BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0013.3
(324 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g17450 retrotransposon like protein 355 2e-98
At1g57640 352 2e-97
At4g22040 LTR retrotransposon like protein 351 3e-97
At2g23330 putative retroelement pol polyprotein 350 6e-97
At4g23160 putative protein 348 2e-96
At2g16670 putative retroelement pol polyprotein 343 7e-95
At2g16000 putative retroelement pol polyprotein 340 8e-94
At2g24660 putative retroelement pol polyprotein 338 2e-93
At1g47650 hypothetical protein 338 2e-93
At2g13940 putative retroelement pol polyprotein 334 3e-92
At2g20460 putative retroelement pol polyprotein 328 2e-90
At4g07810 putative polyprotein 327 7e-90
At4g10990 putative retrotransposon polyprotein 326 9e-90
At1g70010 hypothetical protein 322 2e-88
At2g06840 putative retroelement pol polyprotein 301 4e-82
At1g44510 polyprotein, putative 297 5e-81
At1g59265 polyprotein, putative 296 8e-81
At1g58889 polyprotein, putative 295 2e-80
At1g47520 hypothetical protein 290 7e-79
At4g16870 retrotransposon like protein 289 1e-78
>At4g17450 retrotransposon like protein
Length = 1433
Score = 355 bits (910), Expect = 2e-98
Identities = 175/329 (53%), Positives = 231/329 (70%), Gaps = 5/329 (1%)
Query: 1 KAEIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLD 60
K EI A+ + TW +V LP KAIG KWV+ IK NADG++ RYKARLVAKGY Q EGLD
Sbjct: 934 KEEIGAMVRTNTWSVVSLPPNKKAIGCKWVFTIKHNADGSIERYKARLVAKGYTQEEGLD 993
Query: 61 YFDTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGV-----P 115
Y +TFSPVAKLT+VRM+L LAA W +HQLD+ NAFL+G LDE++YM IP G
Sbjct: 994 YEETFSPVAKLTSVRMMLLLAAKMKWSVHQLDISNAFLNGDLDEEIYMKIPPGYADLVGE 1053
Query: 116 TMKPNQVCKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLV 175
+ P+ +C+L KS+YGLKQASR+WY KLS+ L+ +G+ ++ +DH+LF+K+ + + G+LV
Sbjct: 1054 ALPPHAICRLHKSIYGLKQASRQWYLKLSNTLKGMGFQKSNADHTLFIKYANGVLMGVLV 1113
Query: 176 YVDDVILFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDL 235
YVDD+++ N L + F ++DL KYFLG+E+A S GIS+CQRKY L+L
Sbjct: 1114 YVDDIMIVSNSDDAVAQFTAELKSYFKLRDLGAAKYFLGIEIARSEKGISICQRKYILEL 1173
Query: 236 LTETGTLGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQL 295
L+ TG LGSKP S PLDPS KL G P +D+T+YR+LVG+L+YL TRPDI++A L
Sbjct: 1174 LSTTGFLGSKPSSIPLDPSVKLNKEDGVPLTDSTSYRKLVGKLMYLQITRPDIAYAVNTL 1233
Query: 296 SQFMSNPMTDHYKAALRVLRFLKTSPGLG 324
QF P + H A +VLR+LK + G G
Sbjct: 1234 CQFSHAPTSVHLSAVHKVLRYLKGTVGQG 1262
>At1g57640
Length = 1444
Score = 352 bits (902), Expect = 2e-97
Identities = 170/323 (52%), Positives = 237/323 (72%)
Query: 2 AEIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDY 61
AEI +L N+T+ IV+LP G +A+GNKWVY+IK +DG + RYKARLV G Q EG+DY
Sbjct: 953 AEIESLRVNQTFSIVNLPPGKRALGNKWVYKIKYRSDGAIERYKARLVVLGNCQKEGVDY 1012
Query: 62 FDTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGVPTMKPNQ 121
+TF+PVAK++TVR+ L +AAA++WH+HQ+DV NAFLHG L E+VYM +P G P++
Sbjct: 1013 DETFAPVAKMSTVRLFLGVAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSK 1072
Query: 122 VCKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVYVDDVI 181
VC+L KSLYGLKQA R W+ KLSS L+ G++Q+ SD+SLF D +F +LVYVDD+I
Sbjct: 1073 VCRLHKSLYGLKQAPRCWFSKLSSALKQYGFTQSLSDYSLFSYNNDGIFVHVLVYVDDLI 1132
Query: 182 LFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLLTETGT 241
+ G+C K L + F +KDL +LKYFLG+EV+ ++ G L QRKY LD+++E G
Sbjct: 1133 ISGSCPDAVAQFKSYLESCFHMKDLGLLKYFLGIEVSRNAQGFYLSQRKYVLDIISEMGL 1192
Query: 242 LGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLSQFMSN 301
LG++P + PL+ + KL ++ SD++ YRRLVGRL+YL TRP++S++ L+QFM N
Sbjct: 1193 LGARPSAFPLEQNHKLSLSTSPLLSDSSRYRRLVGRLIYLVVTRPELSYSVHTLAQFMQN 1252
Query: 302 PMTDHYKAALRVLRFLKTSPGLG 324
P DH+ AA+RV+R+LK++PG G
Sbjct: 1253 PRQDHWNAAIRVVRYLKSNPGQG 1275
>At4g22040 LTR retrotransposon like protein
Length = 1109
Score = 351 bits (901), Expect = 3e-97
Identities = 170/323 (52%), Positives = 237/323 (72%)
Query: 2 AEIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDY 61
AEI +L N+T+ IV+LP G +A+GNKWVY+IK +DG + RYKARLV G Q EG+DY
Sbjct: 618 AEIESLRVNQTFSIVNLPPGKRALGNKWVYKIKYRSDGAIERYKARLVVLGNCQKEGVDY 677
Query: 62 FDTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGVPTMKPNQ 121
+TF+PVAK++TVR+ L +AAA++WH+HQ+DV NAFLHG L E+VYM +P G P++
Sbjct: 678 DETFAPVAKMSTVRLFLGVAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSK 737
Query: 122 VCKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVYVDDVI 181
VC+L KSLYGLKQA R W+ KLSS L+ G++Q+ SD+SLF D +F +LVYVDD+I
Sbjct: 738 VCRLHKSLYGLKQAPRCWFSKLSSALKQYGFTQSLSDYSLFSYNNDGVFVHVLVYVDDLI 797
Query: 182 LFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLLTETGT 241
+ G+C K L + F +KDL +LKYFLG+EV+ ++ G L QRKY LD+++E G
Sbjct: 798 ISGSCPDAVAQFKSYLESCFHMKDLGLLKYFLGIEVSRNAQGFYLSQRKYVLDIISEMGL 857
Query: 242 LGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLSQFMSN 301
LG++P + PL+ + KL ++ SD++ YRRLVGRL+YL TRP++S++ L+QFM N
Sbjct: 858 LGARPSAFPLEQNHKLSLSTSPLLSDSSRYRRLVGRLIYLAVTRPELSYSVHTLAQFMQN 917
Query: 302 PMTDHYKAALRVLRFLKTSPGLG 324
P DH+ AA+RV+R+LK++PG G
Sbjct: 918 PRQDHWNAAIRVVRYLKSNPGQG 940
>At2g23330 putative retroelement pol polyprotein
Length = 1496
Score = 350 bits (898), Expect = 6e-97
Identities = 179/323 (55%), Positives = 233/323 (71%), Gaps = 2/323 (0%)
Query: 3 EIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDYF 62
EI ALE N TW I DLP G KAI +KWVY++K N+DGTL R+KARLV G +Q EG+D+
Sbjct: 1006 EIDALEANHTWDITDLPHGKKAISSKWVYKLKYNSDGTLERHKARLVVMGNHQKEGVDFK 1065
Query: 63 DTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGVPTMKPNQV 122
+TF+PVAKLTTVR +LA+AAA++W +HQ+DV NAFLHG L+E+VYM +P G P++V
Sbjct: 1066 ETFAPVAKLTTVRTILAVAAAKDWEVHQMDVHNAFLHGDLEEEVYMRLPPGFKCSDPSKV 1125
Query: 123 CKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLF-VKFQDTLFAGLLVYVDDVI 181
C+L+KSLYGLKQA R W+ KLS+ LRN+G++Q+ D+SLF +K DT+ +LVYVDD+I
Sbjct: 1126 CRLRKSLYGLKQAPRCWFSKLSTALRNIGFTQSYEDYSLFSLKNGDTII-HVLVYVDDLI 1184
Query: 182 LFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLLTETGT 241
+ GN L K LH F +KDL LKYFLGLEV+ G L QRKY LD++ ETG
Sbjct: 1185 VAGNNLDAIDRFKSQLHKCFHMKDLGKLKYFLGLEVSRGPDGFCLSQRKYALDIVKETGL 1244
Query: 242 LGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLSQFMSN 301
LG KP + P+ + KL G +++ YRRLVGR +YLT TRPD+S+A LSQFM
Sbjct: 1245 LGCKPSAVPIALNHKLASITGPVFTNPEQYRRLVGRFIYLTITRPDLSYAVHILSQFMQA 1304
Query: 302 PMTDHYKAALRVLRFLKTSPGLG 324
P+ H++AALR++R+LK SP G
Sbjct: 1305 PLVAHWEAALRLVRYLKGSPAQG 1327
>At4g23160 putative protein
Length = 1240
Score = 348 bits (894), Expect = 2e-96
Identities = 174/327 (53%), Positives = 228/327 (69%), Gaps = 5/327 (1%)
Query: 3 EIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDYF 62
EI A+E TW+I LP K IG KWVY+IK N+DGT+ RYKARLVAKGY Q EG+D+
Sbjct: 105 EIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFI 164
Query: 63 DTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGVP-----TM 117
+TFSPV KLT+V+++LA++A N+ LHQLD+ NAFL+G LDE++YM +P G ++
Sbjct: 165 ETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSL 224
Query: 118 KPNQVCKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVYV 177
PN VC L+KS+YGLKQASR+W+ K S L G+ Q+ SDH+ F+K TLF +LVYV
Sbjct: 225 PPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYV 284
Query: 178 DDVILFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLLT 237
DD+I+ N A +K L + F ++DL LKYFLGLE+A S+ GI++CQRKY LDLL
Sbjct: 285 DDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLD 344
Query: 238 ETGTLGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLSQ 297
ETG LG KP S P+DPS + G + DA AYRRL+GRL+YL TR DISFA +LSQ
Sbjct: 345 ETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQ 404
Query: 298 FMSNPMTDHYKAALRVLRFLKTSPGLG 324
F P H +A +++L ++K + G G
Sbjct: 405 FSEAPRLAHQQAVMKILHYIKGTVGQG 431
>At2g16670 putative retroelement pol polyprotein
Length = 1333
Score = 343 bits (880), Expect = 7e-95
Identities = 167/321 (52%), Positives = 229/321 (71%)
Query: 4 IAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDYFD 63
I A E+N TW I DLP G +AIG++WVY++K N+DG++ RYKARLVA G Q EG DY +
Sbjct: 844 IDAQEENHTWTIEDLPPGKRAIGSQWVYKVKHNSDGSVERYKARLVALGNKQKEGEDYGE 903
Query: 64 TFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGVPTMKPNQVC 123
TF+PVAK+ TVR+ L +A +NW +HQ+DV NAFLHG L E+VYM +P G PN+VC
Sbjct: 904 TFAPVAKMATVRLFLDVAVKRNWEIHQMDVHNAFLHGDLREEVYMKLPPGFEASHPNKVC 963
Query: 124 KLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVYVDDVILF 183
+L+K+LYGLKQA R W+EKL++ L+ G+ Q+ +D+SLF + ++ +L+YVDD+I+
Sbjct: 964 RLRKALYGLKQAPRCWFEKLTTALKRYGFQQSLADYSLFTLVKGSVRIKILIYVDDLIIT 1023
Query: 184 GNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLLTETGTLG 243
GN Q K+ L + F +KDL LKYFLG+EVA S+ GI +CQRKY LD+++ETG LG
Sbjct: 1024 GNSQRATQQFKEYLASCFHMKDLGPLKYFLGIEVARSTTGIYICQRKYALDIISETGLLG 1083
Query: 244 SKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLSQFMSNPM 303
KP + PL+ + KL ++ +D YRRLVGRL+YL TR D++F+ L++FM P
Sbjct: 1084 VKPANFPLEQNHKLGLSTSPLLTDPQRYRRLVGRLIYLAVTRLDLAFSVHILARFMQEPR 1143
Query: 304 TDHYKAALRVLRFLKTSPGLG 324
DH+ AALRV+R+LK PG G
Sbjct: 1144 EDHWAAALRVVRYLKADPGQG 1164
>At2g16000 putative retroelement pol polyprotein
Length = 1454
Score = 340 bits (871), Expect = 8e-94
Identities = 171/328 (52%), Positives = 229/328 (69%), Gaps = 5/328 (1%)
Query: 2 AEIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDY 61
AEI A+EK TW+I LP+G KA+G KWV+ +K ADG L RYKARLVAKGY Q EGLDY
Sbjct: 958 AEIGAMEKTNTWEITTLPKGKKAVGCKWVFTLKFLADGNLERYKARLVAKGYTQKEGLDY 1017
Query: 62 FDTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGVPTMK--- 118
DTFSPVAK+TT++++L ++A++ W L QLDV NAFL+G L+E+++M IP G K
Sbjct: 1018 TDTFSPVAKMTTIKLLLKVSASKKWFLKQLDVSNAFLNGELEEEIFMKIPEGYAERKGIV 1077
Query: 119 --PNQVCKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVY 176
N V +L++S+YGLKQASR+W++K SS L +LG+ + DH+LF+K D F +LVY
Sbjct: 1078 LPSNVVLRLKRSIYGLKQASRQWFKKFSSSLLSLGFKKTHGDHTLFLKMYDGEFVIVLVY 1137
Query: 177 VDDVILFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLL 236
VDD+++ A + + L F ++DL LKYFLGLEVA ++ GIS+CQRKY L+LL
Sbjct: 1138 VDDIVIASTSEAAAAQLTEELDQRFKLRDLGDLKYFLGLEVARTTAGISICQRKYALELL 1197
Query: 237 TETGTLGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLS 296
TG L KPVS P+ P+ K+ + G+ D YRR+VG+L+YLT TRPDI+FA +L
Sbjct: 1198 QSTGMLACKPVSVPMIPNLKMRKDDGDLIEDIEQYRRIVGKLMYLTITRPDITFAVNKLC 1257
Query: 297 QFMSNPMTDHYKAALRVLRFLKTSPGLG 324
QF S P T H AA RVL+++K + G G
Sbjct: 1258 QFSSAPRTTHLTAAYRVLQYIKGTVGQG 1285
>At2g24660 putative retroelement pol polyprotein
Length = 1156
Score = 338 bits (867), Expect = 2e-93
Identities = 170/322 (52%), Positives = 224/322 (68%)
Query: 3 EIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDYF 62
E+ ALE N+TW IVDLP G AIG++WVY+ K NADG++ RYKARLV +G Q+EG DY
Sbjct: 658 EVDALEINKTWDIVDLPPGKVAIGSQWVYKTKYNADGSIERYKARLVVQGNKQVEGEDYN 717
Query: 63 DTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGVPTMKPNQV 122
+TF+PV K+TTVR +L L AA W ++Q+DV+NAFLHG LDE+VYM +P G P++V
Sbjct: 718 ETFAPVVKMTTVRTLLRLVAANQWEVYQMDVNNAFLHGDLDEEVYMKLPPGFRHSHPDKV 777
Query: 123 CKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVYVDDVIL 182
C+L+KSLYGLKQA R W++KLS L G+ Q D+S F ++ + +LVYVDD+++
Sbjct: 778 CRLRKSLYGLKQAPRCWFKKLSDALLRFGFVQGHEDYSFFSYTRNGIELRVLVYVDDLLI 837
Query: 183 FGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLLTETGTL 242
GN Q K+ L F +KDL LKYFLG+EV+ S GI L QRKY LD++T++G L
Sbjct: 838 CGNDGYMLQKFKEYLGRCFSMKDLGKLKYFLGIEVSRGSEGIFLSQRKYALDIITDSGNL 897
Query: 243 GSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLSQFMSNP 302
G +P TPL+ + L + G +DA YRRLVGRLLYL TRP++S++ LSQFM P
Sbjct: 898 GCRPALTPLEQNHHLATDDGPLLADAKPYRRLVGRLLYLLHTRPELSYSVHVLSQFMQTP 957
Query: 303 MTDHYKAALRVLRFLKTSPGLG 324
H AA+R++RFLK SPG G
Sbjct: 958 REAHLAAAMRIVRFLKGSPGQG 979
>At1g47650 hypothetical protein
Length = 1409
Score = 338 bits (867), Expect = 2e-93
Identities = 167/328 (50%), Positives = 227/328 (68%), Gaps = 5/328 (1%)
Query: 2 AEIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDY 61
+EI A+E TW+I LP G KA+G KWV+ +K ADG+L RYKARLVAKGY Q EGLDY
Sbjct: 749 SEIGAMETTHTWEITTLPAGKKAVGCKWVFSLKFLADGSLERYKARLVAKGYTQKEGLDY 808
Query: 62 FDTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGVP-----T 116
DTFSPVAK+TT++++L ++A++ W L QLDV NAFL+G L+E++YM +P G T
Sbjct: 809 TDTFSPVAKMTTIKLLLKISASKKWFLKQLDVSNAFLNGELEEEIYMKLPEGYAARKGIT 868
Query: 117 MKPNQVCKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVY 176
+ PN VC+L++S+YGLKQASR+W++K S+ L +LG+ + DH+LF+K D F +LVY
Sbjct: 869 LPPNSVCRLKRSIYGLKQASRQWFKKFSASLLDLGFKKTHGDHTLFIKEYDGEFVIVLVY 928
Query: 177 VDDVILFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLL 236
VDD+ + + L F ++DL LKYFLGLE+A + GIS+CQRKY L+LL
Sbjct: 929 VDDIAIASTSEGAAIQLTQDLQQRFKLRDLGDLKYFLGLEIARTEAGISICQRKYALELL 988
Query: 237 TETGTLGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLS 296
TG + KPVS P+ P+ K++ G+ D YRR+VG+L+YLT TR DI+FA +L
Sbjct: 989 ASTGMVNCKPVSVPMIPNVKMMKTDGDLLDDREQYRRIVGKLMYLTITRLDITFAVNKLC 1048
Query: 297 QFMSNPMTDHYKAALRVLRFLKTSPGLG 324
QF S P T H +AA RVL+++K S G G
Sbjct: 1049 QFSSAPRTSHLQAAYRVLQYIKGSVGQG 1076
>At2g13940 putative retroelement pol polyprotein
Length = 1501
Score = 334 bits (857), Expect = 3e-92
Identities = 167/322 (51%), Positives = 224/322 (68%)
Query: 3 EIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDYF 62
E+ ALE N+TW IVDLP G AIG++WV++ K N+DGT+ RYKARLV +G Q+EG DY
Sbjct: 1011 EVDALEINKTWDIVDLPPGKVAIGSQWVFKTKYNSDGTVERYKARLVVQGNKQVEGEDYK 1070
Query: 63 DTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGVPTMKPNQV 122
+TF+PV ++TTVR +L AA W ++Q+DV NAFLHG L+E+VYM +P G P++V
Sbjct: 1071 ETFAPVVRMTTVRTLLRNVAANQWEVYQMDVHNAFLHGDLEEEVYMKLPPGFRHSHPDKV 1130
Query: 123 CKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVYVDDVIL 182
C+L+KSLYGLKQA R W++KLS L G+ Q+ D+SLF ++ + +L+YVDD+++
Sbjct: 1131 CRLRKSLYGLKQAPRCWFKKLSDSLLRFGFVQSYEDYSLFSYTRNNIELRVLIYVDDLLI 1190
Query: 183 FGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLLTETGTL 242
GN Q KD L F +KDL LKYFLG+EV+ GI L QRKY LD++ ++G L
Sbjct: 1191 CGNDGYMLQKFKDYLSRCFSMKDLGKLKYFLGIEVSRGPEGIFLSQRKYALDVIADSGNL 1250
Query: 243 GSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLSQFMSNP 302
GS+P TPL+ + L + G SD YRRLVGRLLYL TRP++S++ L+QFM NP
Sbjct: 1251 GSRPAHTPLEQNHHLASDDGPLLSDPKPYRRLVGRLLYLLHTRPELSYSVHVLAQFMQNP 1310
Query: 303 MTDHYKAALRVLRFLKTSPGLG 324
H+ AALRV+R+LK SPG G
Sbjct: 1311 REAHFDAALRVVRYLKGSPGQG 1332
>At2g20460 putative retroelement pol polyprotein
Length = 1461
Score = 328 bits (842), Expect = 2e-90
Identities = 165/327 (50%), Positives = 228/327 (69%), Gaps = 5/327 (1%)
Query: 3 EIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDYF 62
EI A+E+ +TW+I LP G KA+G KWV+ +K +ADG+L R+KAR+VAKGY Q EGLDY
Sbjct: 966 EIGAMERTDTWEITSLPPGKKAVGCKWVFTVKFHADGSLERFKARIVAKGYTQKEGLDYT 1025
Query: 63 DTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGVPTMK---- 118
+TFSPVAK+ TV+++L ++A++ W+L+QLD+ NAFL+G L+E +YM +P G +K
Sbjct: 1026 ETFSPVAKMATVKLLLKVSASKKWYLNQLDISNAFLNGDLEETIYMKLPDGYADIKGTSL 1085
Query: 119 -PNQVCKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVYV 177
PN VC+L+KS+YGLKQASR+W+ K S+ L LG+ + DH+LFV+ + F LLVYV
Sbjct: 1086 PPNVVCRLKKSIYGLKQASRQWFLKFSNSLLALGFEKQHGDHTLFVRCIGSEFIVLLVYV 1145
Query: 178 DDVILFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLLT 237
DD+++ Q + ++L +F +++L LKYFLGLEVA +S GISL QRKY L+LLT
Sbjct: 1146 DDIVIASTTEQAAQSLTEALKASFKLRELGPLKYFLGLEVARTSEGISLSQRKYALELLT 1205
Query: 238 ETGTLGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLSQ 297
L KP S P+ P+ +L N G D YRRLVG+L+YLT TRPDI+FA +L Q
Sbjct: 1206 SADMLDCKPSSIPMTPNIRLSKNDGLLLEDKEMYRRLVGKLMYLTITRPDITFAVNKLCQ 1265
Query: 298 FMSNPMTDHYKAALRVLRFLKTSPGLG 324
F S P T H A +VL+++K + G G
Sbjct: 1266 FSSAPRTAHLAAVYKVLQYIKGTVGQG 1292
>At4g07810 putative polyprotein
Length = 1366
Score = 327 bits (837), Expect = 7e-90
Identities = 171/327 (52%), Positives = 218/327 (66%), Gaps = 5/327 (1%)
Query: 3 EIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDYF 62
E+ AL T +I L G +AIG KWV++IK +DGT+ RYKARLVA GY Q EG+DY
Sbjct: 908 ELDALVSTSTREICSLHDGKRAIGCKWVFKIKYKSDGTIERYKARLVANGYTQQEGVDYI 967
Query: 63 DTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGVPTMK---- 118
DTFSP+AKLT+VR++LALAA NW + Q+DV NAFLHG +E++YM +P G K
Sbjct: 968 DTFSPIAKLTSVRLILALAAIHNWSISQMDVTNAFLHGDFEEEIYMQLPQGYTPRKGELL 1027
Query: 119 -PNQVCKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVYV 177
VC+L KSLYGLKQASR+W+ K S L G+ Q+ D +LFV+ ++ F LLVYV
Sbjct: 1028 PKRPVCRLVKSLYGLKQASRQWFHKFSGVLIQNGFMQSLFDPTLFVRVREDTFLALLVYV 1087
Query: 178 DDVILFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLLT 237
DD++L N + VK L F +KDL +YFLGLE+A S GIS+ QRKY L+LL
Sbjct: 1088 DDIMLVSNKDSAVIEVKQILAKEFKLKDLGQKRYFLGLEIARSKEGISISQRKYALELLE 1147
Query: 238 ETGTLGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLSQ 297
E G LG KPV TP++ + KL G DA+ YR+L+GRL+YLT TRPDI FA +L+Q
Sbjct: 1148 EFGFLGCKPVPTPMELNLKLSQEDGALLLDASHYRKLIGRLVYLTVTRPDICFAVNKLNQ 1207
Query: 298 FMSNPMTDHYKAALRVLRFLKTSPGLG 324
+MS P H AA R+LR+LK PG G
Sbjct: 1208 YMSAPREPHLMAARRILRYLKNDPGQG 1234
>At4g10990 putative retrotransposon polyprotein
Length = 1203
Score = 326 bits (836), Expect = 9e-90
Identities = 168/327 (51%), Positives = 226/327 (68%), Gaps = 5/327 (1%)
Query: 3 EIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDYF 62
E+ ALE+N+TW + L +G +G KWV+ IK N DG++ RYKARLVA+G+ Q EG+DY
Sbjct: 544 ELHALEQNKTWIVESLTEGKNVVGCKWVFTIKYNPDGSIERYKARLVAQGFTQQEGIDYM 603
Query: 63 DTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGV--PT---M 117
+TFSPVAK +V+++L LAAA W L Q+DV NAFLHG LDE++YM++P G PT +
Sbjct: 604 ETFSPVAKFGSVKLLLGLAAATGWSLTQMDVSNAFLHGELDEEIYMSLPQGYTPPTGISL 663
Query: 118 KPNQVCKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVYV 177
VC+L KSLYGLKQASR+WY++LSS + Q+ +D+++FVK T +LVYV
Sbjct: 664 PSKPVCRLLKSLYGLKQASRQWYKRLSSVFLGANFIQSPADNTMFVKVSCTSIIVVLVYV 723
Query: 178 DDVILFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLLT 237
DD+++ N + + +K+ L + F IKDL ++FLGLE+A SS GIS+CQRKY +LL
Sbjct: 724 DDLMIASNDSSAVENLKELLRSEFKIKDLGPARFFLGLEIARSSEGISVCQRKYAQNLLE 783
Query: 238 ETGTLGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLSQ 297
+ G G KP S P+DP+ L G +AT+YR LVGRLLYL TRPDI+FA LSQ
Sbjct: 784 DVGLSGCKPSSIPMDPNLHLTKEMGTLLPNATSYRELVGRLLYLCITRPDITFAVHTLSQ 843
Query: 298 FMSNPMTDHYKAALRVLRFLKTSPGLG 324
F+S P H +AA +VLR+LK +PG G
Sbjct: 844 FLSAPTDIHMQAAHKVLRYLKGNPGQG 870
>At1g70010 hypothetical protein
Length = 1315
Score = 322 bits (825), Expect = 2e-88
Identities = 160/328 (48%), Positives = 221/328 (66%), Gaps = 5/328 (1%)
Query: 2 AEIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDY 61
AE LE TW++ LP + IG +W+++IK N+DG++ RYKARLVA+GY Q EG+DY
Sbjct: 819 AEFDFLEGTHTWEVCSLPADKRCIGCRWIFKIKYNSDGSVERYKARLVAQGYTQKEGIDY 878
Query: 62 FDTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGVPT----- 116
+TFSPVAKL +V+++L +AA L QLD+ NAFL+G LDE++YM +P G +
Sbjct: 879 NETFSPVAKLNSVKLLLGVAARFKLSLTQLDISNAFLNGDLDEEIYMRLPQGYASRQGDS 938
Query: 117 MKPNQVCKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVY 176
+ PN VC+L+KSLYGLKQASR+WY K SS L LG+ Q+ DH+ F+K D +F +LVY
Sbjct: 939 LPPNAVCRLKKSLYGLKQASRQWYLKFSSTLLGLGFIQSYCDHTCFLKISDGIFLCVLVY 998
Query: 177 VDDVILFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLL 236
+DD+I+ N A ++K + + F ++DL LKYFLGLE+ S GI + QRKY LDLL
Sbjct: 999 IDDIIIASNNDAAVDILKSQMKSFFKLRDLGELKYFLGLEIVRSDKGIHISQRKYALDLL 1058
Query: 237 TETGTLGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLS 296
ETG LG KP S P+DPS + G + + YRRL+GRL+YL TRPDI+FA +L+
Sbjct: 1059 DETGQLGCKPSSIPMDPSMVFAHDSGGDFVEVGPYRRLIGRLMYLNITRPDITFAVNKLA 1118
Query: 297 QFMSNPMTDHYKAALRVLRFLKTSPGLG 324
QF P H +A ++L+++K + G G
Sbjct: 1119 QFSMAPRKAHLQAVYKILQYIKGTIGQG 1146
>At2g06840 putative retroelement pol polyprotein
Length = 1102
Score = 301 bits (770), Expect = 4e-82
Identities = 159/322 (49%), Positives = 208/322 (64%), Gaps = 22/322 (6%)
Query: 3 EIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDYF 62
EI ALE N TW + DLP G KAI +KWVY++K N+DGTL R+KARLV G +Q EG+D+
Sbjct: 638 EIEALEANHTWDVTDLPHGKKAISSKWVYKLKFNSDGTLERHKARLVVMGNHQKEGIDFK 697
Query: 63 DTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGVPTMKPNQV 122
+TF+PVAK+TTVR++LA+AAA++W + Q+DV NAFLHG L+
Sbjct: 698 ETFAPVAKMTTVRLLLAVAAAKDWDVFQMDVHNAFLHGDLE------------------- 738
Query: 123 CKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVYVDDVIL 182
Q+SLYGLKQA R W+ KLS+ LR LG++Q+ D+SLF +D LVYVDD I+
Sbjct: 739 ---QESLYGLKQAPRCWFAKLSTALRKLGFTQSYEDYSLFSLNRDGTVIHFLVYVDDFII 795
Query: 183 FGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLLTETGTL 242
GN L K+ LH F +KDL LKYFLGLEV+ + G L Q+KY LD++ E G L
Sbjct: 796 VGNNLKAIDHFKEHLHKCFHMKDLGKLKYFLGLEVSRGADGFCLSQQKYALDIINEAGLL 855
Query: 243 GSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLSQFMSNP 302
G KP + P++ KL + + YRRLV R +YLT TRPD+S+A LSQFM P
Sbjct: 856 GYKPSAVPMELHHKLGSISSPVFDNPAQYRRLVDRFIYLTITRPDLSYAVHILSQFMQTP 915
Query: 303 MTDHYKAALRVLRFLKTSPGLG 324
+ H+ A LR++R+LK SP G
Sbjct: 916 LEAHWHATLRLVRYLKGSPDQG 937
>At1g44510 polyprotein, putative
Length = 1459
Score = 297 bits (761), Expect = 5e-81
Identities = 155/316 (49%), Positives = 208/316 (65%), Gaps = 1/316 (0%)
Query: 3 EIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDYF 62
E A ++N TW +V +G +WV+++K +G + +YKARLVAKG+NQ G+DY
Sbjct: 969 EFDAQQRNHTWDLVPPNPTQHLVGCRWVFKLKYLPNGLIDKYKARLVAKGFNQQYGVDYA 1028
Query: 63 DTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAG-VPTMKPNQ 121
+TFSPV K TT+R+VL +A +NW L QLDV+NAFL GTL E+VYM P G V +P+
Sbjct: 1029 ETFSPVIKATTIRVVLDVAVKKNWPLKQLDVNNAFLQGTLTEEVYMAQPPGFVDKDRPSH 1088
Query: 122 VCKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVYVDDVI 181
VC+L+K++YGLKQA R WY +L HL N+G+ + +D SLF+ T LLVYVDD+I
Sbjct: 1089 VCRLRKAIYGLKQAPRAWYMELKQHLLNIGFVNSLADTSLFIYSHGTTLLYLLVYVDDII 1148
Query: 182 LFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLLTETGT 241
+ G+ V SL F IKD L YFLG+E ++ G+ L QRKY DLL +
Sbjct: 1149 VTGSDHKSVSAVLSSLAERFSIKDPTDLHYFLGIEATRTNTGLHLMQRKYMTDLLAKHNM 1208
Query: 242 LGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLSQFMSN 301
L +KPV+TPL S KL ++ G +DA+ YR +VG L YL TRPDI+FA +LSQFM
Sbjct: 1209 LDAKPVATPLPTSPKLTLHGGTKLNDASEYRSVVGSLQYLAFTRPDIAFAVNRLSQFMHQ 1268
Query: 302 PMTDHYKAALRVLRFL 317
P +DH++AA RVLR+L
Sbjct: 1269 PTSDHWQAAKRVLRYL 1284
>At1g59265 polyprotein, putative
Length = 1466
Score = 296 bits (759), Expect = 8e-81
Identities = 157/325 (48%), Positives = 210/325 (64%), Gaps = 2/325 (0%)
Query: 2 AEIAALEKNETWKIVDLPQG-VKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLD 60
+EI A N TW +V P V +G +W++ K N+DG+L RYKARLVAKGYNQ GLD
Sbjct: 974 SEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLD 1033
Query: 61 YFDTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAG-VPTMKP 119
Y +TFSPV K T++R+VL +A ++W + QLDV+NAFL GTL +DVYM+ P G + +P
Sbjct: 1034 YAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRP 1093
Query: 120 NQVCKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVYVDD 179
N VCKL+K+LYGLKQA R WY +L ++L +G+ + SD SLFV + +LVYVDD
Sbjct: 1094 NYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDD 1153
Query: 180 VILFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLLTET 239
+++ GN D+L F +KD L YFLG+E G+ L QR+Y LDLL T
Sbjct: 1154 ILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLART 1213
Query: 240 GTLGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLSQFM 299
+ +KPV+TP+ PS KL + G +D T YR +VG L YL TRPDIS+A +LSQFM
Sbjct: 1214 NMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFM 1273
Query: 300 SNPMTDHYKAALRVLRFLKTSPGLG 324
P +H +A R+LR+L +P G
Sbjct: 1274 HMPTEEHLQALKRILRYLAGTPNHG 1298
>At1g58889 polyprotein, putative
Length = 1466
Score = 295 bits (755), Expect = 2e-80
Identities = 156/325 (48%), Positives = 209/325 (64%), Gaps = 2/325 (0%)
Query: 2 AEIAALEKNETWKIVDLPQG-VKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLD 60
+EI A N TW +V P V +G +W++ K N+DG+L RYKAR VAKGYNQ GLD
Sbjct: 974 SEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARFVAKGYNQRPGLD 1033
Query: 61 YFDTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAG-VPTMKP 119
Y +TFSPV K T++R+VL +A ++W + QLDV+NAFL GTL +DVYM+ P G + +P
Sbjct: 1034 YAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRP 1093
Query: 120 NQVCKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVYVDD 179
N VCKL+K+LYGLKQA R WY +L ++L +G+ + SD SLFV + +LVYVDD
Sbjct: 1094 NYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDD 1153
Query: 180 VILFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLLTET 239
+++ GN D+L F +KD L YFLG+E G+ L QR+Y LDLL T
Sbjct: 1154 ILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLART 1213
Query: 240 GTLGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLSQFM 299
+ +KPV+TP+ PS KL + G +D T YR +VG L YL TRPDIS+A +LSQFM
Sbjct: 1214 NMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFM 1273
Query: 300 SNPMTDHYKAALRVLRFLKTSPGLG 324
P +H +A R+LR+L +P G
Sbjct: 1274 HMPTEEHLQALKRILRYLAGTPNHG 1298
>At1g47520 hypothetical protein
Length = 634
Score = 290 bits (742), Expect = 7e-79
Identities = 149/297 (50%), Positives = 204/297 (68%), Gaps = 5/297 (1%)
Query: 33 IKRNADGTLARYKARLVAKGYNQIEGLDYFDTFSPVAKLTTVRMVLALAAAQNWHLHQLD 92
+K +D +L RYKARLV KGY Q EGLDY DTFSPVAK+ TV+++L ++A++ W L+QLD
Sbjct: 316 VKFLSDDSLERYKARLVFKGYTQKEGLDYTDTFSPVAKMATVKLLLKVSASKQWFLNQLD 375
Query: 93 VDNAFLHGTLDEDVYMNIPAGVPTMK-----PNQVCKLQKSLYGLKQASRKWYEKLSSHL 147
+ NAFL+G L+E +YM +P G K PN VC+L+KS+YGLKQASR+W++KL + L
Sbjct: 376 ISNAFLNGDLEETIYMKLPEGYADSKGDSLPPNAVCRLKKSIYGLKQASRQWFKKLRNAL 435
Query: 148 RNLGYSQATSDHSLFVKFQDTLFAGLLVYVDDVILFGNCLAEFQVVKDSLHTAFGIKDLV 207
LG+ + DH+LF++ T F LVYVDD+++ + ++L +F +++L
Sbjct: 436 VQLGFVKGHGDHTLFLRCFGTEFIAALVYVDDIVIASTTETAATQLTNALKESFRLRELG 495
Query: 208 ILKYFLGLEVAHSSLGISLCQRKYCLDLLTETGTLGSKPVSTPLDPSCKLVVNQGEPYSD 267
LKYFLGLEVA +S GISLCQRKY L+LLT TG L + STP+ P+ L + GE D
Sbjct: 496 PLKYFLGLEVARTSEGISLCQRKYALELLTSTGMLDCQHSSTPMIPNLHLSKSDGELLED 555
Query: 268 ATAYRRLVGRLLYLTTTRPDISFATQQLSQFMSNPMTDHYKAALRVLRFLKTSPGLG 324
YRRLVGRL+YLT TRPDI+FA +L Q+ S P T H +A +VL+++K + G G
Sbjct: 556 KEYYRRLVGRLMYLTITRPDITFAVNKLCQYSSTPRTAHLQAVYKVLQYIKGTIGQG 612
>At4g16870 retrotransposon like protein
Length = 1474
Score = 289 bits (740), Expect = 1e-78
Identities = 151/316 (47%), Positives = 205/316 (64%), Gaps = 2/316 (0%)
Query: 3 EIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDYF 62
E A ++N TW +V + +G KWV+++K +G + +YKARLVAKG+NQ G+DY
Sbjct: 985 EFDAQQRNHTWDLVP-HESQLLVGCKWVFKLKYLPNGAIDKYKARLVAKGFNQQYGVDYA 1043
Query: 63 DTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAG-VPTMKPNQ 121
+TFSPV K TT+R+VL +A ++W + QLDV+NAFL GTL E+VYM P G + +P
Sbjct: 1044 ETFSPVIKSTTIRLVLDVAVKKDWEIKQLDVNNAFLQGTLTEEVYMAQPPGFIDKDRPTH 1103
Query: 122 VCKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVYVDDVI 181
VC+L+K++YGLKQA R WY +L HL N+G+ + SD SLF+ T F +LVYVDD+I
Sbjct: 1104 VCRLRKAIYGLKQAPRAWYMELKQHLFNIGFVNSLSDASLFIYCHGTTFVYVLVYVDDII 1163
Query: 182 LFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLLTETGT 241
+ G+ + V SL F IKD L YFLG+E + G+ L QRKY DLL +
Sbjct: 1164 VTGSDKSSIDAVLTSLAERFSIKDPTDLHYFLGIEATRTKQGLHLMQRKYIKDLLAKHNM 1223
Query: 242 LGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLSQFMSN 301
+KPV TPL S KL ++ G +DA+ YR +VG L YL TRPDI++A +LSQ M
Sbjct: 1224 ADAKPVLTPLPTSPKLTLHGGTKLNDASEYRSVVGSLQYLAFTRPDIAYAVNRLSQLMPQ 1283
Query: 302 PMTDHYKAALRVLRFL 317
P DH++AA RVLR+L
Sbjct: 1284 PTEDHWQAAKRVLRYL 1299
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.321 0.137 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,036,343
Number of Sequences: 26719
Number of extensions: 286152
Number of successful extensions: 894
Number of sequences better than 10.0: 96
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 637
Number of HSP's gapped (non-prelim): 125
length of query: 324
length of database: 11,318,596
effective HSP length: 99
effective length of query: 225
effective length of database: 8,673,415
effective search space: 1951518375
effective search space used: 1951518375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0013.3