BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0011b.6
(189 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g16680 putative non-LTR retroelement reverse transcriptase 59 1e-09
At3g25270 hypothetical protein 53 8e-08
At4g29090 putative protein 51 3e-07
At2g15510 putative non-LTR retroelement reverse transcriptase 50 7e-07
At5g20800 putative protein 49 1e-06
At2g34320 putative non-LTR retroelement reverse transcriptase 49 2e-06
At3g45550 putative protein 48 3e-06
At3g09510 putative non-LTR reverse transcriptase 47 6e-06
At2g31520 putative non-LTR retroelement reverse transcriptase 47 6e-06
At2g25550 putative non-LTR retroelement reverse transcriptase 47 6e-06
At2g17910 putative non-LTR retroelement reverse transcriptase 47 8e-06
At2g45230 putative non-LTR retroelement reverse transcriptase 45 2e-05
At2g15540 putative non-LTR retroelement reverse transcriptase 45 3e-05
At2g02650 putative reverse transcriptase 44 5e-05
At3g42890 putative protein 42 2e-04
At2g41580 putative non-LTR retroelement reverse transcriptase 41 3e-04
At1g33710 hypothetical protein 41 3e-04
At1g47910 reverse transcriptase, putative 41 4e-04
At2g01840 putative non-LTR retroelement reverse transcriptase 39 0.001
At4g11710 putative protein 38 0.004
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 59.3 bits (142), Expect = 1e-09
Identities = 43/169 (25%), Positives = 71/169 (41%), Gaps = 10/169 (5%)
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWF-----ASSLSLRVNLFATVEDFV 59
L R + GC C E+ET+ HL + P VW A + ++F+ + +
Sbjct: 1025 LRSRGIRTADGCLFCKEEIETINHLLFQCPFARQVWALSLIQAPATGFGTSIFSNINHVI 1084
Query: 60 SEMVREGMPEVLAAVQT-MLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVRVHESP 118
G+P + V +L+ IW+++N +FQ ++A A + W+ E
Sbjct: 1085 QNSQNFGIPRHMRTVSPWLLWEIWKNRNKTLFQGTGLTSSEIVAKAYEECNLWINAQEKS 1144
Query: 119 HAGRELPS--RWKRPATRAVKVNLD-ARVHDGSMAGLVLVARDENEEVL 164
G PS +W P +K N+ A +AG+ V RD +VL
Sbjct: 1145 SGGVS-PSEHKWNPPPAGELKCNIGVAWSRQKQLAGVSWVLRDSMGQVL 1192
>At3g25270 hypothetical protein
Length = 343
Score = 53.1 bits (126), Expect = 8e-08
Identities = 47/175 (26%), Positives = 74/175 (41%), Gaps = 19/175 (10%)
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSL------SLRVNLFATVEDF 58
L +R + P C C E ET +HLF + VW AS + + + + +E
Sbjct: 45 LKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQQVWRASGIPHQELRTTGITMETKMELL 104
Query: 59 VSEMVREGMPEVLAAVQTMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGW------- 111
+S + P++ +L+ +W+S+N LVFQ+ S L A W
Sbjct: 105 LSSCLANRQPQLFNLAIWILWRLWKSRNQLVFQQKSISWQNTLQRARNDVQEWEDTNTYV 164
Query: 112 ----VRVHESPHAGRELP-SRWKRPATRAVKVNLD-ARVHDGSMAGLVLVARDEN 160
+VH S H + ++W+RP + +K N D A H A + RDEN
Sbjct: 165 QSLNQQVHSSRHQQPTMARTKWQRPPSTWIKYNYDGAFNHQTRNAKAGWLMRDEN 219
>At4g29090 putative protein
Length = 575
Score = 51.2 bits (121), Expect = 3e-07
Identities = 55/206 (26%), Positives = 85/206 (40%), Gaps = 26/206 (12%)
Query: 4 ALIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSL----------SLRVNLFA 53
AL R + + C C + ET+ HL + W SS+ S+ VNL+
Sbjct: 283 ALAYRHLSKESACIRCPSCKETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYW 342
Query: 54 TVEDFVSEMVREGMPEVLAAVQT---MLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSG 110
+ G P+ A Q +L+ +W+++N LVF+ F+ VL A
Sbjct: 343 VFN------LGNGNPQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEE 396
Query: 111 W-VRVH-----ESPHAGRELPSRWKRPATRAVKVNLDARVH-DGSMAGLVLVARDENEEV 163
W +R P R RW+ P + VK N DA + D G+ V R+E EV
Sbjct: 397 WRIRTEAESCGTKPQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEV 456
Query: 164 LEATSSYPWPILSPLLAEALSLRWSM 189
+ + S L AE ++RW++
Sbjct: 457 KWMGARALPKLKSVLEAELEAMRWAV 482
>At2g15510 putative non-LTR retroelement reverse transcriptase
Length = 1138
Score = 50.1 bits (118), Expect = 7e-07
Identities = 48/185 (25%), Positives = 77/185 (40%), Gaps = 34/185 (18%)
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSL------RVNLFATVE-- 56
+I+R + +DP C ICG+E E+ H+ M VW S + ++FA ++
Sbjct: 849 IIRRGMSIDPRCQICGDEGESTNHVLFTCSMARQVWALSGVPTPEFGFQNASIFANIQFL 908
Query: 57 ------DFVSEMVREGMPEVLAAVQTMLYAIWESQNGLVFQRMSF--------DMGWVLA 102
V ++V+ P V L+ +W+++N L F ++F L
Sbjct: 909 FELKKMILVPDLVKRSWPWV-------LWRLWKNRNKLFFDGITFCPLNSIVKIQEDTLE 961
Query: 103 WAVALGSGWVRVHESPHAGRELP--SRWKRPATRAVKVNL-DARVHDGSMAGLVLVARDE 159
W A +RV ES R +P W+ P VK N+ A + G V RDE
Sbjct: 962 WFQA--QSQIRVSESEEGQRVIPFTHSWEPPPEGWVKCNIGSAWSGKKKVCGGAWVLRDE 1019
Query: 160 NEEVL 164
+ V+
Sbjct: 1020 HGSVI 1024
>At5g20800 putative protein
Length = 359
Score = 49.3 bits (116), Expect = 1e-06
Identities = 53/205 (25%), Positives = 85/205 (40%), Gaps = 19/205 (9%)
Query: 1 MRSALIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVNLFATVEDFVS 60
+R L +R + D GCA CG +T+ H + +W S + + +F + D +
Sbjct: 150 VRENLRKRGINCDIGCARCGATEKTINHTLFQCHPARQIWALSQIPTVIGIFPS--DSIY 207
Query: 61 EMVREGMPEVLAAVQTMLYA-----IWESQNGLVFQRMSFDMGWVLAWAVALGSGW---- 111
E + V +AV + Y IW+++N +F + D +L+ A W
Sbjct: 208 ENLDHLFWRVQSAVDSFSYPWIIWYIWKARNAKLFDNVDKDPLDILSLAEKEAQSWKSAQ 267
Query: 112 VRVH-ESPHAGRELPSRWKRPATRAVKVNLDARVHDGS------MAGLVLVARDENEEVL 164
V +H E+P + E +R + + V L V DGS +GL NEE
Sbjct: 268 VELHSENPVSFLESRTRVRNISEDNVYAGLRCFV-DGSWKESDQFSGLGWFCTSSNEETS 326
Query: 165 EATSSYPWPILSPLLAEALSLRWSM 189
++ LSPL E +L W M
Sbjct: 327 SMGTTNLRRSLSPLHTEVEALLWGM 351
>At2g34320 putative non-LTR retroelement reverse transcriptase
Length = 292
Score = 48.9 bits (115), Expect = 2e-06
Identities = 49/194 (25%), Positives = 81/194 (41%), Gaps = 20/194 (10%)
Query: 13 DPGCAICGNEVETMEHLFLEFPMFLGVWFASSL----------SLRVNLFATVEDFVSEM 62
+ C C + ET+ HL + VW S + SL NL+ + E+
Sbjct: 9 EASCVRCPDSRETVNHLLFKCCFARLVWAISPIPAYPEGEWTDSLYANLYWVLN---LEV 65
Query: 63 VREGMPEVLAAVQTMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVRVHE------ 116
+ ++ V +L+ +W+S+N L+F+ +D VL A+ W E
Sbjct: 66 EIPKLGKIGNLVPWLLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKAS 125
Query: 117 SPHAGRELPSRWKRPATRAVKVNLDARVH-DGSMAGLVLVARDENEEVLEATSSYPWPIL 175
P R L +WK P + VK N DA + G+ + R+E+ VL +
Sbjct: 126 GPQVERNLSVQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTK 185
Query: 176 SPLLAEALSLRWSM 189
+ L AE +LRW++
Sbjct: 186 NVLEAELEALRWAV 199
>At3g45550 putative protein
Length = 851
Score = 48.1 bits (113), Expect = 3e-06
Identities = 38/153 (24%), Positives = 62/153 (39%), Gaps = 16/153 (10%)
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVN--LFATVEDFVSEM 62
L R + +DPGC C E E++ H P W S L + L +ED +S +
Sbjct: 694 LTTRGMRIDPGCPRCRRENESINHALFTCPFATMAWRLSDTPLYRSSILSNNIEDNISNI 753
Query: 63 VREGMPEVLAAVQT-----MLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVRVHES 117
+ + Q +L+ IW+++N +VF + + A A + W+ ++
Sbjct: 754 LLLLQNTTITDSQKLIPFWLLWRIWKARNNVVFNNLRESPSITVVRAKAETNEWLNATQT 813
Query: 118 PHAGRELPSR--------WKRPATRAVKVNLDA 142
R LP R W +P +K N DA
Sbjct: 814 -QGPRRLPKRTTAAGNTTWVKPQMPYIKCNFDA 845
>At3g09510 putative non-LTR reverse transcriptase
Length = 484
Score = 47.0 bits (110), Expect = 6e-06
Identities = 37/155 (23%), Positives = 60/155 (37%), Gaps = 20/155 (12%)
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVNLF---------ATV 55
L R + +DP C C E E++ H P W S SL N + +
Sbjct: 189 LTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNI 248
Query: 56 EDFVSEMVREGMPEVLAAVQTMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVRVH 115
+FV + ++L +++ IW+++N +VF + + A A W+
Sbjct: 249 LNFVQDTTMSDFHKLLPV--WLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNAT 306
Query: 116 ESPHAGRELPSR--------WKRPATRAVKVNLDA 142
+S H P+R W+ P VK N DA
Sbjct: 307 QS-HKKTPSPTRQIAENKIEWRNPPATYVKCNFDA 340
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 47.0 bits (110), Expect = 6e-06
Identities = 37/155 (23%), Positives = 61/155 (38%), Gaps = 20/155 (12%)
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVNL---------FATV 55
L R + +DP C C E E++ H P W+ S SL N + +
Sbjct: 1229 LTTRGMRIDPICPRCHRENESINHALFTCPFATMAWWLSDSSLIRNQLMSNDFEENISNI 1288
Query: 56 EDFVSEMVREGMPEVLAAVQTMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVRVH 115
+FV + ++L +++ IW+++N +VF + + A A W+
Sbjct: 1289 LNFVQDTTMSDFHKLLPV--WLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNAT 1346
Query: 116 ESPHAGRELPSR--------WKRPATRAVKVNLDA 142
+S H P+R W+ P VK N DA
Sbjct: 1347 QS-HKKTPSPTRQIAENKIEWRNPPATYVKCNFDA 1380
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 47.0 bits (110), Expect = 6e-06
Identities = 37/155 (23%), Positives = 60/155 (37%), Gaps = 20/155 (12%)
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVNLF---------ATV 55
L R + +DP C C E E++ H P W S SL N + +
Sbjct: 1455 LTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNI 1514
Query: 56 EDFVSEMVREGMPEVLAAVQTMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVRVH 115
+FV + ++L +++ IW+++N +VF + + A A W+
Sbjct: 1515 LNFVQDTTMSDFHKLLPV--WLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNAT 1572
Query: 116 ESPHAGRELPSR--------WKRPATRAVKVNLDA 142
+S H P+R W+ P VK N DA
Sbjct: 1573 QS-HKKTPSPTRQIAENKIEWRNPPATYVKCNFDA 1606
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 46.6 bits (109), Expect = 8e-06
Identities = 42/191 (21%), Positives = 77/191 (39%), Gaps = 9/191 (4%)
Query: 8 RKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLS-----LRVNLFATVEDFVSEM 62
R + D GC +C E ET+ H+ E P+ VW + LS +++ + +
Sbjct: 1054 RGIRSDDGCLMCDTENETINHILFECPLARQVWAITHLSSAGSEFSNSVYTNMSRLIDLT 1113
Query: 63 VREGMPEVLAAVQT-MLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGW--VRVHESPH 119
+ +P L V +L+ +W+++N L+F+ ++ A W + H
Sbjct: 1114 QQNDLPHHLRFVSPWILWFLWKNRNALLFEGKGSITTTLVDKAYEAYHEWFSAQTHMQND 1173
Query: 120 AGRELPSRWKRPATRAVKVNLD-ARVHDGSMAGLVLVARDENEEVLEATSSYPWPILSPL 178
++W P +K N+ A +G V RD +VL + + SP
Sbjct: 1174 EKHLKITKWCPPLPGELKCNIGFAWSKQHHFSGASWVVRDSQGKVLLHSRRSFNEVHSPY 1233
Query: 179 LAEALSLRWSM 189
A+ S W++
Sbjct: 1234 SAKIRSWEWAL 1244
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 45.1 bits (105), Expect = 2e-05
Identities = 50/203 (24%), Positives = 77/203 (37%), Gaps = 31/203 (15%)
Query: 3 SALIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSL------SLRVNLFATVE 56
S L R + + C C + ET+ HL + P W S L +LF +
Sbjct: 1079 SNLAYRHLAREKSCVRCPSHGETVNHLLFKCPFARLTWAISPLPAPPGGEWAESLFRNMH 1138
Query: 57 DFVSEMVREGMPEVL---AAVQTMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVR 113
+S V + PE A + +L+ +W+++N LVF+ F V+ A W
Sbjct: 1139 HVLS--VHKSQPEESDHHALIPWILWRLWKNRNDLVFKGREFTAPQVILKATEDMDAWNN 1196
Query: 114 VHES----PHAGRELPSRWKRPATRAVKVNLDA---------------RVHDGSMAGLVL 154
E + R+ +W+ P+ VK N D R H G + L L
Sbjct: 1197 RKEPQPQVTSSTRDRCVKWQPPSHGWVKCNTDGAWSKDLGNCGVGWVLRNHTGRLLWLGL 1256
Query: 155 VARDENEEVLEA-TSSYPWPILS 176
A + VLE + W +LS
Sbjct: 1257 RALPSQQSVLETEVEALRWAVLS 1279
>At2g15540 putative non-LTR retroelement reverse transcriptase
Length = 1225
Score = 44.7 bits (104), Expect = 3e-05
Identities = 50/196 (25%), Positives = 83/196 (41%), Gaps = 13/196 (6%)
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSL------RVNLFATVEDF 58
L R + + C CG E E++ HL P +W S + R +LF +
Sbjct: 953 LFSRHIGTEKVCPRCGAEEESINHLLFLCPPSRQIWALSPIPSSEYIFPRNSLFYNFDFL 1012
Query: 59 VSEMVREGMPE-VLAAVQTMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVRVHES 117
+S + E ++ +L+ IW+S+N +F+ + +L +A+ + W + +
Sbjct: 1013 LSRGKEFDIAEDIMEIFPWILWYIWKSRNRFIFENVIESPQVILDFAIQEANVWKQANSK 1072
Query: 118 PHAGRELPSR---WKRPATRAVKVNLDARVH-DGSMAGLVLVARDENEEVLEATSSYPWP 173
A P + P TR V DA H +++G V D++ +L S
Sbjct: 1073 EVATEYPPPQVVPANLPPTRNV-CQFDASWHLKDTLSGHGWVLVDQDIVLLLGLKS-ARK 1130
Query: 174 ILSPLLAEALSLRWSM 189
LSPL AE SL W+M
Sbjct: 1131 SLSPLHAEVDSLLWAM 1146
>At2g02650 putative reverse transcriptase
Length = 365
Score = 43.9 bits (102), Expect = 5e-05
Identities = 33/163 (20%), Positives = 67/163 (40%), Gaps = 19/163 (11%)
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSL--RVNLFATVEDFVSEM 62
L R ++ DP C C E ET+ H+ P VW ++++ + + ++ ED ++ +
Sbjct: 64 LRSRNIDADPICQRCCIEEETIHHIMFNCPYTQSVWRSANIIIGNQWGPPSSFEDNLNRL 123
Query: 63 VREGMPEVLAAVQTML-----YAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVRVHES 117
++ + ++ L + +W+S+N +FQ+ + + + W+ +E+
Sbjct: 124 IQLSKTQTTNSLDRFLPFWIMWRLWKSRNVFLFQQKCQSPDYEARKGIQDATEWLNANET 183
Query: 118 P------------HAGRELPSRWKRPATRAVKVNLDARVHDGS 148
R S+W P VK N D+ GS
Sbjct: 184 TENTNVHVATNPIQTSRRDSSQWNPPPEGWVKCNFDSGYTQGS 226
>At3g42890 putative protein
Length = 534
Score = 42.0 bits (97), Expect = 2e-04
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVNLFATV-EDFVSEMV 63
L++ + + GC+ C +ET EH+F P VW A + L LF T E + +
Sbjct: 135 LVKWNNDANGGCSFCDEAMETREHIFFSCPYSSAVWSALTKDLLGQLFTTSWESMTALLT 194
Query: 64 REGMPEVLAAV-----QTMLYAIWESQNG 87
P+V V Q ++ +W +NG
Sbjct: 195 DPPRPKVHMFVLRYVFQLSIHTLWRERNG 223
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 41.2 bits (95), Expect = 3e-04
Identities = 36/167 (21%), Positives = 72/167 (42%), Gaps = 12/167 (7%)
Query: 8 RKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSL-----SLRVNLFATVEDFVSEM 62
R V ++ GC++C + ET+ H+ + P+ VW + + ++F V +
Sbjct: 805 RGVLIEDGCSMCPEKNETLNHILFQCPLARQVWALTPMQSPNHGFGDSIFTNVNHVIGNC 864
Query: 63 VR-EGMPEVLAAVQTMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVRVHE---SP 118
E P + +++ +W+++N +F+ + ++ A+ W++ HE S
Sbjct: 865 HNTELSPHLRYVSPWIIWILWKNRNKRLFEGIGSVSLSIVGKALEDCKEWLKAHELICSK 924
Query: 119 HAGRELPSRWKRPATRAVKVNLD-ARVHDGSMAGLVLVARDENEEVL 164
++L W P +K N+ A MAG+ V R+ VL
Sbjct: 925 EPTKDL--TWIPPLMNELKCNIGIAWSKKHQMAGVSWVVRNWKGRVL 969
>At1g33710 hypothetical protein
Length = 210
Score = 41.2 bits (95), Expect = 3e-04
Identities = 27/88 (30%), Positives = 45/88 (50%), Gaps = 10/88 (11%)
Query: 10 VEVDPGCAICGNEVETMEHLFL--EFPMFLGVWFASSLSLRVNLFATV-----EDFVSEM 62
+++ C +C ++E +HLFL EF FL W S+ L + F+ V D+ +
Sbjct: 84 MQLQTTCGLCSLDIEDRDHLFLTCEFACFL--WHTVSVRLELPAFSFVVWNDLMDWTLQR 141
Query: 63 VREGMPEV-LAAVQTMLYAIWESQNGLV 89
R P + VQ++LYAIW+ +N +
Sbjct: 142 NRRSPPTLRKLIVQSVLYAIWKQRNNFL 169
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 40.8 bits (94), Expect = 4e-04
Identities = 31/132 (23%), Positives = 53/132 (39%), Gaps = 11/132 (8%)
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVNLFA-----TVEDFV 59
L +R + D GC CG E++ H + +W S + +F T D +
Sbjct: 855 LRKRGILCDKGCVSCGASEESINHTLFQCHPARQIWALSQIPTAPGIFPSNSIFTNLDHL 914
Query: 60 SEMVREGMPEVLAAVQTMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGW----VRVH 115
+ G+ A +++ IW+++N VF+ + D +L AV W V +H
Sbjct: 915 FWRIPSGVDS--APYPWIIWYIWKARNEKVFENVDKDPMEILLLAVKEAQSWQEAQVELH 972
Query: 116 ESPHAGRELPSR 127
H + SR
Sbjct: 973 SERHGSLSIDSR 984
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 39.3 bits (90), Expect = 0.001
Identities = 46/201 (22%), Positives = 79/201 (38%), Gaps = 25/201 (12%)
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLS------LRVNLFATVEDF 58
L R + DP C C N ET+ H+ VW +++ S NL +
Sbjct: 1415 LRNRNIPADPTCQRCCNADETINHIIFTCSYAQVVWRSANFSGSNRLCFTDNLEENIRLI 1474
Query: 59 VSEMVREGMPEVLAAVQ-TMLYAIWESQNGLVFQRMSFDMGWVLA---------WAVALG 108
+ + +P + + +++ +W+S+N +FQ++ W +A W +
Sbjct: 1475 LQGKKNQNLPILNGLMPFWIMWRLWKSRNEYLFQQLD-RFPWKVAQKAEQEATEWVETMV 1533
Query: 109 SGWVRVHESPHAGRELPSR---WKRPATRAVKVNLDA---RVHDGSMAGLVLVARDENEE 162
+ H + + SR W P +K N D+ + D + G +L RD N
Sbjct: 1534 NDTAISHNTAQSNDRPLSRSKQWSSPPEGFLKCNFDSGYVQGRDYTSTGWIL--RDCNGR 1591
Query: 163 VLEATSSYPWPILSPLLAEAL 183
VL + + S L AEAL
Sbjct: 1592 VLHSGCAKLQQSYSALQAEAL 1612
>At4g11710 putative protein
Length = 473
Score = 37.7 bits (86), Expect = 0.004
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 12 VDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVNLFATVEDFVSEMVREGMPEVL 71
VD C +C +E+ +HLF P +W + ++ F T + V P+ +
Sbjct: 343 VDATCILCNKALESRDHLFFSCPFATEIWEPLAKTIYNTCFYTDWQTIINNVSRNWPDRI 402
Query: 72 AA------VQTMLYAIWESQN 86
A +Q +Y +W +N
Sbjct: 403 AGFLARCILQVTIYTLWRERN 423
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.322 0.134 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,140,420
Number of Sequences: 26719
Number of extensions: 155600
Number of successful extensions: 466
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 405
Number of HSP's gapped (non-prelim): 67
length of query: 189
length of database: 11,318,596
effective HSP length: 94
effective length of query: 95
effective length of database: 8,807,010
effective search space: 836665950
effective search space used: 836665950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0011b.6