BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0014.22
(284 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g30920 F17F8.21 30 1.5
At2g36490 hypothetical protein 29 3.3
At4g10780 putative disease resistance protein 28 4.3
At1g05020 clathrin like protein 28 4.3
At4g02480 28 5.6
At3g60140 beta-glucosidase 28 5.6
At1g55350 putative n-calpain-1 large subunit (At1g55350) 28 5.6
At1g08060 storage protein, putative 28 5.6
At5g08630 unknown protein 28 7.3
At4g01860 unknown protein 28 7.3
At5g36300 putative protein 27 9.6
At1g70985 unknown protein 27 9.6
>At1g30920 F17F8.21
Length = 1201
Score = 30.0 bits (66), Expect = 1.5
Identities = 17/61 (27%), Positives = 27/61 (43%), Gaps = 6/61 (9%)
Query: 162 DETNKALYTTYKPGKSDYKVVDLHPKLRIWHKILLHCINQRPKGSSPDYINFCQKAMLFF 221
D+ K L+ Y G D+K++ L + W KI HC P P C +L++
Sbjct: 142 DKQFKVLFMAYPSGPDDHKILTLGTRRMRWRKI--HC----PLTHDPFCEGICINGVLYY 195
Query: 222 I 222
+
Sbjct: 196 L 196
>At2g36490 hypothetical protein
Length = 1207
Score = 28.9 bits (63), Expect = 3.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 66 WRFNLDNIAANGYDLRPEVQVQGWEEYFNRLRG 98
W+ L+NI + G D E + + WEE N RG
Sbjct: 511 WKLLLENINSEGVDGSDEQKAKWWEEERNVFRG 543
>At4g10780 putative disease resistance protein
Length = 892
Score = 28.5 bits (62), Expect = 4.3
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 85 QVQGWEEYFNRLRGPIYDKL------VKEFWKHADCDDTQVVSYIAGRRIIIIEKSIVNL 138
QVQ W + +R YD L ++ +++C SY G+R+ ++ K + NL
Sbjct: 70 QVQVWLKRVEIIRNQFYDLLSARNIEIQRLCFYSNCSTNLSSSYTYGQRVFLMIKEVENL 129
>At1g05020 clathrin like protein
Length = 653
Score = 28.5 bits (62), Expect = 4.3
Identities = 15/42 (35%), Positives = 21/42 (49%)
Query: 166 KALYTTYKPGKSDYKVVDLHPKLRIWHKILLHCINQRPKGSS 207
KA +++P D K V L K+ W K+L I RP G +
Sbjct: 189 KAGIKSHEPAVRDMKPVMLLDKITYWQKLLDRAIATRPTGDA 230
>At4g02480
Length = 731
Score = 28.1 bits (61), Expect = 5.6
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 72 NIAANGYDLRPEVQVQGWEEYFNRLRGPIYDKL-----VKEFWKHADCDDT 117
N+ A GY++RP V + G F+ +RG I L VKEF + D T
Sbjct: 386 NVPAAGYEIRPIVHLLGESSSFD-IRGSISRLLDERREVKEFLREFDLSST 435
>At3g60140 beta-glucosidase
Length = 577
Score = 28.1 bits (61), Expect = 5.6
Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 9/103 (8%)
Query: 133 KSIVNLLGAHTGTGYRFQLTESKVKP--RTKDETNKALYTTYKPGKSDYKVVDLHPKLRI 190
K + L+ +RF ++ S++ P + KD NK YK + D+ P + +
Sbjct: 87 KDDIKLMKELNMDAFRFSISWSRLIPSGKLKDGVNKEGVQFYKDLIDELLANDIQPSMTL 146
Query: 191 WHKILLHCINQRPKGSSPDYINFCQKAMLFFIQDKRKICLPFF 233
+H P+ +Y F ++ +D +IC F
Sbjct: 147 YHW-------DHPQSLEDEYGGFLSPKIVEDFRDFARICFEEF 182
>At1g55350 putative n-calpain-1 large subunit (At1g55350)
Length = 2144
Score = 28.1 bits (61), Expect = 5.6
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 36 QASEKMIPIAERGCAVHCVYAPEELQVLAEWRFNLDNIAANGYDLRP 82
Q +++ P +R V P +LQV++EW + NG D RP
Sbjct: 1688 QFTDQEFPPNDRSLFVDTQNPPSKLQVVSEWMRPDSIVKENGSDSRP 1734
>At1g08060 storage protein, putative
Length = 1892
Score = 28.1 bits (61), Expect = 5.6
Identities = 17/38 (44%), Positives = 20/38 (51%), Gaps = 1/38 (2%)
Query: 142 HTGTGYRFQLTESKVKPRTKDETNKALYTTYKPGKSDY 179
HT G RF L E V ++KD N + YK GK DY
Sbjct: 120 HTLNGKRFVLEEHMVH-QSKDGRNAVVAFFYKLGKPDY 156
>At5g08630 unknown protein
Length = 723
Score = 27.7 bits (60), Expect = 7.3
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 131 IEKSIVNLLGAHTGTGYRFQLTESKVKPRTKDETNKA 167
IEKS L+G ++ Q+T++K++P+ ++E KA
Sbjct: 519 IEKSEKRLIGNVYLRKHKRQMTDTKIEPKEEEEDEKA 555
>At4g01860 unknown protein
Length = 1308
Score = 27.7 bits (60), Expect = 7.3
Identities = 33/155 (21%), Positives = 59/155 (37%), Gaps = 30/155 (19%)
Query: 108 FWKHADCDDTQVVSYIAGRRIIIIEKSIVNLLGAHTGTGY----RFQLTESKVKPRTKDE 163
FW C V +++ I IEK I L TG G +++L SK+ R ++
Sbjct: 1048 FWDVTKC----VEAFVKQVSSIHIEKYIDCQLRPRTGRGSQGGRKWKLLGSKISKRAQEN 1103
Query: 164 TNKALYTTYKPGKSDYKVVDLHPK----------------------LRIWHKILLHCINQ 201
+N + S ++ + HP+ ++ H+ ++C++
Sbjct: 1104 SNSVGEAAEEDPASSLELTNDHPQENGKNEDADSLPETSEIKTSHVVKNAHQSGVNCLHV 1163
Query: 202 RPKGSSPDYINFCQKAMLFFIQDKRKICLPFFLFS 236
SSP Y N ++ D+ CL F + S
Sbjct: 1164 SRSNSSPSYGNGLMFNVISGGDDQALHCLSFNILS 1198
>At5g36300 putative protein
Length = 326
Score = 27.3 bits (59), Expect = 9.6
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 188 LRIWHKI---LLHCINQRPKGSSPDYINFCQKAMLFFIQDKRKICLPFFLFSYLKECIRK 244
L I+H I +L+C++ +G PD + + F K ++ F+L + + E R+
Sbjct: 264 LSIYHHIKETMLNCLSLSSEGIHPDVVTYSTLMKAFTRAKKYEMVCSFYLVTLVPEIFRE 323
>At1g70985 unknown protein
Length = 135
Score = 27.3 bits (59), Expect = 9.6
Identities = 14/42 (33%), Positives = 24/42 (56%)
Query: 230 LPFFLFSYLKECIRKSITTASIKSAIKYIPFGRLLSDLFIES 271
LP+F F Y K + +++S+KS +K + LL+ L + S
Sbjct: 93 LPYFPFYYRKPPHQTDQSSSSMKSTVKIVTVANLLAVLMLFS 134
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.322 0.139 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,424,364
Number of Sequences: 26719
Number of extensions: 273377
Number of successful extensions: 536
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 530
Number of HSP's gapped (non-prelim): 12
length of query: 284
length of database: 11,318,596
effective HSP length: 98
effective length of query: 186
effective length of database: 8,700,134
effective search space: 1618224924
effective search space used: 1618224924
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0014.22