + + + G + I+ +G + + L ++ P NLI
Sbjct: 340 HHVSHDKSLFLNLDTSVVSA-VNLPAGPTVRISGVGTLRLNDDILLKNILFIPEFRLNLI 398
Query: 401 FVGQLVDN-DCRVAFSKSGCLVQDQHSGKLIARGPKVGRLFPLCFSMSPCSSLPFVSCHS 459
+ L D+ RV F K+ C +QD +++ +G ++ L+ L P VS ++
Sbjct: 399 SISSLTDDIGSRVIFDKTSCEIQDPIKARMLGQGRRIANLYVLDIED------PIVSVNA 452
Query: 460 ATVVNFELWHKRLGHPNSNVLYELLQSGVLGNKETPSLSTIKFDCTYCKLGKSKILPFPN 519
VV+ +WH+RLGH + L + S LG + + + C C L K + LPFP+
Sbjct: 453 --VVDISMWHRRLGHASLQRLDVISDS--LGTTKPKNKGSDY--CHVCHLAKQRKLPFPS 506
Query: 520 HQSNISQTFDMIHSDLWGITPVISHANYKYFVTFIDDFSRFTWVYFLRSKDEVFSAFKFF 579
++ FD++H D+WG V + YKYF+T +DD SR TW+Y LR+K EV + F F
Sbjct: 507 QNKVCNEIFDLLHIDIWGPFSVETVDGYKYFLTIVDDHSRATWIYLLRNKSEVLTVFPAF 566
Query: 580 HAYVETQFSSKIKILRSDN 598
VE Q+ ++K +RSDN
Sbjct: 567 IEQVENQYKVRVKAVRSDN 585
Score = 71.2 bits (173), Expect = 2e-12
Identities = 61/246 (24%), Positives = 104/246 (41%), Gaps = 17/246 (6%)
Query: 12 RLNGKNYSAWAFEFQIFVKGKSLWGHVDGSTSA-LDKEKQETEYADWEVKDNQVLAWIIR 70
RL+ NY W I + K+ G +DG+ L+ +K + W + V +W++
Sbjct: 81 RLDETNYGDWNVAMLISLDAKNKSGFIDGTLPRPLESDKN---FRLWSRCKSMVKSWLLN 137
Query: 71 FVDPNIVLNLRPFSTAAKMWAYLKKIYNQNNTARRFQLEHDIAIFQQEILSISEFYSQFM 130
V P I ++ + A+ +W L +N N R + L +I F+Q LS+SE+Y++
Sbjct: 138 SVSPQIYRSILRMNDASDIWRDLHSRFNVTNLPRTYNLTQEIQDFRQGTLSLSEYYTRLK 197
Query: 131 NLW--ADYTDIVYGSVSTEGLTSVQTVHETTK*DQFLMKLRSDFEGIRTNLMNRATVPS* 188
LW + T+ + +Q E K + L L + IR ++ + +PS
Sbjct: 198 TLWDQLESTEELDDPCICGKAMRLQQKAEQAKIVKLLAGLNDSYAIIRRQIIAKKALPS- 256
Query: 189 DACLNELLREERRLLTLATMEQHKS--ASLPVAYVVQEKPRGRDLSAVQCFCCKGFGHYA 246
L E +L +Q S + P A+ V E + + V C + GH A
Sbjct: 257 -------LAEVYHILDQDNSQQGFSNVVAPPAAFQVSEAMMATN-NDVNMLCSEWVGHIA 308
Query: 247 SNCPRK 252
C +K
Sbjct: 309 ERCYKK 314
>At3g61330 copia-type polyprotein
Length = 1352
Score = 135 bits (340), Expect = 8e-32
Identities = 107/394 (27%), Positives = 162/394 (40%), Gaps = 83/394 (21%)
Query: 226 PRGR-DLSAVQCFCCKGFGHYASNCPRKSCNYCKKDGHVIKECPIRPPKKNATTFTTSVH 284
P+ R D S+V+C+ C FGHYAS C S ++ H ++E
Sbjct: 270 PKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFEEKAHYVEE------------------ 311
Query: 285 SPIAPSFVDIANVQHNAPTPVQALTPEIVEHMIILAFSALGISGKHSPNSSPWYFDYGAS 344
+Q E M+++A + WY D GAS
Sbjct: 312 -----------KIQE--------------EDMLLMA----SYKKDEQKENHKWYLDSGAS 342
Query: 345 NHMANNAEALTNITQNF-----------------GNLKIQVANGNHLPITAIGDISTSLN 387
NHM + ++ GN+ I++ NG+H ++
Sbjct: 343 NHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDH----------QFIS 392
Query: 388 DVYVSPGLTSNLIFVGQLVDNDCRVAFSKSGCLVQDQHSGKLIARGPKVGRLFPLCFSMS 447
+VY P + +N++ +GQL++ + + ++DQ S + R+F L
Sbjct: 393 NVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRND 452
Query: 448 PCSSLPFVSCHSATVVNFELWHKRLGHPNSNVLYELLQSGVLGNKETPSLSTIKFDCTYC 507
L C+ LWH R GH N L L + ++ + P ++ C C
Sbjct: 453 IAQCLKM--CYKE---ESWLWHLRFGHLNFGGLELLSRKEMV--RGLPCINHPNQVCEGC 505
Query: 508 KLGKSKILPFPNHQSNISQT-FDMIHSDLWGITPVISHANYKYFVTFIDDFSRFTWVYFL 566
LGK + FP S+ +Q ++IH+D+ G S YF+ FIDDFSR TWVYFL
Sbjct: 506 LLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFL 565
Query: 567 RSKDEVFSAFKFFHAYVETQFSSKIKILRSDNGG 600
+ K EVF FK F A+VE + IK +RSD GG
Sbjct: 566 KEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGG 599
>At4g19790 putative LTR retrotransposon (fragment)
Length = 281
Score = 134 bits (337), Expect = 2e-31
Identities = 91/269 (33%), Positives = 136/269 (49%), Gaps = 16/269 (5%)
Query: 343 ASNHMANNAEALTNITQNFGNLKIQVANGNHLPITAIGDI----STSLNDVYVSPGLTSN 398
A++H+ +N + + ++ N +++ N + I IG I + SL++V P N
Sbjct: 9 ATHHVTHNRDLYLDF-RSLENTFVRLPNDCRVKIAGIGFIQLSDAISLHNVLYIPEFKFN 67
Query: 399 LIFVGQLVDN-DCRVAFSKSGCLVQDQHSGKLIARGPKVGRLFPLCFSMS--------PC 449
LI V L +V+F+ VQ+ +I RG +VG L+ L F+ +
Sbjct: 68 LISVSVLTKFLKTKVSFTSDEFFVQELTKELMIGRGSEVGNLYVLDFNENNHIVSLKGTA 127
Query: 450 SSLPFVSCHSATVVNFELWHKRLGHPNSNVLYELLQSGVLGNKETPSLSTIKFDCTYCKL 509
S P S S+ VV+ WHKRLGHP + + L S VL K+ C C L
Sbjct: 128 SMCPEFSVCSSVVVDSVTWHKRLGHPAYSKID--LLSDVLNLKDKKINKEHSPVCHVCHL 185
Query: 510 GKSKILPFPNHQSNISQTFDMIHSDLWGITPVISHANYKYFVTFIDDFSRFTWVYFLRSK 569
K K L F Q+ S FD++H D WG V ++ +KYF+T +DDFSR TW+Y L++K
Sbjct: 186 SKQKHLSFQYRQNMCSAAFDLVHIDTWGPFSVPTNDGFKYFLTIVDDFSRATWIYLLKNK 245
Query: 570 DEVFSAFKFFHAYVETQFSSKIKILRSDN 598
+V F F V TQ+ +K+K +RSDN
Sbjct: 246 SDVLHVFPAFINMVHTQYQTKLKSVRSDN 274
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.331 0.141 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,424,106
Number of Sequences: 26719
Number of extensions: 705500
Number of successful extensions: 2543
Number of sequences better than 10.0: 133
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 2022
Number of HSP's gapped (non-prelim): 302
length of query: 733
length of database: 11,318,596
effective HSP length: 107
effective length of query: 626
effective length of database: 8,459,663
effective search space: 5295749038
effective search space used: 5295749038
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 64 (29.3 bits)
Lotus: description of TM0016.5