BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0010.2
(370 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g52660 putative RNA binding protein 418 e-117
At4g00830 unknown protein 375 e-104
At5g28390 putative protein 145 5e-35
At5g28330 putative protein 141 7e-34
At4g34110 poly(A)-binding protein 99 5e-21
At1g71770 polyadenylate-binding protein 5 95 7e-20
At3g16380 putative poly(A) binding protein 88 9e-18
At2g23350 putative poly(A) binding protein 87 1e-17
At1g49760 Putative Poly-A Binding Protein (F14J22.3) 82 4e-16
At2g36660 putative poly(A) binding protein 82 5e-16
At1g11650 putative DNA binding protein 79 5e-15
At5g54900 unknown protein 78 9e-15
At4g27000 putative DNA binding protein 77 2e-14
At1g22760 putative polyA-binding protein, PAB3 75 6e-14
At2g44710 putative heterogeneous nuclear ribonucleoprotein 71 8e-13
At5g19350 DNA binding protein ACBF - like 69 5e-12
At3g07810 putative RNA-binding protein 69 5e-12
At5g50250 RNA-binding protein-like 68 9e-12
At5g40490 ribonucleoprotein -like 67 1e-11
At1g60000 unknown protein 66 3e-11
>At3g52660 putative RNA binding protein
Length = 471
Score = 418 bits (1075), Expect = e-117
Identities = 198/325 (60%), Positives = 262/325 (79%), Gaps = 5/325 (1%)
Query: 6 TNDEVEKKKHAELLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGE 65
T +E EKK+H ELLALPPH SEVY+GGI + +E DL+ FC S+GEV+EVRIM+ K+SG+
Sbjct: 72 TEEEEEKKRHVELLALPPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGD 131
Query: 66 RKGYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKV 125
KGYAFV F++K+LA++AI+ LNN++F+GK+IKCS++QAKHRLF+GN+P+ W D+KK
Sbjct: 132 GKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRIKCSTTQAKHRLFLGNVPRNWMESDIKKA 191
Query: 126 VADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSW 185
+GPGV +EL K+ Q+ GRNRGFAFIEYYNHACAEYS+QKMSN +FKL++NAPTVSW
Sbjct: 192 ANRIGPGVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMSNPSFKLDDNAPTVSW 251
Query: 186 AEPRN--SESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRF 243
AE R+ S+ SQVKA+Y+KNLP +ITQ+ LK LFEHHGKI KVV+PPAK G+E SR+
Sbjct: 252 AESRSGGGGDSSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRY 311
Query: 244 GFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRSSGTS--NSQKPVVLPTYPH 301
GFVH+++R+S M+ALKNTE+YEIDG L+C+LAKP+ADQ+++ + N QK + P YP
Sbjct: 312 GFVHYAERTSVMRALKNTERYEIDGHMLDCTLAKPQADQKTNTNTVQNVQKSQLQPNYPP 371
Query: 302 RLGYGMVGGAYGGIGAGYGAAGFAQ 326
L YGM +G +G G+GA+ ++Q
Sbjct: 372 LLSYGMAPSPFGALG-GFGASAYSQ 395
>At4g00830 unknown protein
Length = 495
Score = 375 bits (962), Expect = e-104
Identities = 181/324 (55%), Positives = 251/324 (76%), Gaps = 15/324 (4%)
Query: 8 DEVEKKKHAELLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERK 67
D+ +++K++ LL+LPPH SEV+IGG+ +V EEDLR C+ +GE+ EVR+MK ++SG+ K
Sbjct: 98 DDEDREKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSK 157
Query: 68 GYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVA 127
GYAFVAFKTK++A +AIEEL++ EFKGK I+CS S+ K+RLFIGNIPK WT ++ +KV+
Sbjct: 158 GYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIE 217
Query: 128 DVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAE 187
DVGPGV +IEL+KD ++ RNRGFAF+ YYN+ACA+YSRQKM +SNFKLE NAPTV+WA+
Sbjct: 218 DVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWAD 277
Query: 188 PRNS--ESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGF 245
P++S S+A +QVKA+YVKN+PEN + + LK+LF+ HG++TK+V PP K G K FGF
Sbjct: 278 PKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGG--KRDFGF 335
Query: 246 VHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQR------SSGTSNSQKPVVLPTY 299
VH+++RSSA+KA+K+TE+YE++G+ LE LAKP+A+++ S G + + P V PT+
Sbjct: 336 VHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHPTF 395
Query: 300 PHRLGYGMVGGAYGGIGAGYGAAG 323
G YG +GAG G AG
Sbjct: 396 G-----GFAAAPYGAMGAGLGIAG 414
>At5g28390 putative protein
Length = 380
Score = 145 bits (365), Expect = 5e-35
Identities = 75/131 (57%), Positives = 97/131 (73%), Gaps = 5/131 (3%)
Query: 169 MSNSNFKLENNAPTVSWAEPRNSES--SAVSQVKAVYVKNLPENITQDSLKKLFEHHGKI 226
MSN +FKL++NAPTVSWAE R+ S+ SQVKA+Y+KNLP +ITQ+ LK LFEHHGKI
Sbjct: 1 MSNPSFKLDDNAPTVSWAESRSGGEGDSSASQVKALYIKNLPRDITQERLKALFEHHGKI 60
Query: 227 TKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRSSG 286
KVV+PPAK G+E SR+GFVH+++R+S M+ALKNTE+YEID L A ++G
Sbjct: 61 LKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEIDASAYSQPLM--HAGGHAAG 118
Query: 287 TSNSQKPVVLP 297
S P++LP
Sbjct: 119 -GMSMMPIMLP 128
>At5g28330 putative protein
Length = 180
Score = 141 bits (355), Expect = 7e-34
Identities = 73/131 (55%), Positives = 95/131 (71%), Gaps = 5/131 (3%)
Query: 169 MSNSNFKLENNAPTVSWAEPRNSESS--AVSQVKAVYVKNLPENITQDSLKKLFEHHGKI 226
MSN +FKL++NAPTVSWAE R+ + SQVKA+Y+KNLP +ITQ+ LK L EHHGKI
Sbjct: 1 MSNPSFKLDDNAPTVSWAESRSGGEGDFSASQVKALYIKNLPRDITQERLKALLEHHGKI 60
Query: 227 TKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRSSG 286
KVV+PPAK G+E SR+GFVH+++R+S M+ALKNTE+YEID L A ++G
Sbjct: 61 LKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEIDASAYSQPLM--HAGGHAAG 118
Query: 287 TSNSQKPVVLP 297
S P++LP
Sbjct: 119 -GMSMMPIMLP 128
>At4g34110 poly(A)-binding protein
Length = 629
Score = 98.6 bits (244), Expect = 5e-21
Identities = 74/271 (27%), Positives = 134/271 (49%), Gaps = 18/271 (6%)
Query: 25 SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 84
++ +Y+G + NV++ L +G V VR+ + + GY +V F + A++AI
Sbjct: 35 NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAI 94
Query: 85 EELNNSEFKGKKIKCSSS--------QAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISI 136
+ELN GK I+ S +FI N+ + + + + G ++S
Sbjct: 95 QELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFG-NIVSC 153
Query: 137 ELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEPRNSESSAV 196
++ D SSG+++G+ F++Y N A+ + +K+ + L + V R S
Sbjct: 154 KVAVD--SSGQSKGYGFVQYANEESAQKAIEKL--NGMLLNDKQVYVGPFLRRQERDSTA 209
Query: 197 SQVK--AVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSR-FGFVHFSDRSS 253
++ K VYVKNL E+ T D LK F +GKIT V+ K G+ KS+ FGFV+F +
Sbjct: 210 NKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVV--MKDGEGKSKGFGFVNFENADD 267
Query: 254 AMKALKNTEKYEIDGKNLECSLAKPEADQRS 284
A +A+++ ++ D K A+ ++++ +
Sbjct: 268 AARAVESLNGHKFDDKEWYVGRAQKKSERET 298
Score = 81.6 bits (200), Expect = 6e-16
Identities = 76/330 (23%), Positives = 143/330 (43%), Gaps = 32/330 (9%)
Query: 25 SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 84
+ ++I + ++ + L S G + ++ SG+ KGY FV + +E A +AI
Sbjct: 123 AGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVA-VDSSGQSKGYGFVQYANEESAQKAI 181
Query: 85 EELNNSEFKGKKI-----------KCSSSQAKH-RLFIGNIPKKWTVEDMKKVVADVGPG 132
E+LN K++ ++++ K +++ N+ + T +D+K + G
Sbjct: 182 EKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGK- 240
Query: 133 VISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNF------------KLENNA 180
+ S ++KD G+++GF F+ + N A + + ++ F K E
Sbjct: 241 ITSAVVMKD--GEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERET 298
Query: 181 PTVSWAEPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEK 240
E E++ Q +YVKNL +I+ + LK++F G +T + +G K
Sbjct: 299 ELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSK 358
Query: 241 SRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQ--RSSGTSNSQKPVVL-P 297
GFV F+ A +A+ I+ K L ++A+ + D+ R + +PV + P
Sbjct: 359 GS-GFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQP 417
Query: 298 TYPHRLGYGMVGGAYGGIGAGYGAAGFAQV 327
+ R+ GG G YG A A +
Sbjct: 418 SVGPRMPVYPPGGPGIGQQMFYGQAPPAMI 447
Score = 33.9 bits (76), Expect = 0.15
Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 2/114 (1%)
Query: 178 NNAPTVSWAEPRNSESSAVSQV--KAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAK 235
N + + P S + +Q ++YV +L N+T L F G + V +
Sbjct: 12 NGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDL 71
Query: 236 SGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRSSGTSN 289
+ +G+V+F++ A +A++ + GK + + + R SG N
Sbjct: 72 VTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGN 125
>At1g71770 polyadenylate-binding protein 5
Length = 668
Score = 94.7 bits (234), Expect = 7e-20
Identities = 79/277 (28%), Positives = 133/277 (47%), Gaps = 16/277 (5%)
Query: 16 AELLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFK 75
AE L P+SS +Y+G + +V+E L V V +R+ + + GYA+V F
Sbjct: 36 AEALQTHPNSS-LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFA 93
Query: 76 TKELASQAIEELNNSEFKGKKIKCSSSQ--------AKHRLFIGNIPKKWTVEDMKKVVA 127
E AS+A+E LN + + + I+ S K +FI N+ + + + +
Sbjct: 94 NPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFS 153
Query: 128 DVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNS--NFKLENNAPTVSW 185
G ++S ++ D+ GR++G+ F+++ A+ + K++ N K V
Sbjct: 154 SFGT-ILSCKVAMDVV--GRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRR 210
Query: 186 AEPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGF 245
+ SES AV VYVKNLP+ IT D LKK F +G I+ V+ +SG +S FGF
Sbjct: 211 QDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRS-FGF 269
Query: 246 VHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQ 282
V+F +A A++ + L A+ ++D+
Sbjct: 270 VNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDR 306
Score = 79.3 bits (194), Expect = 3e-15
Identities = 71/299 (23%), Positives = 132/299 (43%), Gaps = 46/299 (15%)
Query: 64 GERKGYAFVAFKTKELASQAIEELNNSEFKGKKI--------------KCSSSQAKHRLF 109
G KGY FV F+ +E A AI++LN K++ + + + ++
Sbjct: 169 GRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVY 228
Query: 110 IGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKM 169
+ N+PK+ T +++KK G + S ++KD SG +R F F+ + + A + +KM
Sbjct: 229 VKNLPKEITDDELKKTFGKYGD-ISSAVVMKD--QSGNSRSFGFVNFVSPEAAAVAVEKM 285
Query: 170 SNSNFKLENNAPTVSWAEPRNS---------ESSAVSQVKAV-----YVKNLPENITQDS 215
+ L + V A+ ++ E +S+ + + Y+KNL +++ +
Sbjct: 286 NG--ISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEK 343
Query: 216 LKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSL 275
LK++F +G +T + G + FGFV +S+ A+ A+K I K L +L
Sbjct: 344 LKEMFSEYGNVTSCKVMMNSQGLSRG-FGFVAYSNPEEALLAMKEMNGKMIGRKPLYVAL 402
Query: 276 AKPEADQ-----------RSSGTSNSQKPVVLPTYPHRLGYGMVGGAYGGIGAGYGAAG 323
A+ + ++ RS GT S P + + H G + G + + G+ G
Sbjct: 403 AQRKEERQAHLQSLFTQIRSPGTM-SPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQG 460
Score = 38.9 bits (89), Expect = 0.005
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 26 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIE 85
S +Y+ + ++V++E L+ G V+ ++M + G +G+ FVA+ E A A++
Sbjct: 328 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMK 386
Query: 86 ELNNSEFKGKKIKCSSSQAK 105
E+N K + + +Q K
Sbjct: 387 EMNGKMIGRKPLYVALAQRK 406
>At3g16380 putative poly(A) binding protein
Length = 537
Score = 87.8 bits (216), Expect = 9e-18
Identities = 79/295 (26%), Positives = 140/295 (46%), Gaps = 39/295 (13%)
Query: 13 KKHAELLALPPHSSE---VYIGGIANNVSEEDL-RVFCQSVGEVSEVRIMKAKESGERKG 68
K + L HSS +Y+G ++ +V+E+DL F +V VS V + + +G+
Sbjct: 5 KTETQALGNHQHSSRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVS-VHLCRNSVTGKSMC 63
Query: 69 YAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAK-----------HRLFIGNIPKKW 117
YA++ F + AS A+ LN+S+ KGK ++ SQ L++ N+
Sbjct: 64 YAYINFDSPFSASNAMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSI 123
Query: 118 TVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNF--- 174
T ++++ G SI K ++ +G+++GF F+++ A +R + S
Sbjct: 124 TSSCLERMFCPFG----SILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGK 179
Query: 175 -----KLENNAPTVSWAEPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKV 229
K N + A ++S + VYVKNL E +T D L LF +G ++ V
Sbjct: 180 KLFVAKFINKDERAAMAGNQDSTN--------VYVKNLIETVTDDCLHTLFSQYGTVSSV 231
Query: 230 VLPPAKSGQEKSR-FGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQR 283
V+ + G +SR FGFV+F + +A KA+++ ++ K L A + ++R
Sbjct: 232 VV--MRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERR 284
Score = 73.9 bits (180), Expect = 1e-13
Identities = 64/283 (22%), Positives = 137/283 (47%), Gaps = 35/283 (12%)
Query: 26 SEVYIGGIANNVSEEDL-RVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 84
+ +Y+ + ++++ L R+FC G + ++++ E+G+ KG+ FV F T++ A A
Sbjct: 112 ANLYVKNLDSSITSSCLERMFCP-FGSILSCKVVE--ENGQSKGFGFVQFDTEQSAVSAR 168
Query: 85 EELNNSEFKGKKI------------KCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPG 132
L+ S GKK+ + +Q +++ N+ + T + + + + G
Sbjct: 169 SALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGT- 227
Query: 133 VISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEPRNSE 192
V S+ +++D GR+RGF F+ + N A+ + + + +L + V A ++
Sbjct: 228 VSSVVVMRD--GMGRSRGFGFVNFCNPENAKKAMESLCG--LQLGSKKLFVGKALKKDER 283
Query: 193 SSAVSQVKA-------------VYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQE 239
+ Q + +YVKNL E++ + L+++F +G+I + ++G+
Sbjct: 284 REMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRS 343
Query: 240 KSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQ 282
K FGFV FS+ + +A + + +DGK + +A+ + D+
Sbjct: 344 KG-FGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERKEDR 385
Score = 41.2 bits (95), Expect = 0.001
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 9 EVEKKKHAELLALPPHS--SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGER 66
E+ K+K ++ P+ S +Y+ ++ +++E LR G++ ++M E+G
Sbjct: 285 EMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVM-CHENGRS 343
Query: 67 KGYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAK 105
KG+ FV F E + QA LN GK I ++ K
Sbjct: 344 KGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERK 382
>At2g23350 putative poly(A) binding protein
Length = 662
Score = 87.0 bits (214), Expect = 1e-17
Identities = 71/267 (26%), Positives = 129/267 (47%), Gaps = 20/267 (7%)
Query: 28 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEEL 87
+Y+G + NV++ L + V +V VR+ + + GY +V + + A +A+++L
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 88 NNSEFKGKKIKCSSSQAKH--------RLFIGNIPKKWTVEDMKKVVADVGPGVISIELL 139
N S GK I+ + S LF+ N+ K + + + + G ++S ++
Sbjct: 108 NYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGT-IVSCKVA 166
Query: 140 KDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEPRNSE-SSAVSQ 198
D G++RG+ F+++ A+ + +K+ N K+ N+ R E SA +
Sbjct: 167 TD--HMGQSRGYGFVQFDTEDSAKNAIEKL---NGKVLNDKQIFVGPFLRKEERESAADK 221
Query: 199 VK--AVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSR-FGFVHFSDRSSAM 255
+K VYVKNL E T D LK F +G I+ V+ + G KSR FGFV+F + A
Sbjct: 222 MKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVV--MRDGDGKSRCFGFVNFENPEDAA 279
Query: 256 KALKNTEKYEIDGKNLECSLAKPEADQ 282
+A++ + D K A+ ++++
Sbjct: 280 RAVEALNGKKFDDKEWYVGKAQKKSER 306
Score = 78.6 bits (192), Expect = 5e-15
Identities = 72/312 (23%), Positives = 128/312 (40%), Gaps = 32/312 (10%)
Query: 28 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEEL 87
+++ + +V + L G + ++ G+ +GY FV F T++ A AIE+L
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVA-TDHMGQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 88 NNSEFKGKKIKCSSSQAKHR------------LFIGNIPKKWTVEDMKKVVADVGPGVIS 135
N K+I K +++ N+ + T +++K G + S
Sbjct: 195 NGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYG-SISS 253
Query: 136 IELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNF------------KLENNAPTV 183
+++D G++R F F+ + N A + + ++ F K E
Sbjct: 254 AVVMRD--GDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELS 311
Query: 184 SWAEPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRF 243
E +S+ +YVKNL + +T + L++LF G IT + SG K
Sbjct: 312 RRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGS- 370
Query: 244 GFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRS--SGTSNSQKPVVLPTYPH 301
GFV FS S A + L + GK L +LA+ + ++R+ + +P +P
Sbjct: 371 GFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKLQAQFSQMRPAFIPGVGP 430
Query: 302 RLGYGMVGGAYG 313
R+ GGA G
Sbjct: 431 RMPI-FTGGAPG 441
Score = 36.2 bits (82), Expect = 0.029
Identities = 20/89 (22%), Positives = 42/89 (46%)
Query: 201 AVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKN 260
++YV +L N+T L F ++ V + + +G+V++S+ A KA++
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 261 TEKYEIDGKNLECSLAKPEADQRSSGTSN 289
++GK + + + ++ R SG N
Sbjct: 107 LNYSYLNGKMIRITYSSRDSSARRSGVGN 135
>At1g49760 Putative Poly-A Binding Protein (F14J22.3)
Length = 671
Score = 82.4 bits (202), Expect = 4e-16
Identities = 67/271 (24%), Positives = 127/271 (46%), Gaps = 18/271 (6%)
Query: 25 SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 84
++ +Y+G + V++ L G+V VR+ + + GY +V + T + AS+A+
Sbjct: 44 TTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRAL 103
Query: 85 EELNNSEFKGKKIKCSSS--------QAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISI 136
ELN G+ I+ S +FI N+ K + + + + GP ++S
Sbjct: 104 NELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGP-ILSC 162
Query: 137 ELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNS--NFKLENNAPTVSWAEPRNSESS 194
++ D SG+++G+ F++Y A+ + K++ N K P V + + S
Sbjct: 163 KVAVD--PSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVH--KLQRDPSG 218
Query: 195 AVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSR-FGFVHFSDRSS 253
+ VYVKNL E+++ + L K+F G T V+ + G+ KS+ FGFV+F +
Sbjct: 219 EKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVI--MRDGEGKSKGFGFVNFENSDD 276
Query: 254 AMKALKNTEKYEIDGKNLECSLAKPEADQRS 284
A +A+ D K A+ ++++ +
Sbjct: 277 AARAVDALNGKTFDDKEWFVGKAQKKSERET 307
Score = 79.7 bits (195), Expect = 2e-15
Identities = 72/296 (24%), Positives = 127/296 (42%), Gaps = 31/296 (10%)
Query: 28 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEEL 87
++I + ++ + L + G + ++ SG+ KGY FV + T E A AI++L
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVA-VDPSGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 88 NNSEFKGKKIKC-----------SSSQAKH-RLFIGNIPKKWTVEDMKKVVADVGPGVIS 135
N K++ S + K +++ N+ + + E++ KV + G S
Sbjct: 194 NGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGV-TTS 252
Query: 136 IELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNF------------KLENNAPTV 183
+++D G+++GF F+ + N A + ++ F K E
Sbjct: 253 CVIMRD--GEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELK 310
Query: 184 SWAEPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRF 243
E E++ SQ +YVKNL E++T D L++ F G IT + SG +
Sbjct: 311 QKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGS- 369
Query: 244 GFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQ--RSSGTSNSQKPVVLP 297
GFV FS A +A+ I K L +LA+ + D+ R + +PV +P
Sbjct: 370 GFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQMRPVNMP 425
>At2g36660 putative poly(A) binding protein
Length = 609
Score = 82.0 bits (201), Expect = 5e-16
Identities = 64/278 (23%), Positives = 129/278 (46%), Gaps = 27/278 (9%)
Query: 28 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEEL 87
V++ + +V+ L+ + G + ++ E G+ +GY FV F+ ++ A AI+ L
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATL-EDGKSRGYGFVQFEQEDAAHAAIQTL 172
Query: 88 NNS----------EFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIE 137
N++ +F K + + L++ N+ + + +++ A+ G ++S+
Sbjct: 173 NSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGK-IVSLA 231
Query: 138 LLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNF------------KLENNAPTVSW 185
+ KD + RG+AF+ + N A + + ++ + F K E
Sbjct: 232 IAKD--ENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQ 289
Query: 186 AEPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGF 245
+ ++ E +++V +YVKN+ +T++ L+K F G IT L + G+ K FGF
Sbjct: 290 FKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKG-FGF 348
Query: 246 VHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQR 283
V FS A+ A+K GK L ++A+ + D++
Sbjct: 349 VCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRK 386
Score = 69.7 bits (169), Expect = 2e-12
Identities = 63/272 (23%), Positives = 123/272 (45%), Gaps = 22/272 (8%)
Query: 23 PHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQ 82
P ++ +Y+G + +V+E L ++ VR+ K SG Y + F +++ A+
Sbjct: 21 PVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANL 80
Query: 83 AIEELNNSEFKGKKIKCSSS--------QAKHRLFIGNIPKKWT---VEDMKKVVADVGP 131
AIE+ NNS GK I+ S +F+ N+P+ T ++DM K ++
Sbjct: 81 AIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVS 140
Query: 132 GVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEPRNS 191
+ L+D G++RG+ F+++ A + Q + NS + + + +
Sbjct: 141 --CKVATLED----GKSRGYGFVQFEQEDAAHAAIQTL-NSTIVADKEIYVGKFMK-KTD 192
Query: 192 ESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSR-FGFVHFSD 250
+ +Y+KNL ++++D L++ F GKI + + AK R + FV+F +
Sbjct: 193 RVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAI--AKDENRLCRGYAFVNFDN 250
Query: 251 RSSAMKALKNTEKYEIDGKNLECSLAKPEADQ 282
A +A + + K L A+ +A++
Sbjct: 251 PEDARRAAETVNGTKFGSKCLYVGRAQKKAER 282
Score = 50.1 bits (118), Expect = 2e-06
Identities = 29/94 (30%), Positives = 49/94 (51%), Gaps = 2/94 (2%)
Query: 12 KKKHAELLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAF 71
K+KH E + S+ +Y+ + V+EE+LR G ++ ++M E G+ KG+ F
Sbjct: 291 KEKHEEQKMIAKVSN-IYVKNVNVAVTEEELRKHFSQCGTITSTKLM-CDEKGKSKGFGF 348
Query: 72 VAFKTKELASQAIEELNNSEFKGKKIKCSSSQAK 105
V F T E A A++ + F GK + + +Q K
Sbjct: 349 VCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKK 382
Score = 35.4 bits (80), Expect = 0.050
Identities = 24/104 (23%), Positives = 43/104 (41%)
Query: 186 AEPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGF 245
A +S S+ ++YV +L ++T+ L F +T V L S +G+
Sbjct: 10 AADASSSGSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGY 69
Query: 246 VHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRSSGTSN 289
+F R A A++ ++GK + + D R +G N
Sbjct: 70 ANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGN 113
>At1g11650 putative DNA binding protein
Length = 405
Score = 78.6 bits (192), Expect = 5e-15
Identities = 71/323 (21%), Positives = 136/323 (41%), Gaps = 43/323 (13%)
Query: 28 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEEL 87
++IG + + E L GE+ ++++ K++G+ +GY F+ F + A + ++
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 88 NNSE--------FKGKKIKCSSSQAK-----HRLFIGNIPKKWTVEDMKKVVADVGPGVI 134
NN+ F+ SS + + +F+G++ T + + P V
Sbjct: 124 NNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVK 183
Query: 135 SIELLKDLQSSGRNRGFAFIEYYN-----HACAEYSRQKMSNSNFKLENNAPTVSWAEPR 189
+++ D + +GR +G+ F+ + + A E + S ++ A R
Sbjct: 184 GAKVVID-RVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQR 242
Query: 190 NSESSAVSQV--------KAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKS 241
+S S+ + V V+V L ++T D LK +F +G+I V +P K
Sbjct: 243 DSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGK------ 296
Query: 242 RFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRSS----------GTSNSQ 291
R GFV FS++S A +AL+ ++ G + S + ++++S G Q
Sbjct: 297 RCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSPSNKQSGDPSQFYYGGYGQGQEQ 356
Query: 292 KPVVLPTYPHRLGYGMVGGAYGG 314
+P P+ G GG Y G
Sbjct: 357 YGYTMPQDPNAYYGGYSGGGYSG 379
Score = 42.0 bits (97), Expect = 5e-04
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 23 PHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQ 82
P+++ V++GG+ +V+++ L+ GE+ V+I K G FV F K A +
Sbjct: 258 PNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG------FVQFSEKSCAEE 311
Query: 83 AIEELNNSEFKGKKIKCS 100
A+ LN + G ++ S
Sbjct: 312 ALRMLNGVQLGGTTVRLS 329
Score = 29.3 bits (64), Expect = 3.6
Identities = 13/74 (17%), Positives = 37/74 (49%)
Query: 186 AEPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGF 245
A P + + + +++ +++ +L + ++ L F H G++ + K + +GF
Sbjct: 48 AAPPSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGF 107
Query: 246 VHFSDRSSAMKALK 259
+ F+ ++A + L+
Sbjct: 108 IEFASHAAAERVLQ 121
>At5g54900 unknown protein
Length = 387
Score = 77.8 bits (190), Expect = 9e-15
Identities = 71/313 (22%), Positives = 136/313 (42%), Gaps = 43/313 (13%)
Query: 42 LRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEELNNSEFKG--KKIKC 99
+ VF QS GE + ++++ K +G+ +GY F+ F + +A + ++ N + + +
Sbjct: 77 MSVFAQS-GEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRL 135
Query: 100 SSSQA------------KHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGR 147
+ +QA H +F+G++ + T + +V V +++ D +++GR
Sbjct: 136 NWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLD-RTTGR 194
Query: 148 NRGFAFIEYYN-----HACAEYSRQKMSNSNFKL----ENNAPTVSWAEPRNSESSAVS- 197
++G+ F+ + + A E + Q S ++ NA + A +N++ +
Sbjct: 195 SKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGD 254
Query: 198 ---QVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSA 254
++V L N+T D LK +F G++ V +PP K R GFV +++++SA
Sbjct: 255 NDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGK------RCGFVQYANKASA 308
Query: 255 MKALKNTEKYEIDGKNLECSLAKPEADQRSSGTSNSQKPVVLPTYPHRLGYGMVG----- 309
AL ++ G+++ S + Q N P P GYG
Sbjct: 309 EHALSVLNGTQLGGQSIRLSWGRSPNKQSDQAQWNGGGYYGYPPQPQG-GYGYAAQPPTQ 367
Query: 310 --GAYGGIGAGYG 320
AY G GYG
Sbjct: 368 DPNAYYGGYTGYG 380
Score = 44.3 bits (103), Expect = 1e-04
Identities = 22/85 (25%), Positives = 46/85 (53%), Gaps = 6/85 (7%)
Query: 23 PHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQ 82
P+++ +++GG+ NV++++L+ GE+ V+I K G FV + K A
Sbjct: 257 PNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCG------FVQYANKASAEH 310
Query: 83 AIEELNNSEFKGKKIKCSSSQAKHR 107
A+ LN ++ G+ I+ S ++ ++
Sbjct: 311 ALSVLNGTQLGGQSIRLSWGRSPNK 335
>At4g27000 putative DNA binding protein
Length = 415
Score = 77.0 bits (188), Expect = 2e-14
Identities = 69/323 (21%), Positives = 138/323 (42%), Gaps = 46/323 (14%)
Query: 28 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEEL 87
++IG + + E L GE + ++++ K++G +GY F+ F A + ++
Sbjct: 82 LWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTY 141
Query: 88 NNSEFK-------------GKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVI 134
N + G + + +H +F+G++ T + + V V
Sbjct: 142 NGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVK 201
Query: 135 SIELLKDLQSSGRNRGFAFIEYYN-----HACAEYSRQKMSNSNFK---LENNAP----T 182
+++ D +++GR++G+ F+ + + A E + Q S+ + N P
Sbjct: 202 GAKVVND-RTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQP 260
Query: 183 VSWAEPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSR 242
S+ + + + ++V + +++T+D LK +F G++ V +P K R
Sbjct: 261 ASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGK------R 314
Query: 243 FGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRSSGTSNSQKPVVLPTYPHR 302
GFV +++R+ A +AL ++ G+++ S + SN Q T P +
Sbjct: 315 CGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGR--------SPSNKQ------TQPDQ 360
Query: 303 LGYGMVGGAYGGIGAGYGAAGFA 325
YG GG YG GY A G+A
Sbjct: 361 AQYGGGGGYYGYPPQGYEAYGYA 383
Score = 43.1 bits (100), Expect = 2e-04
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 23 PHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQ 82
P ++ +++G + +V+E+DL+ GE+ V+I K G FV + + A Q
Sbjct: 275 PTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCG------FVQYANRACAEQ 328
Query: 83 AIEELNNSEFKGKKIKCS 100
A+ LN ++ G+ I+ S
Sbjct: 329 ALSVLNGTQLGGQSIRLS 346
>At1g22760 putative polyA-binding protein, PAB3
Length = 660
Score = 75.1 bits (183), Expect = 6e-14
Identities = 68/254 (26%), Positives = 119/254 (46%), Gaps = 42/254 (16%)
Query: 63 SGERKGYAFVAFKTKELASQAIEELNNSEFKGKKIKCSS---SQAKHR-----------L 108
+G KGY FV F+ +E A AI++LN K++ Q + R +
Sbjct: 172 TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNV 231
Query: 109 FIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQK 168
++ N+PK+ ++++K G + S +++D SG +R F F+ N C E +
Sbjct: 232 YVKNLPKEIGEDELRKTFGKFGV-ISSAVVMRD--QSGNSRCFGFV---NFECTEAAASA 285
Query: 169 MSNSN-FKLENNAPTVSWAEPRNSESSAV--------------SQVKAVYVKNLPENITQ 213
+ N L ++ V A+ ++ + SQ +Y+KNL +++
Sbjct: 286 VEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDD 345
Query: 214 DSLKKLFEHHGKIT--KVVLPPAKSGQEKSR-FGFVHFSDRSSAMKALKNTEKYEIDGKN 270
+ LK++F +G +T KV+L P Q SR FGFV +S+ A++AL I K
Sbjct: 346 EKLKEMFSEYGNVTSSKVMLNP----QGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKP 401
Query: 271 LECSLAKPEADQRS 284
L +LA+ + D+R+
Sbjct: 402 LYIALAQRKEDRRA 415
Score = 75.1 bits (183), Expect = 6e-14
Identities = 62/245 (25%), Positives = 115/245 (46%), Gaps = 15/245 (6%)
Query: 25 SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 84
+S +Y G + V+E L + V V VR+ + ++ GYA++ F A +A+
Sbjct: 48 NSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCR-DQNRRSLGYAYINFSNPNDAYRAM 106
Query: 85 EELNNSEFKGKKIKCSSSQ--------AKHRLFIGNIPKKWTVEDMKKVVADVGPGVISI 136
E LN + + I+ S K +FI N+ + + + + G ++S
Sbjct: 107 EALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGT-ILSC 165
Query: 137 ELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNS--NFKLENNAPTVSWAEPRNSESS 194
++ D+ +GR++G+ F+++ A+ + K++ N K + E E++
Sbjct: 166 KVAMDV--TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENT 223
Query: 195 AVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSA 254
+ VYVKNLP+ I +D L+K F G I+ V+ +SG + FGFV+F +A
Sbjct: 224 PTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRC-FGFVNFECTEAA 282
Query: 255 MKALK 259
A++
Sbjct: 283 ASAVE 287
Score = 50.4 bits (119), Expect = 2e-06
Identities = 41/183 (22%), Positives = 79/183 (42%), Gaps = 31/183 (16%)
Query: 23 PHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQ 82
P + VY+ + + E++LR G +S +M+ +SG + + FV F+ E A+
Sbjct: 226 PRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMR-DQSGNSRCFGFVNFECTEAAAS 284
Query: 83 AIEELN------------------------NSEFKGKKIKCSSSQAKHRLFIGNIPKKWT 118
A+E++N +F+ ++I L++ N+
Sbjct: 285 AVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVD 344
Query: 119 VEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLEN 178
E +K++ ++ G V S +++ L G +RGF F+ Y N E + + +S N K+
Sbjct: 345 DEKLKEMFSEYG-NVTSSKVM--LNPQGMSRGFGFVAYSN---PEEALRALSEMNGKMIG 398
Query: 179 NAP 181
P
Sbjct: 399 RKP 401
>At2g44710 putative heterogeneous nuclear ribonucleoprotein
Length = 300
Score = 71.2 bits (173), Expect = 8e-13
Identities = 53/182 (29%), Positives = 94/182 (51%), Gaps = 21/182 (11%)
Query: 9 EVEKKKHAELL--ALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGER 66
+VE+++H ++L E+++G + SEEDL+ VGEV+EVRI+K ++ +
Sbjct: 110 DVEEEEHHDVLHERRKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKS 169
Query: 67 KGYAFVAFKTKELASQAIEELNNSE--FKGKKIKCSSS--------------QAKHRLFI 110
KG AF+ F T E A +A++EL N+E G+ I + S Q K +FI
Sbjct: 170 KGSAFLRFATVEQAKRAVKELKNTELLIVGESIISNLSILLIVISFMIFLVLQVK-TIFI 228
Query: 111 GNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMS 170
+ W E ++ ++ G + +EL +++ S+ R + F F+ + H A + ++
Sbjct: 229 DGLLPSWNEERVRDLLKPYGK-LEKVELARNMPSA-RRKDFGFVTFDTHEAAVSCAKFIN 286
Query: 171 NS 172
NS
Sbjct: 287 NS 288
Score = 53.5 bits (127), Expect = 2e-07
Identities = 53/239 (22%), Positives = 107/239 (44%), Gaps = 16/239 (6%)
Query: 39 EEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEELNNSEFKGKKIK 98
EE+ F +G+ +E + +A K E EE ++ + +K K
Sbjct: 72 EEEAGEFADEIGDGAE----DLDSEDDDDDHAIEEVKHGETVDVEEEEHHDVLHERRKRK 127
Query: 99 CSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYN 158
+ +F+G++ K + ED+KKV VG V + +LK+ Q+ +++G AF+ +
Sbjct: 128 ------EFEIFVGSLDKGASEEDLKKVFGHVGE-VTEVRILKNPQTK-KSKGSAFLRFAT 179
Query: 159 HACAEYSRQKMSNSNFKLENNAPTVSWAEPRNSESSA---VSQVKAVYVKNLPENITQDS 215
A+ + +++ N+ + + + + S V QVK +++ L + ++
Sbjct: 180 VEQAKRAVKELKNTELLIVGESIISNLSILLIVISFMIFLVLQVKTIFIDGLLPSWNEER 239
Query: 216 LKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEI-DGKNLEC 273
++ L + +GK+ KV L + FGFV F +A+ K E+ +G++ C
Sbjct: 240 VRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEAAVSCAKFINNSELGEGEDKVC 298
>At5g19350 DNA binding protein ACBF - like
Length = 425
Score = 68.6 bits (166), Expect = 5e-12
Identities = 62/290 (21%), Positives = 123/290 (42%), Gaps = 47/290 (16%)
Query: 28 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEEL 87
++IG + V E L GE+ V++++ K +G+ +GY F+ F + A + ++
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 88 NNSEFKGKKIKCSSSQAK------------HRLFIGNIPKKWTVEDMKKVVADVGPGVIS 135
N ++ G ++ + A H +F+G++ T +++ V
Sbjct: 86 NGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRG 145
Query: 136 IELLKDLQSSGRNRGFAFIEY-----YNHACAEYSRQKMSNSNFKLENNAP--------- 181
+++ D S+GR++G+ F+++ N A AE + S ++ P
Sbjct: 146 AKVVTD-PSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQQ 204
Query: 182 -TVSWAEPRNSESSAVSQVKA-------------VYVKNLPENITQDSLKKLFEHHGKIT 227
P S+ + V+A + V NL +N+T++ LKK F G++
Sbjct: 205 YVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVI 264
Query: 228 KVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAK 277
V +P K +G+V F R SA +A++ + I + + S +K
Sbjct: 265 YVKIPATKG------YGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSK 308
>At3g07810 putative RNA-binding protein
Length = 494
Score = 68.6 bits (166), Expect = 5e-12
Identities = 70/248 (28%), Positives = 108/248 (43%), Gaps = 31/248 (12%)
Query: 107 RLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSR 166
+LFIG I E +K+ + G VI +LKD +++GR RGF F+ + + A AE
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGE-VIEAVILKD-RTTGRARGFGFVVFADPAVAEIVI 64
Query: 167 QKMSNSNFKL---ENNAPTVSWAEPRNSESSAVS-------QVKAVYVKNLPENITQDSL 216
+ N + +L + P S SS++ + + ++V LP ++T+
Sbjct: 65 TEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDF 124
Query: 217 KKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLA 276
K FE G T VV+ + Q FGF+ + + K L T +E++GK +E A
Sbjct: 125 KTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT-FHELNGKMVEVKRA 183
Query: 277 KPEADQRSSGTSNSQKPVVLPTYPHRL-----GY--GMVGGAYGGIG---------AGYG 320
P+ + S G S S +R+ GY G A GG G G G
Sbjct: 184 VPK--ELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSPVGAG 241
Query: 321 AAGFAQVS 328
+GFA S
Sbjct: 242 RSGFANYS 249
Score = 56.2 bits (134), Expect = 3e-08
Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 24/161 (14%)
Query: 25 SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 84
+ +++IGGI+ + +EE L+ + S GEV E I+K + +G +G+ FV F +A I
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVI 64
Query: 85 EELNNSE---FKGKK---------IKCSSSQA----------KHRLFIGNIPKKWTVEDM 122
E +N + + KK + S+S + ++F+G +P T D
Sbjct: 65 TEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDF 124
Query: 123 KKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAE 163
K G + ++ D ++ R RGF FI Y + E
Sbjct: 125 KTYFEQFGT-TTDVVVMYD-HNTQRPRGFGFITYDSEEAVE 163
Score = 40.4 bits (93), Expect = 0.002
Identities = 16/84 (19%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 22 PPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELAS 81
P + ++++GG+ ++V+E D + + + G ++V +M + +G+ F+ + ++E
Sbjct: 104 PGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVE 163
Query: 82 QAIEELNNSEFKGKKIKCSSSQAK 105
+ + + + E GK ++ + K
Sbjct: 164 KVLLKTFH-ELNGKMVEVKRAVPK 186
>At5g50250 RNA-binding protein-like
Length = 289
Score = 67.8 bits (164), Expect = 9e-12
Identities = 43/184 (23%), Positives = 92/184 (49%), Gaps = 22/184 (11%)
Query: 22 PPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELAS 81
PP +++++G + +V + L + + G V ++ +++ + +G+ FV T E A
Sbjct: 109 PPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAE 168
Query: 82 QAIEELNNSEFKGKKIKCSSS--------------QAKHRLFIGNIPKKWTVED--MKKV 125
+A+E+ N+ E G+++ + + A R+++GN+P W V+ ++++
Sbjct: 169 KAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLP--WDVDSGRLERL 226
Query: 126 VADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSW 185
++ G V+ ++ D + +GR+RGF F++ N + + N LE A V+
Sbjct: 227 FSEHGK-VVDARVVSD-RETGRSRGFGFVQMSNENEVNVAIAALDGQN--LEGRAIKVNV 282
Query: 186 AEPR 189
AE R
Sbjct: 283 AEER 286
Score = 62.0 bits (149), Expect = 5e-10
Identities = 44/176 (25%), Positives = 88/176 (50%), Gaps = 10/176 (5%)
Query: 107 RLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSR 166
+LF+GN+P + V+ + G + I + + + ++RGF F+ AE +
Sbjct: 114 KLFVGNLP--YDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAV 171
Query: 167 QKMSNSNFKLENNAPTVSWAEPRNSESSAVSQVK----AVYVKNLPENITQDSLKKLFEH 222
+K ++ F++ TV+ A PR S +V +YV NLP ++ L++LF
Sbjct: 172 EKFNS--FEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSE 229
Query: 223 HGKITKV-VLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAK 277
HGK+ V+ ++G+ + FGFV S+ + A+ + ++G+ ++ ++A+
Sbjct: 230 HGKVVDARVVSDRETGRSRG-FGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAE 284
Score = 41.2 bits (95), Expect = 0.001
Identities = 22/81 (27%), Positives = 39/81 (47%)
Query: 202 VYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNT 261
++V NLP ++ +L LFE G + + + + FGFV S A KA++
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174
Query: 262 EKYEIDGKNLECSLAKPEADQ 282
+E++G+ L + A P +
Sbjct: 175 NSFEVNGRRLTVNRAAPRGSR 195
Score = 40.8 bits (94), Expect = 0.001
Identities = 19/80 (23%), Positives = 40/80 (49%)
Query: 28 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEEL 87
+Y+G + +V L G+V + R++ +E+G +G+ FV + + AI L
Sbjct: 209 IYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAAL 268
Query: 88 NNSEFKGKKIKCSSSQAKHR 107
+ +G+ IK + ++ + R
Sbjct: 269 DGQNLEGRAIKVNVAEERTR 288
>At5g40490 ribonucleoprotein -like
Length = 423
Score = 67.4 bits (163), Expect = 1e-11
Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 11/239 (4%)
Query: 85 EELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQS 144
E++ + + K + + ++F+G + ++ T + K G S+ ++KD +
Sbjct: 21 EDIEDDDDKSQPHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSV-IMKD-RK 78
Query: 145 SGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEPRNSESSAVSQVKAVYV 204
+G+ RGF F+ Y + + + K+ N + + PR S SS + K ++V
Sbjct: 79 TGQPRGFGFVTYADSSVVD----KVIQDNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFV 134
Query: 205 KNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKY 264
+P ++ D K+ F G++ + + S FGFV + L +
Sbjct: 135 GGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRI 194
Query: 265 EIDGKNLECSLAKPEADQRSSGTSNSQKPVVLPTYPHRLGYGMVGGAYGGIGAGYGAAG 323
E+ G +E A+P+ + +S T+ S++ G G G GG G GYG G
Sbjct: 195 ELSGTQVEIKKAEPK--KPNSVTTPSKR---FGDSRSNFGGGYGDGYGGGHGGGYGGPG 248
Score = 60.5 bits (145), Expect = 1e-09
Identities = 39/172 (22%), Positives = 88/172 (50%), Gaps = 19/172 (11%)
Query: 25 SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 84
+ ++++GG+A + + GE+++ IMK +++G+ +G+ FV + + + I
Sbjct: 41 AGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVI 100
Query: 85 EELNNSEFKGKKIK---------CSSSQAK-HRLFIGNIPKKWTVEDMKKVVADVGPGVI 134
++ N GK+++ SS+ K ++F+G IP ++ K+ G +
Sbjct: 101 QD--NHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGE-LK 157
Query: 135 SIELLKDLQSSGRNRGFAFIEY-----YNHACAEYSRQKMSNSNFKLENNAP 181
++++D S+GR+RGF F+ Y +H A+ +R ++S + +++ P
Sbjct: 158 EHQIMRD-HSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEP 208
Score = 52.0 bits (123), Expect = 5e-07
Identities = 18/81 (22%), Positives = 48/81 (59%)
Query: 25 SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 84
+ ++++GGI ++V +++ + F GE+ E +IM+ +G +G+ FV ++++++ +
Sbjct: 129 TKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLL 188
Query: 85 EELNNSEFKGKKIKCSSSQAK 105
+ N E G +++ ++ K
Sbjct: 189 AKGNRIELSGTQVEIKKAEPK 209
>At1g60000 unknown protein
Length = 258
Score = 66.2 bits (160), Expect = 3e-11
Identities = 48/194 (24%), Positives = 93/194 (47%), Gaps = 18/194 (9%)
Query: 8 DEVEKKKHAELLALPPHS--SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGE 65
+E EK A + PP + +++Y G + NV L Q V ++ +++G+
Sbjct: 65 EEEEKDDGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQ 124
Query: 66 RKGYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSS------------QAKHRLFIGNI 113
+G+AFV E + I+ L+ +E+ G+ +K + + + +H+LF+GN+
Sbjct: 125 SRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNL 184
Query: 114 PKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSN 173
T E + + G V+ ++ D +GR+RG+ F+ Y + A E + + +
Sbjct: 185 SWTVTSESLAGAFRECG-DVVGARVVFD-GDTGRSRGYGFVCYSSKAEMETALESL--DG 240
Query: 174 FKLENNAPTVSWAE 187
F+LE A V+ A+
Sbjct: 241 FELEGRAIRVNLAQ 254
Score = 47.0 bits (110), Expect = 2e-05
Identities = 22/84 (26%), Positives = 45/84 (53%)
Query: 22 PPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELAS 81
P ++++G ++ V+ E L + G+V R++ ++G +GY FV + +K
Sbjct: 173 PETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEME 232
Query: 82 QAIEELNNSEFKGKKIKCSSSQAK 105
A+E L+ E +G+ I+ + +Q K
Sbjct: 233 TALESLDGFELEGRAIRVNLAQGK 256
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.316 0.132 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,462,844
Number of Sequences: 26719
Number of extensions: 360093
Number of successful extensions: 2557
Number of sequences better than 10.0: 234
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 1654
Number of HSP's gapped (non-prelim): 751
length of query: 370
length of database: 11,318,596
effective HSP length: 101
effective length of query: 269
effective length of database: 8,619,977
effective search space: 2318773813
effective search space used: 2318773813
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0010.2