BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0009.7
(1310 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g32110 non-LTR reverse transcriptase, putative 338 2e-92
At2g45230 putative non-LTR retroelement reverse transcriptase 336 5e-92
At2g31080 putative non-LTR retroelement reverse transcriptase 333 5e-91
At2g25550 putative non-LTR retroelement reverse transcriptase 312 7e-85
At2g31520 putative non-LTR retroelement reverse transcriptase 312 9e-85
At2g17910 putative non-LTR retroelement reverse transcriptase 303 3e-82
At1g31030 F17F8.5 301 2e-81
At1g47850 hypothetical protein 298 1e-80
At4g09710 RNA-directed DNA polymerase -like protein 298 2e-80
At3g45550 putative protein 296 5e-80
At1g47910 reverse transcriptase, putative 296 5e-80
At2g05200 putative non-LTR retroelement reverse transcriptase 293 4e-79
At2g05980 putative non-LTR retroelement reverse transcriptase 290 3e-78
At2g28980 putative non-LTR retroelement reverse transcriptase 287 2e-77
At1g25430 hypothetical protein 286 5e-77
At2g41580 putative non-LTR retroelement reverse transcriptase 285 1e-76
At2g23880 putative non-LTR retroelement reverse transcriptase 282 1e-75
At3g44650 putative protein 272 1e-72
At2g14430 putative non-LTR retroelement reverse transcriptase 268 2e-71
At3g25485 unknown protein 266 4e-71
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 338 bits (866), Expect = 2e-92
Identities = 263/916 (28%), Positives = 419/916 (45%), Gaps = 86/916 (9%)
Query: 413 DFFSSGRISRGMNAAFITLIPKKENASSLNHYRPISLIRSSYKLIAKVLATRLQKVMPKL 472
DFFSSG + N + LI K + +RPISL +K I KV+ RL+ V+ KL
Sbjct: 1013 DFFSSGSFPQETNDVLVVLIAKVLKPEKITQFRPISLCNVLFKTITKVMVGRLKGVINKL 1072
Query: 473 LSQNQFAFTKERQIADCILLANEVADFLSKKS--EGGLMLKVDLAKAYDQVDWEFLINML 530
+ Q +F R D I++ EV + +K +G ++LK+DL KAYD++ W+ L + L
Sbjct: 1073 IGPAQTSFIPGRLSTDNIVVVQEVVHSMRRKKGVKGWMLLKLDLEKAYDRIRWDLLEDTL 1132
Query: 531 HEMNFGDKWISWMKSCISSASLAILVNGSPTDFFSIEKGLRQGDPLSPLLFNLCLNGLSC 590
W+ W+ C+ S+ +L NG TD F +GLRQGDPLSP LF LC+ L
Sbjct: 1133 KAAGLPGTWVQWIMKCVEGPSMRLLWNGEKTDAFKPLRGLRQGDPLSPYLFVLCIERLCH 1192
Query: 591 LLNQFLGEENYCGVRISRN-LTINHLLFADDTLLFCENNELQLETLCNVLITFLFASGLK 649
L+ + + + ++IS++ ++H+ FADD +LF E + Q+ L VL F ASG K
Sbjct: 1193 LIESSIAAKKWKPIKISQSGPRLSHICFADDLILFAEASIDQIRVLRGVLEKFCGASGQK 1252
Query: 650 VNNQKSEL-IGCNVQTVEVERLAHSFGWSVGTLPISYLGAPLGGNPRRIVFWNPMLEKLK 708
V+ +KS++ NV +R++ G YLG P+ + ++++
Sbjct: 1253 VSLEKSKIYFSKNVLRDLGKRISEESGMKATKDLGKYLGVPILQKRINKETFGEVIKRFS 1312
Query: 709 CKTRSYNSKFMSLSGRLVITKSVLCSIPLFLMVVFKAPKGVILEVEKLFHAFIWGQEQGR 768
+ + + +S +GRL +TK+VL SI + M K P+ + ++K+ AF+WG +
Sbjct: 1313 SRLAGWKGRMLSFAGRLTLTKAVLTSILVHTMSTIKLPQSTLDGLDKVSRAFLWGSTLEK 1372
Query: 769 KKINWIGWDQICLNRKAGGLGLGFIEWRNRGLLLKWAWRFGREINSLWRFFVIERYNL-D 827
KK + + W ++CL R+ GGLG+ N+ L+ K WR + +SLW V +Y + D
Sbjct: 1373 KKQHLVAWTRVCLPRREGGLGIRSATAMNKALIAKVGWRVLNDGSSLWAQVVRSKYKVGD 1432
Query: 828 PDSLIWHMA-----STTPAMGSRAIQDIWRVLNEDHSLSAGFKENLLISIGDGSRVKFWR 882
W +A ST ++G IWR E H + IGDG +++FW
Sbjct: 1433 VHDRNWTVAKSNWSSTWRSVGVGLRDVIWR---EQHWV-----------IGDGRQIRFWT 1478
Query: 883 DPWVSNVALCHLFPRLYAMSENKEARIAEVGTYSRGKW----GWSLTFRGQFFAWEEELY 938
D W+S + A +A++ +R W GW ++ F + L
Sbjct: 1479 DRWLSETPI--------ADDSIVPLSLAQMLCTARDLWRDGTGWDMSQIAPFVTDNKRL- 1529
Query: 939 QQFLASINHIIPAAVGGDQLIWCANQTGLFSVKELCYWLEDHLFTHQ--------MWQVP 990
LA I + A D+L W G F+VK L + Q +W+V
Sbjct: 1530 -DLLAVIVDSVTGA--HDRLAWGMTSDGRFTVKSAFAMLTNDDSPRQDMSSLYGRVWKVQ 1586
Query: 991 KSIAKLLPPKVALFFWQAQNDKIATRANLLARGIDLNGSTQCLFCNAFDESCNHIFLHCH 1050
P +V +F W N I T + R L S C C ES H+ C
Sbjct: 1587 ------APERVRVFLWLVVNQAIMTNSERKRR--HLCDSDVCQVCRGGIESILHVLRDCP 1638
Query: 1051 SIWSLWCVIVNRERFLWVMPASLADLILEWDF----LPKISDKSLWSLIPYALSWSIWIE 1106
++ +W IV R + + +LEW + +++ S WS + W W
Sbjct: 1639 AMSGIWDRIVPRR----LQQSFFTMSLLEWLYSNLRQGLMTEGSDWSTMFAMAVWWGWKW 1694
Query: 1107 R-NNICFNHKAL--NISEIWDFHL-LRIGWWTHELLRQNSYSIDQLSRNFESIRFASKPS 1162
R +NI +K + I D + + I + LR + +++ R
Sbjct: 1695 RCSNIFGENKTCRDRVRFIKDLAVEVSIAYSREVELRLSGLRVNKPIR------------ 1742
Query: 1163 LLRAASWVTPDAGLIKINVDGAAKGSPGRCGIGGILRNNANVILGFFSKSVGEGYAFEAE 1222
W P G KIN DGA++G+PG GG+LRN+A G F+ ++G A AE
Sbjct: 1743 ------WTPPMEGWYKINTDGASRGNPGLASAGGVLRNSAGAWCGGFAVNIGRCSAPLAE 1796
Query: 1223 VLAIHEALLFCVQRQLRNIIIESDSSLAVGWVNNRCNRPWKLLNKLNQIDRWLVETNCLK 1282
+ ++ L +QL ++ +E DS + VG++ L + +L + ++
Sbjct: 1797 LWGVYYGLYMAWAKQLTHLELEVDSEVVVGFLKTGIGETHPLSFLVRLCHNFLSKDWTVR 1856
Query: 1283 VNHIYREANGEADKLA 1298
++H+YREAN AD LA
Sbjct: 1857 ISHVYREANSLADGLA 1872
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 336 bits (862), Expect = 5e-92
Identities = 264/960 (27%), Positives = 426/960 (43%), Gaps = 81/960 (8%)
Query: 381 LNPLTAIKPQGLTALI*NSF-RNSGAWFEWMFEDFFSSGRISRGMNAAFITLIPKKENAS 439
+NP P G+ + F G M + FF SG I GMN I LIPK A
Sbjct: 440 INPHKCPGPDGMNGFLYQQFWETMGDQITEMVQAFFRSGSIEEGMNKTNICLIPKILKAE 499
Query: 440 SLNHYRPISLIRSSYKLIAKVLATRLQKVMPKLLSQNQFAFTKERQIADCILLANEVADF 499
+ +RPISL YK+I K++A RL+K++P L+S+ Q AF K R I+D IL+A+E+
Sbjct: 500 KMTDFRPISLCNVIYKVIGKLMANRLKKILPSLISETQAAFVKGRLISDNILIAHELLHA 559
Query: 500 LS---KKSEGGLMLKVDLAKAYDQVDWEFLINMLHEMNFGDKWISWMKSCISSASLAILV 556
LS K SE + +K D++KAYD+V+W FL + + F D WI + C+ S +L+
Sbjct: 560 LSSNNKCSEEFIAIKTDISKAYDRVEWPFLEKAMRGLGFADHWIRLIMECVKSVRYQVLI 619
Query: 557 NGSPTDFFSIEKGLRQGDPLSPLLFNLCLNGLSCLLNQFLGEENYCGVRISRNL-TINHL 615
NG+P +GLRQGDPLSP LF +C L +L + G++++R I+HL
Sbjct: 620 NGTPHGEIIPSRGLRQGDPLSPYLFVICTEMLVKMLQSAEQKNQITGLKVARGAPPISHL 679
Query: 616 LFADDTLLFCENNELQLETLCNVLITFLFASGLKVNNQKSEL-IGCNVQTVEVERLAHSF 674
LFADD++ +C+ N+ L + ++ + ASG +VN KS + G ++ +
Sbjct: 680 LFADDSMFYCKVNDEALGQIIRIIEEYSLASGQRVNYLKSSIYFGKHISEERRCLVKRKL 739
Query: 675 GWSVGTLPISYLGAPLGGNPRRIVFWNPMLEKLKCKTRSYNSKFMSLSGRLVITKSVLCS 734
G YLG P ++ + + ++L K + S F+S G+ ++ K+V +
Sbjct: 740 GIEREGGEGVYLGLPESFQGSKVATLSYLKDRLGKKVLGWQSNFLSPGGKEILLKAVAMA 799
Query: 735 IPLFLMVVFKAPKGVILEVEKLFHAFIWGQEQGRKKINWIGWDQICLNRKAGGLGLGFIE 794
+P + M FK PK + ++E + F W ++ + ++W W + + GGLG IE
Sbjct: 800 LPTYTMSCFKIPKTICQQIESVMAEFWWKNKKEGRGLHWKAWCHLSRPKAVGGLGFKEIE 859
Query: 795 WRNRGLLLKWAWRFGREINSLWRFFVIERYNLDPDSLIWHMASTTPAMGSRAIQDIWRVL 854
N LL K WR E +SL RY D L +GSR W+ +
Sbjct: 860 AFNIALLGKQLWRMITEKDSLMAKVFKSRYFSKSDPL-------NAPLGSRP-SFAWKSI 911
Query: 855 NEDHSLSAGFKENLLISIGDGSRVKFWRDPWV--------SNVALCHLFPRLYAMSENKE 906
E L K+ + IG+G + W DPW+ V HL + A N
Sbjct: 912 YEAQVL---IKQGIRAVIGNGETINVWTDPWIGAKPAKAAQAVKRSHLVSQYAA---NSI 965
Query: 907 ARIAEVGTYSRGKWGWSLTFRGQFFAWEEELYQQFLASINHIIPAAVGG----DQLIWCA 962
+ ++ W W+L + + + LA GG D+ W
Sbjct: 966 HVVKDLLLPDGRDWNWNLV----SLLFPDNTQENILA-------LRPGGKETRDRFTWEY 1014
Query: 963 NQTGLFSVKELCYWLEDHLFTHQ----------MWQVPKSIAKL-LPPKVALFFWQAQND 1011
+++G +SVK YW+ + + + + + I KL +PPK+ F W+ N+
Sbjct: 1015 SRSGHYSVKS-GYWVMTEIINQRNNPQEVLQPSLDPIFQQIWKLDVPPKIHHFLWRCVNN 1073
Query: 1012 KIATRANLLARGIDLNGSTQCLFCNAFDESCNHIFLHCHSIWSLWCV--IVNRERFLWV- 1068
++ +NL R L C+ C + E+ NH+ C W + + W
Sbjct: 1074 CLSVASNLAYR--HLAREKSCVRCPSHGETVNHLLFKCPFARLTWAISPLPAPPGGEWAE 1131
Query: 1069 -MPASLADLILEWDFLPKISDKSLWSLIPYALSWSIWIERNNICFNHKALNISEIWDFHL 1127
+ ++ ++ P+ SD +LIP+ L W +W RN++ F + ++
Sbjct: 1132 SLFRNMHHVLSVHKSQPEESDHH--ALIPWIL-WRLWKNRNDLVFKGREFTAPQV----- 1183
Query: 1128 LRIGWWTHELLRQNSYSIDQLSRNFESIRFASKPSLLRAASWVTPDAGLIKINVDGAAKG 1187
+ + + +D + E + + R W P G +K N DGA
Sbjct: 1184 ----------ILKATEDMDAWNNRKEPQPQVTSSTRDRCVKWQPPSHGWVKCNTDGAWSK 1233
Query: 1188 SPGRCGIGGILRNNANVILGFFSKSV-GEGYAFEAEVLAIHEALLFCVQRQLRNIIIESD 1246
G CG+G +LRN+ +L +++ + E EV A+ A+L + R +I ESD
Sbjct: 1234 DLGNCGVGWVLRNHTGRLLWLGLRALPSQQSVLETEVEALRWAVLSLSRFNYRRVIFESD 1293
Query: 1247 SSLAVGWVNNRCNRPWKLLNKLNQIDRWLVETNCLKVNHIYREANGEADKLAKRGAEYPN 1306
S V + N + P L ++ I L +K RE N AD+ A+ N
Sbjct: 1294 SQYLVSLIQNEMDIP-SLAPRIQDIRNLLRHFEEVKFQFTRREGNNVADRTARESLSLMN 1352
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 333 bits (853), Expect = 5e-91
Identities = 247/920 (26%), Positives = 415/920 (44%), Gaps = 84/920 (9%)
Query: 413 DFFSSGRISRGMNAAFITLIPKKENASSLNHYRPISLIRSSYKLIAKVLATRLQKVMPKL 472
+FF +G + N A + LI K + +RP+SL +K+I K++ TRL+ V+ KL
Sbjct: 337 EFFETGVLPASTNDALLVLIAKVAKPERIQQFRPVSLCNVLFKIITKMMVTRLKNVISKL 396
Query: 473 LSQNQFAFTKERQIADCILLANEVADFLSKKS--EGGLMLKVDLAKAYDQVDWEFLINML 530
+ Q +F R D I+L E + +K +G ++LK+DL KAYD+V W+FL L
Sbjct: 397 IGPAQASFIPGRLSIDNIVLVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRVRWDFLQETL 456
Query: 531 HEMNFGDKWISWMKSCISSASLAILVNGSPTDFFSIEKGLRQGDPLSPLLFNLCLNGLSC 590
+ W S + + ++ S+++L NG TD F +GLRQGDPLSP LF LCL L
Sbjct: 457 EAAGLSEGWTSRIMAGVTDPSMSVLWNGERTDSFVPARGLRQGDPLSPYLFVLCLERLCH 516
Query: 591 LLNQFLGEENYCGVRIS-RNLTINHLLFADDTLLFCENNELQLETLCNVLITFLFASGLK 649
L+ +G+ + + +S ++H+ FADD +LF E + Q+ + VL F ASG K
Sbjct: 517 LIEASVGKREWKPIAVSCGGSKLSHVCFADDLILFAEASVAQIRIIRRVLERFCEASGQK 576
Query: 650 VNNQKSELIGCNVQTVEVERLAHSFGWSVGTLPI-SYLGAPLGGNPRRIVFWNPMLEKLK 708
V+ +KS++ + + E+E+L T + YLG P+ + +LE++
Sbjct: 577 VSLEKSKIFFSHNVSREMEQLISEESGIGCTKELGKYLGMPILQKRMNKETFGEVLERVS 636
Query: 709 CKTRSYNSKFMSLSGRLVITKSVLCSIPLFLMVVFKAPKGVILEVEKLFHAFIWGQEQGR 768
+ + + +SL+GR+ +TK+VL SIP+ +M P + +++ F+WG +
Sbjct: 637 ARLAGWKGRSLSLAGRITLTKAVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWGSTMEK 696
Query: 769 KKINWIGWDQICLNRKAGGLGLGFIEWRNRGLLLKWAWRFGREINSLWRFFVIERYNLDP 828
KK + + W +IC + GG+GL N+ L+ K WR ++ SLW V ++Y
Sbjct: 697 KKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVVRKKYK--- 753
Query: 829 DSLIWHMASTTPAMGSRAIQDIWRVLNEDHSLSAGFKENLLISI----GDGSRVKFWRDP 884
+ + T+ WR S++ G +E ++ + GDG ++FW D
Sbjct: 754 ---VGGVQDTSWLKPQPRWSSTWR------SVAVGLREVVVKGVGWVPGDGCTIRFWLDR 804
Query: 885 WVSNVALCHLFPRLYAMSENKEARIAEVGTYSRGKWGWSLTFRGQFFAWEEELYQQFLAS 944
W+ L L + E RI Y GW+L G + E ++ L S
Sbjct: 805 WLLQEPLVELGTDMIPEGE----RIKVAADYWLPGSGWNLEILGLYL---PETVKRRLLS 857
Query: 945 INHIIPAAVG-GDQLIWCANQTGLFSVKELCYWLEDHL--------FTHQMWQVPKSIAK 995
+ ++ +G GD++ W Q G F+V+ L+ + F +++W++
Sbjct: 858 V--VVQVFLGNGDEISWKGTQDGAFTVRSAYSLLQGDVGDRPNMGSFFNRIWKL------ 909
Query: 996 LLPPKVALFFWQAQNDKIATRANLLARGIDLNGSTQCLFCNAFDESCNHIFLHCHSIWSL 1055
+ P +V +F W + I T + R + N C CN +E+ H+ C ++ +
Sbjct: 910 ITPERVRVFIWLVSQNVIMTNVERVRRHLSENAI--CSVCNGAEETILHVLRDCPAMEPI 967
Query: 1056 WCVIVNRERFLWVMPASLADLILEWDFLPKISDKSLWSLIPYALSWSIWIERNNICFNHK 1115
W ++ R SL LEW F K +W + W W R F +
Sbjct: 968 WRRLLPLRRHHEFFSQSL----LEWLFTNMDPVKGIWPTLFGMGIWWAWKWRCCDVFGER 1023
Query: 1116 AL----------NISEIWDFHLLRIGWWTHELLRQNSYSIDQLSRNFESIRFASKPSLLR 1165
+ E+ H+ +G R N ++++ R
Sbjct: 1024 KICRDRLKFIKDMAEEVRRVHVGAVG------NRPNGVRVERMIR--------------- 1062
Query: 1166 AASWVTPDAGLIKINVDGAAKGSPGRCGIGGILRNNANVILGFFSKSVGEGYAFEAEVLA 1225
W P G +KI DGA++G+ G GG +RN LG F+ ++G A AE+
Sbjct: 1063 ---WQVPSDGWVKITTDGASRGNHGLAAAGGAIRNGQGEWLGGFALNIGSCAAPLAELWG 1119
Query: 1226 IHEALLFCVQRQLRNIIIESDSSLAVGWVNNRCNRPWKLLNKLNQIDRWLVETNCLKVNH 1285
+ LL + R + ++ D L VG+++ + L + + ++V+H
Sbjct: 1120 AYYGLLIAWDKGFRRVELDLDCKLVVGFLSTGVSNAHPLSFLVRLCQGFFTRDWLVRVSH 1179
Query: 1286 IYREANGEADKLAKRGAEYP 1305
+YREAN AD LA P
Sbjct: 1180 VYREANRLADGLANYAFTLP 1199
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 312 bits (800), Expect = 7e-85
Identities = 251/923 (27%), Positives = 417/923 (44%), Gaps = 83/923 (8%)
Query: 414 FFSSGRISRGMNAAFITLIPKKENASSLNHYRPISLIRSSYKLIAKVLATRLQKVMPKLL 473
FF + + +N I +IPK N ++L+ YRPI+L YK+I+K L RL+ + ++
Sbjct: 856 FFETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIV 915
Query: 474 SQNQFAFTKERQIADCILLANEVADFLSKK---SEGGLMLKVDLAKAYDQVDWEFLINML 530
S +Q AF R I D +++A+EV L + S+ + +K D++KAYD+V+W+FL +
Sbjct: 916 SDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTM 975
Query: 531 HEMNFGDKWISWMKSCISSASLAILVNGSPTDFFSIEKGLRQGDPLSPLLFNLCLNGLSC 590
F +KWI W+ + + S ++L+NGSP + + +G+RQGDPLSP LF LC + LS
Sbjct: 976 RLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSH 1035
Query: 591 LLNQFLGEENYCGVRISRNL-TINHLLFADDTLLFCENNELQLETLCNVLITFLFASGLK 649
L+N + GVRI I HL FADD+L FC+ N + L +V + + SG K
Sbjct: 1036 LINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQK 1095
Query: 650 VNNQKSEL-IGCNVQTVEVERLAHSFGWSVGTLPISYLGAPLGGNPRRIVFWNPMLEKLK 708
+N QKS + G V RL YLG P ++ + +++++K
Sbjct: 1096 INVQKSMITFGSRVYGSTQSRLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVK 1155
Query: 709 CKTRSYNSKFMSLSGRLVITKSVLCSIPLFLMVVFKAPKGVILEVEKLFHAFIWGQEQGR 768
+T +++++F+S +G+ ++ KSV ++P++ M FK PKG++ E+E L F W + +
Sbjct: 1156 KRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQ 1215
Query: 769 KKINWIGWDQICLNRKAGGLGLGFIEWRNRGLLLKWAWRFGREINSLWRFFVIERYNLDP 828
+ I W+ W ++ ++K GGLG + N LL K AWR + NSL+ + RY D
Sbjct: 1216 RGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKD- 1274
Query: 829 DSLIWHMASTTPAMGSRAIQDIWRVLNEDHSLSAGFKENLLISIGDGSRVKFWRDPWVSN 888
S A + W L + +L K+ IGDG ++ D N
Sbjct: 1275 -------VSILDAKVRKQQSYGWASLLDGIAL---LKKGTRHLIGDGQNIRIGLD----N 1320
Query: 889 VALCHLFPRLYAMSENKEARIAEVGTYSRGKWGWSLTFRGQFFAWEEELYQQFLASINH- 947
+ H L KE I + + R +G ++ W++ QF+ +H
Sbjct: 1321 IVDSHPPRPLNTEETYKEMTINNL--FER---------KGSYYFWDDSKISQFVDQSDHG 1369
Query: 948 -----IIPAAVGGDQLIWCANQTGLFSVKELCYWLEDH----------------LFTHQM 986
+ + D++IW N TG ++V+ YWL H ++
Sbjct: 1370 FIHRIYLAKSKKPDKIIWNYNTTGEYTVRS-GYWLLTHDPSTNIPAINPPHGSIDLKTRI 1428
Query: 987 WQVPKSIAKLLPPKVALFFWQAQNDKIATRANLLARGIDLNGSTQCLFCNAFDESCNHIF 1046
W +P + PK+ F W+A + +AT L RG+ ++ S C C+ +ES NH
Sbjct: 1429 WNLP------IMPKLKHFLWRALSQALATTERLTTRGMRIDPS--CPRCHRENESINHAL 1480
Query: 1047 LHCHSIWSLWCV----IVNRERFLWVMPASLADLILEWDFLPKISDKSLWSLIPYALSWS 1102
C W + ++ + ++++++ +F+ + L+P L W
Sbjct: 1481 FTCPFATMAWRLSDSSLIRNQLMSNDFEENISNIL---NFVQDTTMSDFHKLLPVWLIWR 1537
Query: 1103 IWIERNNICFNHKALNISEIWDFHLLRIGWWTHELLRQNSYSIDQLSRNFESIRFASKPS 1162
IW RNN+ FN + S+ +L TH+ L +++ + ++
Sbjct: 1538 IWKARNNVVFNKFRESPSKT----VLSAKAETHDWL--------NATQSHKKTPSPTRQI 1585
Query: 1163 LLRAASWVTPDAGLIKINVDGAAKGSPGRCGIGGILRNNANVILGFFS-KSVGEGYAFEA 1221
W P A +K N D G I+RN+ + + S K EA
Sbjct: 1586 AENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEA 1645
Query: 1222 EVLAIHEALLFCVQRQLRNIIIESDSSLAVGWVNNRCNRPWKLLNKLNQIDRWLVETNCL 1281
E A+ AL R + +E D + +N + L N L I W + +
Sbjct: 1646 ETKALLAALQQTWIRGYTQVFMEGDCQTLINLING-ISFHSSLANHLEDISFWANKFASI 1704
Query: 1282 KVNHIYREANGEADKLAKRGAEY 1304
+ I ++ N A LAK G Y
Sbjct: 1705 QFGFIRKKGNKLAHVLAKYGCTY 1727
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 312 bits (799), Expect = 9e-85
Identities = 256/930 (27%), Positives = 415/930 (44%), Gaps = 97/930 (10%)
Query: 414 FFSSGRISRGMNAAFITLIPKKENASSLNHYRPISLIRSSYKLIAKVLATRLQKVMPKLL 473
FF + + +N I +IPK N ++L+ YRPI+L YK+I+K L RL+ + ++
Sbjct: 630 FFETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIV 689
Query: 474 SQNQFAFTKERQIADCILLANEVADFLSKK---SEGGLMLKVDLAKAYDQVDWEFLINML 530
S +Q AF R I D +++A+EV L + S+ + +K D++KAYD+V+W+FL +
Sbjct: 690 SDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTM 749
Query: 531 HEMNFGDKWISWMKSCISSASLAILVNGSPTDFFSIEKGLRQGDPLSPLLFNLCLNGLSC 590
F +KWI W+ + + S ++L+NGSP + + +G+RQGDPLSP LF LC + LS
Sbjct: 750 RLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSH 809
Query: 591 LLNQFLGEENYCGVRISRNL-TINHLLFADDTLLFCENNELQLETLCNVLITFLFASGLK 649
L+N + GVRI I HL FADD+L FC+ N + L +V + + SG K
Sbjct: 810 LINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQK 869
Query: 650 VNNQKSEL-IGCNVQTVEVERLAHSFGWSVGTLPISYLGAPLGGNPRRIVFWNPMLEKLK 708
+N QKS + G V +L YLG P ++ + +++++K
Sbjct: 870 INVQKSMITFGSRVYGSTQSKLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVK 929
Query: 709 CKTRSYNSKFMSLSGRLVITKSVLCSIPLFLMVVFKAPKGVILEVEKLFHAFIWGQEQGR 768
+T +++++F+S +G+ ++ KSV ++P++ M FK PKG++ E+E L F W + +
Sbjct: 930 KRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQ 989
Query: 769 KKINWIGWDQICLNRKAGGLGLGFIEWRNRGLLLKWAWRFGREINSLWRFFVIERYNLDP 828
+ I W+ W ++ ++K GGLG + N LL K AWR + NSL+ + RY D
Sbjct: 990 RGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKD- 1048
Query: 829 DSLIWHMASTTPAMGSRAIQDIWRVLNEDHSLSAGFKENLLISIGDGSRVKFWRDPWVSN 888
S A + W L + +L K+ IGDG ++ D N
Sbjct: 1049 -------VSILDAKVRKQQSYGWASLLDGIAL---LKKGTRHLIGDGQNIRIGLD----N 1094
Query: 889 VALCHLFPRLYAMSENKEARIAEVGTYSRGKWGWSLTFRGQFFAWEEELYQQFLASINH- 947
+ H L KE I + + R +G ++ W++ QF+ +H
Sbjct: 1095 IVDSHPPRPLNTEETYKEMTINNL--FER---------KGSYYFWDDSKISQFVDQSDHG 1143
Query: 948 -----IIPAAVGGDQLIWCANQTGLFSVKELCYWLEDH----------------LFTHQM 986
+ + D++IW N TG ++V+ YWL H ++
Sbjct: 1144 FIHRIYLAKSKKPDKIIWNYNTTGEYTVRS-GYWLLTHDPSTNIPAINPPHGSIDLKTRI 1202
Query: 987 WQVPKSIAKLLPPKVALFFWQAQNDKIATRANLLARGIDLNGSTQCLFCNAFDESCNHIF 1046
W +P + PK+ F W+A + +AT L RG+ ++ C C+ +ES NH
Sbjct: 1203 WNLP------IMPKLKHFLWRALSQALATTERLTTRGMRID--PICPRCHRENESINHAL 1254
Query: 1047 LHCHSIWSLWCVIVNRERFLWVMPASL-ADLILEWDFLPKISD----------KSLWSLI 1095
C W W+ +SL + ++ DF IS+ L+
Sbjct: 1255 FTCPFATMAW----------WLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLL 1304
Query: 1096 PYALSWSIWIERNNICFNHKALNISEIWDFHLLRIGWWTHELLRQNSYSIDQLSRNFESI 1155
P L W IW RNN+ FN + S+ +L TH+ L +++ +
Sbjct: 1305 PVWLIWRIWKARNNVVFNKFRESPSKT----VLSAKAETHDWL--------NATQSHKKT 1352
Query: 1156 RFASKPSLLRAASWVTPDAGLIKINVDGAAKGSPGRCGIGGILRNNANVILGFFS-KSVG 1214
++ W P A +K N D G I+RN+ + + S K
Sbjct: 1353 PSPTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAH 1412
Query: 1215 EGYAFEAEVLAIHEALLFCVQRQLRNIIIESDSSLAVGWVNNRCNRPWKLLNKLNQIDRW 1274
EAE A+ AL R + +E D + +N + L N L I W
Sbjct: 1413 TSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLING-ISFHSSLANHLEDISFW 1471
Query: 1275 LVETNCLKVNHIYREANGEADKLAKRGAEY 1304
+ ++ I R+ N A LAK G Y
Sbjct: 1472 ANKFASIQFGFIRRKGNKLAHVLAKYGCTY 1501
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 303 bits (777), Expect = 3e-82
Identities = 240/865 (27%), Positives = 396/865 (45%), Gaps = 86/865 (9%)
Query: 414 FFSSGRISRGMNAAFITLIPKKENASSLNHYRPISLIRSSYKLIAKVLATRLQKVMPKLL 473
FF +G + + N I LIPK + ++ RPISL YK+I+K+L RL+K +P ++
Sbjct: 452 FFETGVLPQDWNHTHICLIPKITSPQRMSDLRPISLCSVLYKIISKILTQRLKKHLPAIV 511
Query: 474 SQNQFAFTKERQIADCILLANEVADFL---SKKSEGGLMLKVDLAKAYDQVDWEFLINML 530
S Q AF +R I+D IL+A+E+ L + S+ + K D++KAYD+V+W FL M+
Sbjct: 512 STTQSAFVPQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMM 571
Query: 531 HEMNFGDKWISWMKSCISSASLAILVNGSPTDFFSIEKGLRQGDPLSPLLFNLCLNGLSC 590
+ F +KWISW+ +C++S S ++L+NG P +G+RQGDPLSP LF LC L
Sbjct: 572 TALGFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIH 631
Query: 591 LLNQFLGEENYCGVRI-SRNLTINHLLFADDTLLFCENNELQLETLCNVLITFLFASGLK 649
+LN+ G++ + +++NHLLFADDTLL C+ + + E L L + SG
Sbjct: 632 ILNKAEQAGKITGIQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQM 691
Query: 650 VNNQKSEL-IGCNVQTVEVERLAHSFGWSVGTLPISYLGAP--LGGNPRRIVFWNPMLEK 706
+N KS + G NV + + G S+ YLG P L G+ R + + + EK
Sbjct: 692 INLNKSAITFGKNVDIQIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRDL--FGFIKEK 749
Query: 707 LKCKTRSYNSKFMSLSGRLVITKSVLCSIPLFLMVVFKAPKGVILEVEKLFHAFIWGQEQ 766
L+ + + +K +S G+ V+ KS+ ++P+++M FK PK + ++ + F W Q
Sbjct: 750 LQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQ 809
Query: 767 GRKKINWIGWDQICLNRKAGGLGLGFIEWRNRGLLLKWAWRFGREINSLWRFFVIERYNL 826
++KI+W+ W ++ L + GG G ++ N+ LL K AWR +E SL+ RY
Sbjct: 810 QKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFS 869
Query: 827 DPDSLIWHMASTTPAMGSRAIQDIWRVLNEDHSLSAGFKENLLISIGDGSRVKFWRDPWV 886
+ D L + GSR WR + L + L IG+G + W D W+
Sbjct: 870 NSDFL-------SATRGSRP-SYAWRSILFGREL---LMQGLRTVIGNGQKTFVWTDKWL 918
Query: 887 SNVALCHLFPRLYAMSENKEARIAE-VGTYSRGKWGWSLTFRGQFFAWEEELYQQFLASI 945
+ + + P N + ++++ + SR W+L F W++ + I
Sbjct: 919 HDGS--NRRPLNRRRFINVDLKVSQLIDPTSR---NWNLNMLRDLFPWKD------VEII 967
Query: 946 NHIIPAAVGGDQLIWCANQTGLFSVKELCYWLEDHLFTHQMWQ---VPKSIAKLL----- 997
P D W + GL+SVK +L + H+++Q V S+ L
Sbjct: 968 LKQRPLFFKEDSFCWLHSHNGLYSVKTGYEFLSKQVH-HRLYQEAKVKPSVNSLFDKIWN 1026
Query: 998 ---PPKVALFFWQAQNDKIATRANLLARGIDLNGSTQCLFCNAFDESCNHIFLHC---HS 1051
PK+ +F W+A + I L RGI CL C+ +E+ NHI C
Sbjct: 1027 LHTAPKIRIFLWKALHGAIPVEDRLRTRGI--RSDDGCLMCDTENETINHILFECPLARQ 1084
Query: 1052 IWSLWCVIVNRERF---LWVMPASLADLILEWDFLPKISDKSLWSLIPYALSWSIWIERN 1108
+W++ + F ++ + L DL + D + S W L W +W RN
Sbjct: 1085 VWAITHLSSAGSEFSNSVYTNMSRLIDLTQQNDLPHHLRFVSPWIL------WFLWKNRN 1138
Query: 1109 NICFNHKALNISEIWD-----FHLLRIGWWTHELLRQNSYSIDQLSRNFESIRFASKPSL 1163
+ F K + + D +H W++ + QN
Sbjct: 1139 ALLFEGKGSITTTLVDKAYEAYH----EWFSAQTHMQND------------------EKH 1176
Query: 1164 LRAASWVTPDAGLIKINVDGAAKGSPGRCGIGGILRNNANVILGFFSKSVGEGYA-FEAE 1222
L+ W P G +K N+ A G ++R++ +L +S E ++ + A+
Sbjct: 1177 LKITKWCPPLPGELKCNIGFAWSKQHHFSGASWVVRDSQGKVLLHSRRSFNEVHSPYSAK 1236
Query: 1223 VLAIHEALLFCVQRQLRNIIIESDS 1247
+ + AL +I S +
Sbjct: 1237 IRSWEWALESMTHHHFDRVIFASST 1261
>At1g31030 F17F8.5
Length = 872
Score = 301 bits (770), Expect = 2e-81
Identities = 205/672 (30%), Positives = 332/672 (48%), Gaps = 49/672 (7%)
Query: 404 GAWFEWMFEDFFSSGRISRGMNAAFITLIPKKENASSLNHYRPISLIRSSYKLIAKVLAT 463
G F + FF G + +G+N+ + LIPKK A + YRPIS YK+I+K++A
Sbjct: 136 GQEFTLPVQSFFQKGFLPKGINSIILALIPKKLAAKEMRDYRPISCCNVLYKVISKIIAN 195
Query: 464 RLQKVMPKLLSQNQFAFTKERQIADCILLANE-VADFLSKKSEGGLMLKVDLAKAYDQVD 522
RL+ ++P+ +++NQ AF K+R + + +LLA E V D+ +K+D++KA+D V
Sbjct: 196 RLKLLLPRFIAENQSAFVKDRLLIENLLLATELVKDYHKDSISARCAIKIDISKAFDSVQ 255
Query: 523 WEFLINMLHEMNFGDKWISWMKSCISSASLAILVNGSPTDFFSIEKGLRQGDPLSPLLFN 582
W FL N L MNF +I W+ CI++AS ++ VNG +F ++GLRQG LSP LF
Sbjct: 256 WSFLTNTLVAMNFSPTFIHWINLCITTASFSVQVNGDLVGYFQSKRGLRQGCSLSPYLFV 315
Query: 583 LCLNGLSCLLNQFLGEENYCGVRISRNLTINHLLFADDTLLFCENNELQLETLCNVLITF 642
+C++ LS +L++ G + + L + HL FADD ++ + +E + V F
Sbjct: 316 ICMDVLSKMLDKAAGVRKFGFHPKCQRLGLTHLSFADDLMVLSDGKTRSIEGILEVFDEF 375
Query: 643 LFASGLKVNNQKSELIGCNVQTVEVERLAHSFGWSVGTLPISYLGAPLGGNPRRIVFWNP 702
SGL+++ +KS L V + + +A F + VG LP+ YLG PL ++P
Sbjct: 376 CKRSGLRISLEKSTLYMAGVSPIIKQEIAAKFLFDVGQLPVRYLGLPLVTKRLTSADYSP 435
Query: 703 MLEKLKCKTRSYNSKFMSLSGRLVITKSVLCSIPLFLMVVFKAPKGVILEVEKLFHAFIW 762
+LE++K + ++ +F S +GR + KSVL SI F + F+ P+ I E++KL +F+W
Sbjct: 436 LLEQIKKRIATWTFRFFSFAGRFNLIKSVLWSICNFWLAAFRLPRQCIREIDKLCSSFLW 495
Query: 763 -GQEQGRKKINWIGWDQICLNRKAGGLGLGFIEWRNRGLLLKWAWRFGREINSLWRFFVI 821
G E K I WD +C + GGLGL ++ N LK WR NSLW +V
Sbjct: 496 SGSEMSSHKAK-ISWDIVCKPKAEGGLGLRNLKEANDVSCLKLVWRIISNSNSLWTKWVA 554
Query: 822 ERYNLDPDSLIWHMASTTPAMGSRAIQDIWRVLNEDHSLSAGFKENLLISIGDGSRVKFW 881
E Y + S IW + +T +MGS IWR + + ++ F + +G+G FW
Sbjct: 555 E-YLIRKKS-IWSLKQST-SMGSW----IWRKILKIRDVAKSFSR---VEVGNGESASFW 604
Query: 882 RDPWVSNVALCHLF--PRLYAMSENKEARIAEVGT-YSRGKWGWSLTFRGQFFAWEEELY 938
D W ++ L + +EA +A+ T SR + SL + E Y
Sbjct: 605 YDHWSAHGRLIDTVGDKGTIDLGIPREASVADAWTRRSRRRHRTSLLNEIE----EMMAY 660
Query: 939 QQFLASINHIIPAAVGGDQLIWCANQTGLFSVKELCYWLEDHLFTHQMWQVPKSIAKLL- 997
Q+ I+H + D ++W + +F + H T W + K+ + +
Sbjct: 661 QR----IHH----SDAEDTVLW-RGKNDVF---------KPHFSTRDTWHLIKATSSTVS 702
Query: 998 ----------PPKVALFFWQAQNDKIATRANLLARGIDLNGSTQCLFCNAFDESCNHIFL 1047
PK AL W A ++++ T +L + S C+ C ++ H+F
Sbjct: 703 WHKGVWFRHATPKYALCTWLAIHNRLPTGDRMLKWNSSGSVSGNCVLCTNNSKTLEHLFF 762
Query: 1048 HCHSIWSLWCVI 1059
C ++W +
Sbjct: 763 SCSYASTVWAAL 774
>At1g47850 hypothetical protein
Length = 799
Score = 298 bits (764), Expect = 1e-80
Identities = 199/668 (29%), Positives = 328/668 (48%), Gaps = 34/668 (5%)
Query: 403 SGAWFEWMFEDFFSSGRISRGMNAAFITLIPKKENASSLNHYRPISLIRSSYKLIAKVLA 462
+G F + FF G + +G+NA + LIPKK+ A+ + YRPIS YK+I+K++A
Sbjct: 61 TGQDFIAAIKSFFIKGFLPKGLNATILALIPKKDEATLMRDYRPISCCNVIYKVISKIIA 120
Query: 463 TRLQKVMPKLLSQNQFAFTKERQIADCILLANE-VADFLSKKSEGGLMLKVDLAKAYDQV 521
RL+ ++P + QNQ AF +ER + + +LLA E V D+ +K+D++KA+D V
Sbjct: 121 NRLKVMLPTFILQNQSAFVRERLLIENVLLATELVKDYHKDSISPRCAMKIDISKAFDSV 180
Query: 522 DWEFLINMLHEMNFGDKWISWMKSCISSASLAILVNGSPTDFFSIEKGLRQGDPLSPLLF 581
W+FL+N L +NF + + W+K CIS+A+ ++ VNG FF ++GLRQG LSP LF
Sbjct: 181 QWQFLLNTLEALNFPENFCHWIKLCISTATFSVQVNGELAGFFGSKRGLRQGCALSPYLF 240
Query: 582 NLCLNGLSCLLNQFLGEENYCGVRISRNLTINHLLFADDTLLFCENNELQLETLCNVLIT 641
+C+N LS +++ N + L++ HL FADD ++F + + +E + N+
Sbjct: 241 VICMNVLSHMIDVAAVHRNIGYHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIFKE 300
Query: 642 FLFASGLKVNNQKSELIGCNVQTVEVERLAHSFGWSVGTLPISYLGAPLGGNPRRIVFWN 701
F SGL ++ +KS L V + + +F ++ G LP+ YLG PL ++
Sbjct: 301 FAGKSGLHISLEKSTLYLAGVSELNRNNILSAFPFASGQLPVRYLGLPLLTKQMTTADYS 360
Query: 702 PMLEKLKCKTRSYNSKFMSLSGRLVITKSVLCSIPLFLMVVFKAPKGVILEVEKLFHAFI 761
P+L+K++ K S+ ++ +S +GRL + SV+ S+ F M ++ P G I E+EKL AF+
Sbjct: 361 PLLDKVRSKISSWTARSLSYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFL 420
Query: 762 WGQEQGRKKINWIGWDQICLNRKAGGLGLGFIEWRNRGLLLKWAWRFGREINSLWRFFVI 821
W + K I W +C ++ GGLG+ + N+ LK WR +SLW +V
Sbjct: 421 WSGPELNPKKAKITWTSLCKLKQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNWV- 479
Query: 822 ERYNLDPDSLIWHMASTTPAMGSRAIQDIWRVLNEDHSLSAGFKENLLISIGDGSRVKFW 881
Y + S W A+ ++GS +W+ L + ++ K + I GS FW
Sbjct: 480 WTYIIRKGS-FW-SANDRSSLGSW----MWKKLLKYRDVA---KSMCKVEIKSGSSTSFW 530
Query: 882 RDPWVSNVALCHL--FPRLYAMSENKEARIAEVGTYSRGKWGWSLTFRGQFFAWEEELYQ 939
D W L + R M A +A V R K +Y
Sbjct: 531 YDNWSQLGQLVDVTNARRTIDMGIPLAATVATVLASHRTK------------HHRTAIYN 578
Query: 940 QFLASINHIIPAAVGG--DQLIWCANQTGLFS--VKELCYWLEDHLFTHQMWQVPKSI-A 994
+ A I I+ G D +W ++ + ++ + + TH+ W K +
Sbjct: 579 KIEAEIQSILQRERSGAPDIFLWRSSGDNFRQSFITKVTWHNIRVIHTHRQWY--KGVWF 636
Query: 995 KLLPPKVALFFWQAQNDKIATRANLLARGIDLNGSTQCLFCNAFDESCNHIFLHCHSIWS 1054
PK + W A +D+++T + + + C+ C +ES NH+F CH +
Sbjct: 637 SYNTPKYSFLLWLAIHDRLSTGDRI--KKWNSGQQVNCVLCGNVEESRNHLFFSCHYTTA 694
Query: 1055 LWCVIVNR 1062
+W + R
Sbjct: 695 IWDNLTRR 702
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 298 bits (762), Expect = 2e-80
Identities = 257/907 (28%), Positives = 417/907 (45%), Gaps = 82/907 (9%)
Query: 414 FFSSGRISRGMNAAFITLIPKKENASSLNHYRPISLIRSSYKLIAKVLATRLQKVMPKLL 473
FF +S +N +TLIPK ++ YRPI+L YK++AK+L RLQ + +L+
Sbjct: 415 FFVDSCLSPRLNETHVTLIPKISAPRKVSDYRPIALCNVQYKIVAKILTRRLQPWLSELI 474
Query: 474 SQNQFAFTKERQIADCILLANEVADFL---SKKSEGGLMLKVDLAKAYDQVDWEFLINML 530
S +Q AF R IAD +L+ +E+ FL K + +K D++KAYD++ W FL +L
Sbjct: 475 SLHQSAFVPGRAIADNVLITHEILHFLRVSGAKKYCSMAIKTDMSKAYDRIKWNFLQEVL 534
Query: 531 HEMNFGDKWISWMKSCISSASLAILVNGSPTDFFSIEKGLRQGDPLSPLLFNLCLNGLSC 590
+ F DKWI W+ C+ + S + L+NGSP +GLRQGDPLSP LF LC LS
Sbjct: 535 MRLGFHDKWIRWVMQCVCTVSYSFLINGSPQGSVVPSRGLRQGDPLSPYLFILCTEVLSG 594
Query: 591 LLNQFLGEENYCGVRISR-NLTINHLLFADDTLLFCENNELQLETLCNVLITFLFASGLK 649
L + + G+R++R + +NHLLFADDT+ FC+ N L N+L + ASG
Sbjct: 595 LCRKAQEKGVMVGIRVARGSPQVNHLLFADDTMFFCKTNPTCCGALSNILKKYELASGQS 654
Query: 650 VNNQKSELIGCNVQTVEVER-----LAHSFGWSVGTLPISYLGAPLGGNPRRIVFWNPML 704
+N KS + + +++R L +G YLG P R+ ++ ++
Sbjct: 655 INLAKSAITFSSKTPQDIKRRVKLSLRIDNEGGIG----KYLGLPEHFGRRKRDIFSSIV 710
Query: 705 EKLKCKTRSYNSKFMSLSGRLVITKSVLCSIPLFLMVVFKAPKGVILEVEKLFHAFIWGQ 764
++++ ++ S++ +F+S +G+ ++ K+VL S+P + M+ FK P + +++ + F W
Sbjct: 711 DRIRQRSHSWSIRFLSSAGKQILLKAVLSSMPSYAMMCFKLPASLCKQIQSVLTRFWWDS 770
Query: 765 EQGRKKINWIGWDQICLNRKAGGLGLGFIEWRNRGLLLKWAWRFGREINSLWRFFVIERY 824
+ ++K+ W+ WD++ L GGLG IE K +WR +E +SL ++ +Y
Sbjct: 771 KPDKRKMAWVSWDKLTLPINEGGLGFREIE-------AKLSWRILKEPHSLLSRVLLGKY 823
Query: 825 NLDPDSLIWHMASTTPAMGSRAIQDIWRVLNEDHSLSAGFKENLLISIGDGSRVKFWRDP 884
++ + S +P+ S WR + L ++ L SIG G + W +
Sbjct: 824 ---CNTSSFMDCSASPSFASHG----WRGILAGRDL---LRKGLGWSIGQGDSINVWTEA 873
Query: 885 WVSNVALCHLFPRLYAMSENKEARIAEVGTYSRGKWGWSLTFRGQFFAWEEELYQQFLAS 944
W+S + P NK+ + ++ + W R +E+++ + +
Sbjct: 874 WLSPSS--PQTPIGPPTETNKDLSVHDLICHDVKSWNVE-AIRKHLPQYEDQIRK---IT 927
Query: 945 INHIIPAAVGGDQLIWCANQTGLFSVKELCYWLEDHLFTHQM----WQVPKSIAKL-LPP 999
IN A D L+W ++G ++ K + + F WQ K+I K+ P
Sbjct: 928 IN----ALPLQDSLVWLPVKSGEYTTKTGYALAKLNSFPASQLDFNWQ--KNIWKIHTSP 981
Query: 1000 KVALFFWQAQNDKIATRANLLARGIDLNGSTQCLFCNAFDESCNHIFLHC---HSIWSLW 1056
KV F W+A + L R I+ C C ES H+ L C +W L
Sbjct: 982 KVKHFLWKAMKGALPVGEALSRRNIE--AEVTCKRCGQ-TESSLHLMLLCPYAKKVWELA 1038
Query: 1057 CVIVNRERFLWVMPASLADLILEWDFLPKISDKSLWS--LIPYALSWSIWIERNNICF-N 1113
V+ N +S+A L+++ + + L S L P+ L W +W RN + F N
Sbjct: 1039 PVLFNPSE---ATHSSVALLLVDAKRMVALPPTGLGSAPLYPWLL-WHLWKARNRLIFDN 1094
Query: 1114 HKALNISEIWDFHLLRIGWWTHELLRQNSYSIDQLSRNFESIRFASKPSLLRAASWVTPD 1173
H + L W +LL + PS + TP+
Sbjct: 1095 HSCSEEGLVLKAILDARAWMEAQLLIHH-------------------PSPISDYPSPTPN 1135
Query: 1174 AGLIKINVDGAAKGSPGRCGIGGILRNNANV-ILGFFSKSVGEGYAFEAEVLAIHEALLF 1232
+ VD AA + G CG+G L++ V I S S G A AE LA+H AL+
Sbjct: 1136 LKVTSCFVD-AAWTTSGYCGMGWFLQDPYKVKIKENQSSSSFVGSALMAETLAVHLALVD 1194
Query: 1233 CVQRQLRNIIIESDSSLAVGWVNNRCNRPWKLLNKLNQIDRWLVETNCLKVNHIYREANG 1292
+ +R + + SD + +N+ +L L+ I V L I R +N
Sbjct: 1195 ALSTGVRQLNVFSDCKELISLLNSG-KSIVELRGLLHDIRELSVSFTHLCFFFIPRLSNV 1253
Query: 1293 EADKLAK 1299
AD LAK
Sbjct: 1254 VADSLAK 1260
>At3g45550 putative protein
Length = 851
Score = 296 bits (758), Expect = 5e-80
Identities = 227/802 (28%), Positives = 373/802 (46%), Gaps = 81/802 (10%)
Query: 414 FFSSGRISRGMNAAFITLIPKKENASSLNHYRPISLIRSSYKLIAKVLATRLQKVMPKLL 473
FF S + +N I +IPK +N +L+ YRPI+L YK+I+K + RL+ + ++
Sbjct: 95 FFESSHMKTSVNHTNICMIPKIQNPQTLSDYRPIALCNVLYKVISKCMVNRLKAHLNSIV 154
Query: 474 SQNQFAFTKERQIADCILLANEVADFLSKK---SEGGLMLKVDLAKAYDQVDWEFLINML 530
S +Q AF R I D +++A+E+ L + S+ + +K D++KAYD+V+W+FL +
Sbjct: 155 SDSQAAFIPGRIINDNVMIAHEIMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTM 214
Query: 531 HEMNFGDKWISWMKSCISSASLAILVNGSPTDFFSIEKGLRQGDPLSPLLFNLCLNGLSC 590
F DKWI W+ + + S ++L+NGSP + S +G+RQGDPLSP LF LC + LS
Sbjct: 215 RLFGFCDKWIGWIMAAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYLFILCGDILSH 274
Query: 591 LLNQFLGEENYCGVRISRNL-TINHLLFADDTLLFCENNELQLETLCNVLITFLFASGLK 649
L+ + GVRI I HL FADD+L FC+ N + L +V + + SG K
Sbjct: 275 LIKVKASSGDIRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQK 334
Query: 650 VNNQKSEL-IGCNVQTVEVERLAHSFGWSVGTLPISYLGAPLGGNPRRIVFWNPMLEKLK 708
+N QKS + G V RL YLG P ++ +N +++++K
Sbjct: 335 INVQKSLITFGSRVYGSTQTRLKTLLNIPNQGGGGKYLGLPEQFGRKKKEMFNYIIDRVK 394
Query: 709 CKTRSYNSKFMSLSGRLVITKSVLCSIPLFLMVVFKAPKGVILEVEKLFHAFIWGQEQGR 768
+T S+++KF+S +G+ ++ KSV ++P++ M FK P+G++ E+E L F W + +
Sbjct: 395 ERTASWSAKFLSPAGKEILLKSVALAMPVYAMSCFKLPQGIVSEIESLLMNFWWEKASNK 454
Query: 769 KKINWIGWDQICLNRKAGGLGLGFIEWRNRGLLLKWAWRFGREINSLWRFFVIERYNLDP 828
+ I W+ W ++ ++K GGLG + N LL K AWR + NSL+ + RY D
Sbjct: 455 RGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRIIQYPNSLFARVMKARYFKD- 513
Query: 829 DSLIWHMASTTPAMGSRAIQDIWRVLNEDHSLSAGFKENLLISIGDGSRVKFWRDPWVSN 888
+S+I + + G W L +L ++ IGDG ++ + N
Sbjct: 514 NSIIDAKTRSQQSYG-------WSSLLSGIAL---LRKGTRYVIGDGKTIRL----GIDN 559
Query: 889 VALCHLFPRLYAMSENKEARIAEVGTYSRGKWGWSLTFRGQFFAWEEELYQQFLASINH- 947
V H P +++ + ++ + RG W+ Q F+ +H
Sbjct: 560 VVDSH--PPRPLLTDEQHNGLSLDNLFQH---------RGHSRCWDNAKLQTFVDQSDHD 608
Query: 948 -----IIPAAVGGDQLIWCANQTGLFSVKELCYWLEDHLFTH----------------QM 986
+ D+LIW N TG ++V+ YWL H ++ ++
Sbjct: 609 YIKRIYLSTRSKTDRLIWSYNSTGDYTVRS-GYWLSTHDPSNTIPTMAKPHGSVDLKTKI 667
Query: 987 WQVPKSIAKLLPPKVALFFWQAQNDKIATRANLLARGIDLNGSTQCLFCNAFDESCNHIF 1046
W +P + PK+ F W+ + + T L RG+ ++ C C +ES NH
Sbjct: 668 WNLP------IMPKLKHFLWRILSKALPTTDRLTTRGMRIDPG--CPRCRRENESINHAL 719
Query: 1047 LHC---HSIWSLWCVIVNRERFLW-VMPASLADLILEWDFLPKISDKSLWSLIPYALSWS 1102
C W L + R L + ++++++L L + LIP+ L W
Sbjct: 720 FTCPFATMAWRLSDTPLYRSSILSNNIEDNISNILL---LLQNTTITDSQKLIPFWLLWR 776
Query: 1103 IWIERNNICFNHKALNISEIWDFHLLRIGWWTHELLRQNSYSIDQLSRNFESIRFASKPS 1162
IW RNN+ FN N+ E ++R T+E L + R + +
Sbjct: 777 IWKARNNVVFN----NLRESPSITVVRAKAETNEWLNATQTQGPR--------RLPKRTT 824
Query: 1163 LLRAASWVTPDAGLIKINVDGA 1184
+WV P IK N D +
Sbjct: 825 AAGNTTWVKPQMPYIKCNFDAS 846
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 296 bits (758), Expect = 5e-80
Identities = 263/978 (26%), Positives = 433/978 (43%), Gaps = 117/978 (11%)
Query: 381 LNPLTAIKPQGLTALI*NSFRNSGAWFEW----MFEDFFSSGRISRGMNAAFITLIPKKE 436
++P A P G+TAL F+ S A + + F G + +N I LIPK E
Sbjct: 224 IHPEKAPGPDGMTALF---FQKSWAIIKSDLLSLVNSFLQEGVFDKRLNTTNICLIPKTE 280
Query: 437 NASSLNHYRPISLIRSSYKLIAKVLATRLQKVMPKLLSQNQFAFTKERQIADCILLANEV 496
+ + RPISL YK+I+K+L RL+ V+P L+S+ Q AF R I+D IL+A E+
Sbjct: 281 RPTRMTELRPISLCNVGYKVISKILCQRLKTVLPNLISETQSAFVDGRLISDNILIAQEM 340
Query: 497 ADFLSKKS---EGGLMLKVDLAKAYDQVDWEFLINMLHEMNFGDKWISWMKSCISSASLA 553
L S + + +K D++KAYDQV+W F+ +L +M F +KWISW+ CI++
Sbjct: 341 FHGLRTNSSCKDKFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYK 400
Query: 554 ILVNGSPTDFFSIEKGLRQGDPLSPLLFNLCLNGLSCLLNQFLGEENYCGVRISR-NLTI 612
+L+NG P E+GLRQGDPLSP LF LC L + + + G++++ + +
Sbjct: 401 VLINGQPKGLIIPERGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKVATPSPAV 460
Query: 613 NHLLFADDTLLFCENNELQLETLCNVLITFLFASGLKVNNQKSEL-IGCNVQ-----TVE 666
+HLLFADD+L FC+ N+ Q + +L + SG ++N KS + G V+ ++
Sbjct: 461 SHLLFADDSLFFCKANKEQCGIILEILKQYESVSGQQINFSKSSIQFGHKVEDSIKADIK 520
Query: 667 VERLAHSFGWSVGTLPISYLGAP--LGGNPRRIVFWNPMLEKLKCKTRSYNSKFMSLSGR 724
+ H+ G +G SYLG P LGG+ ++ ++ + ++L+ + +++KF+S G+
Sbjct: 521 LILGIHNLG-GMG----SYLGLPESLGGSKTKV--FSFVRDRLQSRINGWSAKFLSKGGK 573
Query: 725 LVITKSVLCSIPLFLMVVFKAPKGVILEVEKLFHAFIWGQEQGRKKINWIGWDQICLNRK 784
V+ KSV ++P ++M F+ PK + ++ F W + ++W+ WD++C ++
Sbjct: 574 EVMIKSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKS 633
Query: 785 AGGLGLGFIEWRNRGLLLKWAWRFGREINSLWRFFVIERYNLDPDSLIWHMASTTPAMGS 844
GGLG ++ N LL K WR +SL+ RY + L + S +P+ G
Sbjct: 634 DGGLGFRNVDDFNSALLAKQLWRLITAPDSLFAKVFKGRYFRKSNPLD-SIKSYSPSYG- 691
Query: 845 RAIQDIWRVLNEDHSLSAGFKENLLISIGDGSRVKFWRDPWVSNVALCHLFPR--LYAMS 902
WR + SL + L+ +G G+ + W DPW+ FPR Y S
Sbjct: 692 ------WRSMISARSL---VYKGLIKRVGSGASISVWNDPWIP-----AQFPRPAKYGGS 737
Query: 903 ENKEARIAEVGTYSRGKWGWSLTFRGQFFAWEEELYQQFLASINHIIPAAVG------GD 956
+ + SR + W++ + F E+ L N + +G G+
Sbjct: 738 IVDPSLKVKSLIDSRSNF-WNIDLLKELFDPEDVPLISALPIGNPNMEDTLGWHFTKAGN 796
Query: 957 QLIWCANQTGLFSVKELCYWLEDHLFTHQ--MWQVPKSIAKLLPPKVALFFWQAQNDKIA 1014
+ T + E + L T + +W+V PPK+ F WQ + +
Sbjct: 797 YTVKSGYHTARLDLNEGTTLIGPDLTTLKAYIWKVQ------CPPKLRHFLWQILSGCVP 850
Query: 1015 TRANLLARGIDLNGSTQCLFCNAFDESCNHIFLHCHSIWSLWC---------------VI 1059
NL RGI + C+ C A +ES NH CH +W +
Sbjct: 851 VSENLRKRGILCDKG--CVSCGASEESINHTLFQCHPARQIWALSQIPTAPGIFPSNSIF 908
Query: 1060 VNRERFLWVMPASLADLILEWDFLPKISDKSLWSLIPYALSWSIWIERNNICFNHKALNI 1119
N + W +P+ + W + W IW RN F + +
Sbjct: 909 TNLDHLFWRIPSGVDSAPYPW------------------IIWYIWKARNEKVFENVDKDP 950
Query: 1120 SEIWDFHLLRIGWWTHELL-----RQNSYSIDQLSRNFESIRFASKPSLLRAASWVTPDA 1174
EI + W + R S SID R +R S T +
Sbjct: 951 MEILLLAVKEAQSWQEAQVELHSERHGSLSIDSRIR-------------VRDVSQDTTFS 997
Query: 1175 GLIKINVDGAAKGSPGRCGIGGILRNNANVILGFFSKSVGEGYA-FEAEVLAIHEALLFC 1233
G + +DG+ K S G G ++ + +V + E+ A+ A+
Sbjct: 998 G-FRCFIDGSWKASDQFSGTGWFCLSSLGESPTMGAANVRRSLSPLHTEMEALLWAMKCM 1056
Query: 1234 VQRQLRNIIIESDSSLAVGWVNNRCNRP-WKLLNKLNQIDRWLVETNCLKVNHIYREANG 1292
+ +N+ +D S V V++ P + + + Q DR E ++ I R AN
Sbjct: 1057 IGADNQNVAFFTDCSDLVKMVSSPTEWPAFSVYLEELQSDR--EEFTNFSLSLISRSANV 1114
Query: 1293 EADKLAKRGAEYPNDLWY 1310
+ADKLA++ P+ + Y
Sbjct: 1115 KADKLARKIRTVPHHVTY 1132
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 293 bits (750), Expect = 4e-79
Identities = 203/663 (30%), Positives = 317/663 (47%), Gaps = 56/663 (8%)
Query: 414 FFSSGRISRGMNAAFITLIPKKENASSLNHYRPISLIRSSYKLIAKVLATRLQKVMPKLL 473
FF+S R MN I LIPK + YRPI+L YK++AK++ R+Q ++PKL+
Sbjct: 369 FFTSKNFPRRMNETHIRLIPKDLGPRKVADYRPIALCNIFYKIVAKIMTKRMQLILPKLI 428
Query: 474 SQNQFAFTKERQIADCILLANEVADFL---SKKSEGGLMLKVDLAKAYDQVDWEFLINML 530
S+NQ AF R I+D +L+ +EV FL S K + +K D++KAYD+V+W+FL +L
Sbjct: 429 SENQSAFVPGRVISDNVLITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKKVL 488
Query: 531 HEMNFGDKWISWMKSCISSASLAILVNGSPTDFFSIEKGLRQGDPLSPLLFNLCLNGLSC 590
F WI W+ C++S S + L+NG+P +GLRQGDPLSP LF LC LS
Sbjct: 489 QRFGFHSIWIDWVLECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVLSG 548
Query: 591 LLNQFLGEENYCGVRISRN-LTINHLLFADDTLLFCENNELQLETLCNVLITFLFASGLK 649
L + GVR+S N +NHLLFADDT+ F +++ L +L + ASG
Sbjct: 549 LCTRAQRLRQLPGVRVSINGPRVNHLLFADDTMFFSKSDPESCNKLSEILSRYGKASGQS 608
Query: 650 VNNQKSELI-------GCNVQTVEVERLAHSFGWSVGTLPISYLGAPLGGNPRRIVFWNP 702
+N KS + Q + ++ G YLG P R+ +
Sbjct: 609 INFHKSSVTFSSKTPRSVKGQVKRILKIRKEGGTG------KYLGLPEHFGRRKRDIFGA 662
Query: 703 MLEKLKCKTRSYNSKFMSLSGRLVITKSVLCSIPLFLMVVFKAPKGVILEVEKLFHAFIW 762
+++K++ K+ S+ S+F+S +G+ V+ K+VL S+PL+ M FK P + +++ L F W
Sbjct: 663 IIDKIRQKSHSWASRFLSQAGKQVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWW 722
Query: 763 GQEQGRKKINWIGWDQICLNRKAGGLGLGFIEWRNRGLLLKWAWRFGREINSLWRFFVIE 822
+ +K +W+ W ++ + AGGLG IE N LL K WR SL ++
Sbjct: 723 DTKPDVRKTSWVAWSKLTNPKNAGGLGFRDIERCNDSLLAKLGWRLLNSPESLLSRILLG 782
Query: 823 RYNLDPDSLIWHMASTTPAMGSRAIQDIWRVLNEDHSLSAGFKENLLISIGDGSRVKFWR 882
+Y S + + P+ G WR + + KE L I +G +V W
Sbjct: 783 KY-CHSSSFMECKLPSQPSHG-------WRSIIAGREI---LKEGLGWLITNGEKVSIWN 831
Query: 883 DPWVSNVALCHLFPRLYAMSENKEARIAEVGTYSRGKWGWSLTFRGQFFAWEEELYQQFL 942
DPW+S L P A+ E+++ R++ + + +W W+ E L +Q
Sbjct: 832 DPWLS--ISKPLVPIGPALREHQDLRVSALINQNTLQWDWNKI--AVILPNYENLIKQLP 887
Query: 943 ASINHIIPAAVGGDQLIWCANQTGLF---------SVKELCYWLEDHLFTHQMWQVPKSI 993
A P++ G D+L W ++G + SV + + +W++
Sbjct: 888 A------PSSRGVDKLAWLPVKSGQYTSRSGYGIASVASIPIPQTQFNWQSNLWKLQTL- 940
Query: 994 AKLLPPKVALFFWQAQNDKIATRANLLARGIDLNGSTQCLFCNAFDESCNHIFLHCHSIW 1053
PK+ W+A + + L+ R I + S C C A ES H+F HC
Sbjct: 941 -----PKIKHLMWKAAMEALPVGIQLVRRHI--SPSAACHRCGA-PESTTHLFFHCEFAA 992
Query: 1054 SLW 1056
+W
Sbjct: 993 QVW 995
Score = 32.0 bits (71), Expect = 2.4
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 15/89 (16%)
Query: 1218 AFEAEVLAIHEALLFCVQRQLRNIIIESDSSLAVGWVNNRCNRPWKLLNKLNQIDRWLVE 1277
A AE AI ALL +Q ++++ SDS V + + + +N+I L+E
Sbjct: 1129 ALSAEAWAIKSALLHALQLGRTDLMVLSDSKSVVDALTSNIS--------INEIYGLLME 1180
Query: 1278 TNCLKV-------NHIYREANGEADKLAK 1299
L+V N I R AN AD AK
Sbjct: 1181 IRALRVSFHSLCFNFISRSANAIADATAK 1209
>At2g05980 putative non-LTR retroelement reverse transcriptase
Length = 1352
Score = 290 bits (743), Expect = 3e-78
Identities = 212/729 (29%), Positives = 347/729 (47%), Gaps = 73/729 (10%)
Query: 412 EDFFSSGRISRGMNAAFITLIPKKENASSLNHYRPISLIRSSYKLIAKVLATRLQKVMPK 471
+ FF G + +G+N + LI KK S + YRPIS YK+++K++A RL++++P
Sbjct: 644 QSFFLKGFLPKGINTTILALISKKHEVSGMKDYRPISCCNVLYKIVSKLMANRLKEILPA 703
Query: 472 LLSQNQFAFTKERQIADCILLANE-VADFLSKKSEGGLMLKVDLAKAYDQVDWEFLINML 530
++ NQ AF K+R + + +LLA+E V D+ + LK+D++KA+D V W FLIN+L
Sbjct: 704 SIAPNQSAFIKDRLMMENLLLASELVKDYHKESISSRSALKIDISKAFDFVQWPFLINVL 763
Query: 531 HEMNFGDKWISWMKSCISSASLAILVNGSPTDFFSIEKGLRQGDPLSPLLFNLCLNGLSC 590
++ + +I W++ CI +AS ++ VNG + FF E+GLRQG LSP L+ +C+N LSC
Sbjct: 764 KAIHLPEMFIHWIELCIGTASFSVQVNGELSGFFRSERGLRQGCSLSPYLYVICMNVLSC 823
Query: 591 LLNQFLGEENYCGVRISRNLTINHLLFADDTLLFCENNELQLETLCNVLITFLFASGLKV 650
+L++ E+ RN+ + HL FADD ++F + ++ + F S LK+
Sbjct: 824 MLDKAAVEKKISYHPRCRNMNLTHLCFADDIMVFSDGTSKSIQGTLAIFEKFAAMSWLKI 883
Query: 651 NNQKSELIGCNVQTVEVERLAHSFGWSVGTLPISYLGAPLGGNPRRIVFWNPMLEKLKCK 710
+ +KS + + + F + +GTLP+ YLG PL + P++EK++ +
Sbjct: 884 SLEKSTIFMAGISPNAKTSILQQFPFELGTLPVKYLGLPLLTKRMTQSDYLPLVEKIRAR 943
Query: 711 TRSYNSKFMSLSGRLVITKSVLCSIPLFLMVVFKAPKGVILEVEKLFHAFIWGQEQGRKK 770
S+ ++F+S +GRL + KSVL SI F + VF+ PK + E+EK+F AF+W K
Sbjct: 944 ITSWTNRFLSFAGRLQLIKSVLSSITNFWLSVFRLPKACLQEIEKMFSAFLWSGPDLNTK 1003
Query: 771 INWIGWDQICLNRKAGGLGLGFIEWRNRGLLLKWAWRFGREINSLWRFFVIERYNLDPDS 830
I W ++C ++ GGLGL ++ N LLK WR +SLW +V +L
Sbjct: 1004 KAKIAWSEVCKLKEEGGLGLKPLKEANEVSLLKLIWRILSARDSLWVKWV--NKHLIRKE 1061
Query: 831 LIWHMASTTPAMGSRAIQDIWRVLNEDHSLSAGFKENLLISIGDGSRVKFWRDPWVSNVA 890
W + T +GS +WR + + + F + + G+ FW D W
Sbjct: 1062 TFWSVKENT-GLGSW----LWRKILKQRDKARLFHR---MEVRSGTFTSFWHDHWCPLGR 1113
Query: 891 L-CHLFPR-LYAMSENKEARIAEVGTYSRGKWGWSLTFRGQFFAWEEELYQQFLASINHI 948
L H+ R + A +AEV R K F Q + + EL +Q
Sbjct: 1114 LHQHMGSRGTIDLGIPNNATVAEVMNTHRRK-RHRADFLNQIKS-QIELARQ-------- 1163
Query: 949 IPAAVGGDQLIWCANQTGLFSVKELCYWLEDHLFTHQMWQVPKSIA-----------KLL 997
+ GD+ +W K+ + + + WQ +SI+
Sbjct: 1164 -DRSTDGDRSLW----------KQKEDTFKSSFSSSKTWQQIRSISLRCDWYRGVWFSAS 1212
Query: 998 PPKVALFFWQAQNDKIATRANLLARGIDLNGSTQCLFCNAFDESCNHIFLHC----HSIW 1053
PK + W A ++++ T + + C+FC E+ +H+F C H +
Sbjct: 1213 TPKYSFVTWLAFHNRLTTSDKICK--WNSGARYDCVFCGEELETRDHLFFSCPYSSHVWF 1270
Query: 1054 SLWCVIVNRERFLWVMPASLADLILEWDFL-PKISDKSLWSLIPYALSW-------SIWI 1105
SL ++N IL W+ + P + D S L + L + S+W
Sbjct: 1271 SLTKGLLNGRN------------ILNWNLITPHLLDSSRPYLHVFTLRYAFQASIHSLWR 1318
Query: 1106 ERNNICFNH 1114
ERN C H
Sbjct: 1319 ERN--CRRH 1325
>At2g28980 putative non-LTR retroelement reverse transcriptase
Length = 1529
Score = 287 bits (735), Expect = 2e-77
Identities = 200/674 (29%), Positives = 326/674 (47%), Gaps = 46/674 (6%)
Query: 403 SGAWFEWMFEDFFSSGRISRGMNAAFITLIPKKENASSLNHYRPISLIRSSYKLIAKVLA 462
+G F + FF G + +G+NA + LIPKK+ A + YRPIS YK+I+K+LA
Sbjct: 785 TGPDFIAAIQSFFVKGFLPKGLNATILALIPKKDEAIEMKDYRPISCCNVLYKVISKILA 844
Query: 463 TRLQKVMPKLLSQNQFAFTKERQIADCILLANE-VADFLSKKSEGGLMLKVDLAKAYDQV 521
RL+ ++P + QNQ AF KER + + +LLA E V D+ + +K+D++KA+D V
Sbjct: 845 NRLKLLLPSFILQNQSAFVKERLLMENVLLATELVKDYHKESVTPRCAMKIDISKAFDSV 904
Query: 522 DWEFLINMLHEMNFGDKWISWMKSCISSASLAILVNGSPTDFFSIEKGLRQGDPLSPLLF 581
W+FL+N L +NF + + W+K CIS+A+ ++ VNG FF +GLRQG LSP LF
Sbjct: 905 QWQFLLNTLEALNFPETFRHWIKLCISTATFSVQVNGELAGFFGSSRGLRQGCALSPYLF 964
Query: 582 NLCLNGLSCLLNQFLGEENYCGVRISRNLTINHLLFADDTLLFCENNELQLETLCNVLIT 641
+C+N LS ++++ N + + HL FADD ++F + ++ +E + NV
Sbjct: 965 VICMNVLSHMIDEAAVHRNIGYHPKCEKIGLTHLCFADDLMVFVDGHQWSIEGVINVFKE 1024
Query: 642 FLFASGLKVNNQKSELIGCNVQTVEVERLAHSFGWSVGTLPISYLGAPLGGNPRRIVFWN 701
F SGL+++ +KS + V + + SF ++ G LP+ YLG PL ++
Sbjct: 1025 FAGRSGLQISLEKSTIYLAGVSASDRVQTLSSFPFANGQLPVRYLGLPLLTKQMTTADYS 1084
Query: 702 PMLEKLKCKTRSYNSKFMSLSGRLVITKSVLCSIPLFLMVVFKAPKGVILEVEKLFHAFI 761
P++E +K K S+ ++ +S +GRL + SV+ SI F M ++ P G I E+EKL AF+
Sbjct: 1085 PLIEAVKTKISSWTARSLSYAGRLALLNSVIVSIANFWMSAYRLPAGCIREIEKLCSAFL 1144
Query: 762 WGQEQGRKKINWIGWDQICLNRKAGGLGLGFIEWRNRGLLLKWAWRFGREINSLW----R 817
W K I W IC +K GGLG+ + N+ LK WR SLW
Sbjct: 1145 WSGPVLNPKKAKIAWSSICQPKKEGGLGIKSLAEANKVSCLKLIWRLLSTQPSLWVTWIW 1204
Query: 818 FFVIERYNLDPDSLIWHMASTTPAMGSRAIQDIWRVLNEDHSLSAGFKENLLISIGDGSR 877
F+I + W A+ ++GS +W+ L + L+ + + + +GS
Sbjct: 1205 TFIIRK------GTFW-SANERSSLGSW----MWKKLLKYRELAKSMHK---VEVRNGSS 1250
Query: 878 VKFWRDPWVSNVALCHLFPRLYAMSENKEARIAEVGTYSRGKWGWSLTFRGQFFAWEEEL 937
FW D W HL RL ++ + R+ ++G L Q +
Sbjct: 1251 TSFWYDHW------SHL-GRLLDITGTR--RVIDLGIPLETNLETVLRTH-QHRQHRAAI 1300
Query: 938 YQQFLASINHI--IPAAVGGDQLIWCANQTGLFSVKELCYWLEDHLFTHQMWQ------- 988
Y + A I + G D +W + + F+ + + +++ THQ Q
Sbjct: 1301 YNRINAEIQRLQQQEREAGPDISLWRSLKND-FNKRFITKVTWNNVRTHQPQQNWYKGVW 1359
Query: 989 VPKSIAKLLPPKVALFFWQAQNDKIATRANLLARGIDLNGSTQCLFCNAFDESCNHIFLH 1048
P S PK + W ++++T + + + C CN +E+ +H+F
Sbjct: 1360 FPYS-----TPKYSFLLWLTVQNRLSTGDRI--KAWNSGQLVTCTLCNNAEETRDHLFFS 1412
Query: 1049 CHSIWSLWCVIVNR 1062
C +W + R
Sbjct: 1413 CQYTSYVWEALTQR 1426
>At1g25430 hypothetical protein
Length = 1213
Score = 286 bits (732), Expect = 5e-77
Identities = 224/740 (30%), Positives = 352/740 (47%), Gaps = 47/740 (6%)
Query: 389 PQGLTA-LI*NSFRNSGAWFEWMFEDFFSSGRISRGMNAAFITLIPKKENASSLNHYRPI 447
P G TA +S+ GA ++FFSSG + + NA I LIPK N + + +RPI
Sbjct: 467 PDGFTAEFFIDSWSIVGAEVTDAIKEFFSSGCLLKQWNATTIVLIPKIVNPTCTSDFRPI 526
Query: 448 SLIRSSYKLIAKVLATRLQKVMPKLLSQNQFAFTKERQIADCILLANEVADFL--SKKSE 505
S + + YK+IA++L RLQ+++ ++S Q AF R +A+ +LLA ++ S S
Sbjct: 527 SCLNTLYKVIARLLTDRLQRLLSGVISSAQSAFLPGRSLAENVLLATDLVHGYNWSNISP 586
Query: 506 GGLMLKVDLAKAYDQVDWEFLINMLHEMNFGDKWISWMKSCISSASLAILVNGSPTDFFS 565
G MLKVDL KA+D V WEF+I L + +K+I+W+ CIS+ + + +NG FF
Sbjct: 587 RG-MLKVDLKKAFDSVRWEFVIAALRALAIPEKFINWISQCISTPTFTVSINGGNGGFFK 645
Query: 566 IEKGLRQGDPLSPLLFNLCLNGLSCLLNQFLGEENYCGVRISRNLTINHLLFADDTLLFC 625
KGLRQGDPLSP LF L + S LL+ + NL+I+HL+FADD ++F
Sbjct: 646 STKGLRQGDPLSPYLFVLAMEAFSNLLHSRYESGLIHYHPKASNLSISHLMFADDVMIFF 705
Query: 626 ENNELQLETLCNVLITFLFASGLKVNNQKSELIGCNVQTVEVERLAHSFGWSVGTLPISY 685
+ L +C L F SGLKVN KS L + +E A ++G+ +GTLPI Y
Sbjct: 706 DGGSFSLHGICETLDDFASWSGLKVNKDKSHLYLAGLNQLESNANA-AYGFPIGTLPIRY 764
Query: 686 LGAPLGGNPRRIVFWNPMLEKLKCKTRSYNSKFMSLSGRLVITKSVLCSIPLFLMVVFKA 745
LG PL RI + P+LEK+ + RS+ +K +S +GR+ + SV+ F M F
Sbjct: 765 LGLPLMNRKLRIAEYEPLLEKITARFRSWVNKCLSFAGRIQLISSVIFGSINFWMSTFLL 824
Query: 746 PKGVILEVEKLFHAFIWGQEQGRKKINWIGWDQICLNRKAGGLGL-GFIEWRNRGLLLKW 804
PKG I +E L F+W + K + W +CL + GGLGL +EW N+ L ++
Sbjct: 825 PKGCIKRIESLCSRFLWSGNIEQAKGIKVSWAALCLPKSEGGLGLRRLLEW-NKTLSMRL 883
Query: 805 AWRFGREINSLWRFFVIERYNLDPDSLIWHMASTTPAMGSRAIQDIWRVLNEDHSLSAGF 864
WR +SLW + ++L S W + G ++ W+ L L+ F
Sbjct: 884 IWRLFVAKDSLWADWQ-HLHHLSRGS-FWAVE------GGQSDSWTWKRLLSLRPLAHQF 935
Query: 865 KENLLISIGDGSRVKFWRDPWVSNVALCHLFPRLYAMSENKEARIAEVGTYSRGKWGWSL 924
L+ +G+G + +W D W S L + + S + +A+V + + + GW L
Sbjct: 936 ---LVCKVGNGLKADYWYDNWTSLGPLFRIIGDI-GPSSLRVPLLAKVAS-AFSEDGWRL 990
Query: 925 TFRGQFFAWEEELYQQFLASINHIIPAAVGGDQLIWCANQTGLFSVKELCYWLEDHLFTH 984
A + L ++ A D+ W N +L
Sbjct: 991 PVSRSAPA---KGIHDHLCTVPVPSTAQEDVDRYEWSVNG-----------FLCQGFSAA 1036
Query: 985 QMWQV--PKSIAKL---------LPPKVALFFWQAQNDKIATRANLLARGIDLNGSTQCL 1033
+ W+ PK+ K PK A W + +++ TR L + G S C+
Sbjct: 1037 KTWEAIRPKATVKSWASSIWFKGAVPKYAFNMWVSHLNRLLTRQRLASWG--HIQSDACV 1094
Query: 1034 FCNAFDESCNHIFLHCHSIWSLWCVIVNRERFLWVMPASLADLILEWDFLPKISDKSLWS 1093
C+ ES +H+ L C +W ++ R + +S ++L+ + L
Sbjct: 1095 LCSFASESRDHLLLICEFSAQVWRLVFRRICPRQRLFSSWSELLSWVRQSSPEAPPLLRK 1154
Query: 1094 LIPYALSWSIWIERNNICFN 1113
++ + +++W +RNN+ N
Sbjct: 1155 IVSQVVVYNLWRQRNNLLHN 1174
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 285 bits (729), Expect = 1e-76
Identities = 196/664 (29%), Positives = 319/664 (47%), Gaps = 45/664 (6%)
Query: 412 EDFFSSGRISRGMNAAFITLIPKKENASSLNHYRPISLIRSSYKLIAKVLATRLQKVMPK 471
E FF +G + N + LIPK + + RPISL YK+I+K+L+ RL+K +P
Sbjct: 201 ELFFQTGILPEDWNHTHLCLIPKITKPARMADIRPISLCSVMYKIISKILSARLKKYLPV 260
Query: 472 LLSQNQFAFTKERQIADCILLANEVADFL---SKKSEGGLMLKVDLAKAYDQVDWEFLIN 528
++S Q AF ER ++D I+LA+E+ L K S+ ++ K D++KAYD+V+W FL
Sbjct: 261 IVSPTQSAFVAERLVSDNIILAHEIVHNLRTNEKISKDFMVFKTDMSKAYDRVEWPFLKG 320
Query: 529 MLHEMNFGDKWISWMKSCISSASLAILVNGSPTDFFSIEKGLRQGDPLSPLLFNLCLNGL 588
+L + F WI+WM +C+SS S ++L+NG P + +GLRQGDPLSP LF LC L
Sbjct: 321 ILLALGFNSTWINWMMACVSSVSYSVLINGQPFGHITPHRGLRQGDPLSPFLFVLCTEAL 380
Query: 589 SCLLNQFLGEENYCGVRIS-RNLTINHLLFADDTLLFCENNELQLETLCNVLITFLFASG 647
+LNQ G++ + ++NHLLFADDTLL C+ ++L+ + + L + SG
Sbjct: 381 IHILNQAEKIGKISGIQFNGTGPSVNHLLFADDTLLICKASQLECAEIMHCLSQYGHISG 440
Query: 648 LKVNNQKSEL-IGCNVQTVEVERLAHSFGWSVGTLPISYLGAPLGGNPRRIVFWNPMLEK 706
+N++KS + G V + + + G YLG P + V + + EK
Sbjct: 441 QMINSEKSAITFGAKVNEETKQWIMNRSGIQTEGGTGKYLGLPECFQGSKQVLFGFIKEK 500
Query: 707 LKCKTRSYNSKFMSLSGRLVITKSVLCSIPLFLMVVFKAPKGVILEVEKLFHAFIWGQEQ 766
L+ + + +K +S G+ ++ KS+ + P++ M F+ K + ++ + F W Q
Sbjct: 501 LQSRLSGWYAKTLSQGGKDILLKSIAMAFPVYAMTCFRLSKTLCTKLTSVMMDFWWNSVQ 560
Query: 767 GRKKINWIGWDQICLNRKAGGLGLGFIEWRNRGLLLKWAWRFGREINSLWRFFVIERYNL 826
+KKI+WIG ++ L + GG G ++ N+ LL K A R + +SL + RY +
Sbjct: 561 DKKKIHWIGAQKLMLPKFLGGFGFKDLQCFNQALLAKQASRLHTDSDSLLSQILKSRYYM 620
Query: 827 DPDSLIWHMASTTPAMGSRAIQDIWRVLNEDHSLSAGFKENLLISIGDGSRVKFWRDPWV 886
+ D L + G+R +L L +G K+ IG+G W D W+
Sbjct: 621 NSDFL-------SATKGTRPSYAWQSILYGRELLVSGLKK----IIGNGENTYVWMDNWI 669
Query: 887 SNVALCHLFPRLYAMSENKEARIAE-VGTYSRGKWGWSLTFRGQFFAWEEELYQQFLASI 945
+ P + + + ++++ + +SR W+L F W+E + I
Sbjct: 670 FDDKPRR--PESLQIMVDIQLKVSQLIDPFSRN---WNLNMLRDLFPWKE------IQII 718
Query: 946 NHIIPAAVGGDQLIWCANQTGLFSVKELCYWLEDHLFTHQMWQVPKSIAKLLP------- 998
P A D W GL++VK Y L QM++ + L P
Sbjct: 719 CQQRPMASRQDSFCWFGTNHGLYTVKSE-YDLCSRQVHKQMFKEAEEQPSLNPLFGKIWN 777
Query: 999 ----PKVALFFWQAQNDKIATRANLLARGIDLNGSTQCLFCNAFDESCNHIFLHC---HS 1051
PK+ +F W+ +A L RG+ + C C +E+ NHI C
Sbjct: 778 LNSAPKIKVFLWKVLKGAVAVEDRLRTRGVLIEDG--CSMCPEKNETLNHILFQCPLARQ 835
Query: 1052 IWSL 1055
+W+L
Sbjct: 836 VWAL 839
>At2g23880 putative non-LTR retroelement reverse transcriptase
Length = 1216
Score = 282 bits (721), Expect = 1e-75
Identities = 214/732 (29%), Positives = 353/732 (47%), Gaps = 60/732 (8%)
Query: 412 EDFFSSGRISRGMNAAFITLIPKKENASSLNHYRPISLIRSSYKLIAKVLATRLQKVMPK 471
+ FF+ G + +G+N+ + LIPKK+ A + YRPIS YK I+K+LA RL++++PK
Sbjct: 218 QSFFAKGFLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKAISKILANRLKRILPK 277
Query: 472 LLSQNQFAFTKERQIADCILLANE-VADFLSKKSEGGLMLKVDLAKAYDQVDWEFLINML 530
+ NQ AF K+R + + +LLA E V D+ +K+D++KA+D + W FL ++L
Sbjct: 278 FIVGNQSAFVKDRLLIENVLLATELVKDYHKDSISTRCAMKIDISKAFDSLQWSFLTHVL 337
Query: 531 HEMNFGDKWISWMKSCISSASLAILVNGSPTDFFSIEKGLRQGDPLSPLLFNLCLNGLSC 590
MNF ++I W+ C+S+AS +I VNG +F +GLRQG LSP LF + ++ LS
Sbjct: 338 AAMNFPGEFIHWISLCMSTASFSIQVNGELAGYFRSARGLRQGCSLSPYLFVISMDVLSR 397
Query: 591 LLNQFLGEENYCGVRISRNLTINHLLFADDTLLFCENNELQLETLCNVLITFLFASGLKV 650
+L++ G + + L + HL FADD ++ + ++ + VL F GLK+
Sbjct: 398 MLDKAAGAREFGYHPRCKTLGLTHLCFADDLMILTDGKIRSVDGIVKVLNQFAAKLGLKI 457
Query: 651 NNQKSELIGCNVQTVEVERLAHSFGWSVGTLPISYLGAPLGGNPRRIVFWNPMLEKLKCK 710
+K+ L V + ++ + + VG LP+ YLG PL ++P++++++ +
Sbjct: 458 CMEKTTLYLAGVSDHSRQLMSSRYSFGVGKLPVRYLGLPLVTKRLTTSDYSPLIDQIRRR 517
Query: 711 TRSYNSKFMSLSGRLVITKSVLCSIPLFLMVVFKAPKGVILEVEKLFHAFIWGQEQGRKK 770
+ S+++S +GRL + SVL SI F M F+ P+ I E+ ++ A +W + K
Sbjct: 518 IGMWTSRYLSFAGRLSLINSVLWSITNFWMNAFRLPRECINEINRISSALLWSGPELNPK 577
Query: 771 INWIGWDQICLNRKAGGLGLGFIEWRNRGLLLKWAWRFGREINSLWRFFVIERYNLDPDS 830
+ WD+IC +K GGLGL + N+ LK WR +SLW + R NL
Sbjct: 578 KAKVSWDEICKPKKEGGLGLQSLREANKVSSLKLIWRLLSCQDSLWVKWT--RMNLLKKE 635
Query: 831 LIWHMASTTPAMGSRAIQDIWRVLNEDHSLSAGFKENLLISIGDGSRVKFWRDPWVSNVA 890
W + T +GS IWR L + ++ F + I + +G FW D W
Sbjct: 636 SFWSI-GTHSTLGSW----IWRRLLKHREVAKSFCK---IEVNNGVNTSFWFDNWSEKGP 687
Query: 891 LCHLFPRLYA--MSENKEARIAEVGTYSRGKWGWSLTFRGQFFAWEEELYQQFLASINHI 948
L +L A M ++ +AE + R K R + EE+ Q N
Sbjct: 688 LINLTGARGAIDMGISRHMTLAEAWSRRRRK-----RHRVEILNEFEEILLQKYQHRNIE 742
Query: 949 IPAAVGGDQLIWCANQ---TGLFSVKELCYWLEDHLFT---HQMWQVPKSIAKLLPPKVA 1002
+ D ++W + FS K+ W +H+ T + W A PK +
Sbjct: 743 LE-----DAILWRGKEDVFKARFSTKDT--W--NHIRTSSNQRAWHKGVWFAH-ATPKFS 792
Query: 1003 LFFWQAQNDKIATRANLLARGIDLNGS-TQCLFCNAFDESCNHIFLHC---HSIWSLWCV 1058
W A ++++T ++ NG+ T C+FC++ E+ +H+F C IW+
Sbjct: 793 FCAWLAIRNRLSTGDRMMTWN---NGTPTTCVFCSSPMETRDHLFFQCCYSSEIWTSIAK 849
Query: 1059 IVNRERFLWVMPASLADLILEWDFLPK-ISD------KSLWSLIPYALS-WSIWIERNNI 1110
V ++RF +W + ISD +S S + +S SIW ERN+
Sbjct: 850 NVYKDRF-----------STKWSAVVNYISDSQPDRIQSFLSRYTFQVSIHSIWRERNSR 898
Query: 1111 CFNHKALNISEI 1122
K+ + S +
Sbjct: 899 RHGEKSRSASNL 910
>At3g44650 putative protein
Length = 762
Score = 272 bits (695), Expect = 1e-72
Identities = 194/682 (28%), Positives = 321/682 (46%), Gaps = 49/682 (7%)
Query: 389 PQGLTA-LI*NSFRNSGAWFEWMFEDFFSSGRISRGMNAAFITLIPKKENASSLNHYRPI 447
P G T+ S+ G F + FF+ G + +G+N+ + LIPKK + + YRPI
Sbjct: 26 PDGFTSEFFKESWEILGPEFILAIQSFFALGFLPKGVNSTILALIPKKLESKEMKDYRPI 85
Query: 448 SLIRSSYKLIAKVLATRLQKVMPKLLSQNQFAFTKERQIADCILLANE-VADFLSKKSEG 506
S YK+I+K+LA RL+ ++P+ ++ NQ +F K+R + + +LLA + V D+
Sbjct: 86 SCCNVMYKVISKILANRLKLLLPQFIAGNQSSFVKDRLLIENVLLATDLVKDYHKDSISE 145
Query: 507 GLMLKVDLAKAYDQVDWEFLINMLHEMNFGDKWISWMKSCISSASLAILVNGSPTDFFSI 566
+K+D++KA D V W FLIN L M+F + +I W++ CI++ S ++ VNG FF
Sbjct: 146 RCAIKIDISKASDSVQWSFLINTLTAMHFPEMFIHWIRLCITTPSFSVQVNGELAGFFQS 205
Query: 567 EKGLRQGDPLSPLLFNLCLNGLSCLLNQFLGEENYCGVRISRNLTINHLLFADDTLLFCE 626
+GLRQG LSP LF +C++ LS LL++ +G + + + HL FADD ++ +
Sbjct: 206 SRGLRQGCALSPYLFVICMDVLSKLLDKVVGIGRIGYHPHCKRMGLTHLSFADDLMILTD 265
Query: 627 NNELQLETLCNVLITFLFASGLKVNNQKSELIGCNVQTVEVERLAHSFGWSVGTLPISYL 686
+E + V F SGLK++ +KS + + + +L F + VG LPI YL
Sbjct: 266 GQCRSIEGIIEVFDLFSKWSGLKISMEKSTIFSAGLSSTSRAQLHTHFPFEVGELPIRYL 325
Query: 687 GAPLGGNPRRIVFWNPMLEKLKCKTRSYNSKFMSLSGRLVITKSVLCSIPLFLMVVFKAP 746
G PL V + P++E+++ + S++S+F+S +GR + S++ S F + F+ P
Sbjct: 326 GLPLVTKRLSSVDYAPLIEQIRKRIGSWSSRFLSFAGRFNLISSIIWSSCNFWLSAFQLP 385
Query: 747 KGVILEVEKLFHAFIWGQEQGRKKINWIGWDQICLNRKAGGLGLGFIEWRNRGLLLKWAW 806
+ I E+EKL +F+W K I W+Q+C + GGLGL ++ N LK W
Sbjct: 386 RACIQEIEKLCSSFLWSGTNLNSKKAKISWNQVCKPKSEGGLGLRSLKEANDVCCLKLVW 445
Query: 807 RFGREINSLWRFFVIERYNLDPDSLIWHMASTTPAMGSRAIQDIWRVLNEDHSLSAGFKE 866
R +SLW +V +NL + W + +GS IW+ + + ++ F +
Sbjct: 446 RIISHGDSLWVKWV--EHNLLKREIFW-IVKENANLGSW----IWKKILKYRGVAKRFCK 498
Query: 867 NLLISIGDGSRVKFWRDPWVSNVALCHL--FPRLYAMSENKEARIAEVGTYSRGKWGWSL 924
+G+G FW D W L + M ++ +A+ T R
Sbjct: 499 ---AEVGNGESTSFWFDDWSLLGRLIDVAGIRGTIDMGISRTMSVADAWTSRR------- 548
Query: 925 TFRGQFFAWEEELYQQFLASINHIIPAAVGGDQLIWCANQTGLFSVKELCYWLEDHLFTH 984
Q+ L +I ++ Q Q G K +D T
Sbjct: 549 ---------RRHHRQEILNTIEEVLSTQ---HQKRTQQQQQGRVLWKGKNDIYKDKFSTK 596
Query: 985 QMWQVPKSIAKLL-----------PPKVALFFWQAQNDKIATRANLLARGIDLNGSTQCL 1033
W ++ + + PK + W A +D++AT A ++ G C
Sbjct: 597 NTWNYLRTTSNEVAWHKGVWFPHATPKYSFCLWLAAHDRLATGARMIKWNRGETG--DCT 654
Query: 1034 FCNAFDESCNHIF---LHCHSI 1052
FC E+ +H+F LH S+
Sbjct: 655 FCRQGIETRDHLFFMQLHIGSL 676
>At2g14430 putative non-LTR retroelement reverse transcriptase
Length = 1277
Score = 268 bits (685), Expect = 2e-71
Identities = 156/463 (33%), Positives = 251/463 (53%), Gaps = 11/463 (2%)
Query: 424 MNAAFITLIPKKENASSLNHYRPISLIRSSYKLIAKVLATRLQKVMPKLLSQNQFAFTKE 483
+NA + LIPKK+ A+ + YRPIS YK+I+K++A RL+ ++P + QNQ AF +E
Sbjct: 651 LNATILALIPKKDEATLMRDYRPISCCNVIYKVISKIIANRLKVMLPTFILQNQSAFVRE 710
Query: 484 RQIADCILLANE-VADFLSKKSEGGLMLKVDLAKAYDQVDWEFLINMLHEMNFGDKWISW 542
R + + +LLA E V D+ +K+D++KA+D V W+FL+N L + F +K+ W
Sbjct: 711 RLLMENVLLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALKFPEKFRHW 770
Query: 543 MKSCISSASLAILVNGSPTDFFSIEKGLRQGDPLSPLLFNLCLNGLSCLLNQFLGEENYC 602
+K CIS+A+ ++ VN FF ++GLRQG LSP LF +C+N LS +++ N
Sbjct: 771 IKLCISTATFSVQVNSEQAGFFGSKRGLRQGCALSPYLFVICMNVLSHMIDVAAVHRNIG 830
Query: 603 GVRISRNLTINHLLFADDTLLFCENNELQLETLCNVLITFLFASGLKVNNQKSELIGCNV 662
+ L++ HL FADD ++F + + +E + N+ F SGL ++ +KS L V
Sbjct: 831 YHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIFKDFAGKSGLHISLEKSTLYLAEV 890
Query: 663 QTVEVERLAHSFGWSVGTLPISYLGAPLGGNPRRIVFWNPMLEKLKCKTRSYNSKFMSLS 722
+ + +F ++ G LP+ YLG PL ++P+L+K++ K S+ ++ +S +
Sbjct: 891 SELNRNNILSAFPFASGQLPVRYLGFPLLTKQMTTADYSPLLDKVRSKISSWTARSLSYA 950
Query: 723 GRLVITKSVLCSIPLFLMVVFKAPKGVILEVEKLFHAFIWGQEQGRKKINWIGWDQICLN 782
GRL + SV+ S+ F M ++ P G I E+EKL AF+W + K I W +C
Sbjct: 951 GRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGPELNPKKAKITWTSLCKL 1010
Query: 783 RKAGGLGLGFIEWRNRGLLLKWAWRFGREINSLWRFFVIERYNLDPDSLIWHMASTTPAM 842
++ GGLG+ + N+ LK WR +SLW +V Y + S W A+ ++
Sbjct: 1011 KQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNWV-WTYIIRKGS-FW-SANDRSSL 1067
Query: 843 GSRAIQDIWRVLNEDHSLSAGFKENLLISIGDGSRVKFWRDPW 885
GS +W+ L ++ K + I GS FW D W
Sbjct: 1068 GSW----MWKKLLNYRDVA---KSMCKVEIKSGSSTSFWYDNW 1103
>At3g25485 unknown protein
Length = 979
Score = 266 bits (681), Expect = 4e-71
Identities = 141/415 (33%), Positives = 237/415 (56%), Gaps = 1/415 (0%)
Query: 404 GAWFEWMFEDFFSSGRISRGMNAAFITLIPKKENASSLNHYRPISLIRSSYKLIAKVLAT 463
GA F + FF G + +G+N+ + LIPKK + YRPIS YK+I+K++A
Sbjct: 405 GAEFIVAVKSFFEKGFLPKGVNSTILALIPKKFETKEMKDYRPISCCNVIYKVISKLIAK 464
Query: 464 RLQKVMPKLLSQNQFAFTKERQIADCILLANEVA-DFLSKKSEGGLMLKVDLAKAYDQVD 522
RL++++P+ ++ NQ AF K+R + +LLA E+ D+ + +K+D++KA+D V
Sbjct: 465 RLKEILPQFIAGNQSAFVKDRLLIQNLLLATEIVKDYHKESVSDRCAIKIDISKAFDSVQ 524
Query: 523 WEFLINMLHEMNFGDKWISWMKSCISSASLAILVNGSPTDFFSIEKGLRQGDPLSPLLFN 582
W FL N+LH +NF ++I W+ CI++AS ++ VNG FF+ +GLRQG LSP LF
Sbjct: 525 WSFLENVLHSLNFSQEFIHWIMLCITTASFSVQVNGELVGFFNSSRGLRQGCSLSPYLFV 584
Query: 583 LCLNGLSCLLNQFLGEENYCGVRISRNLTINHLLFADDTLLFCENNELQLETLCNVLITF 642
+ ++ LS +L++ G + + + + + HL FADD ++ + +E + +V F
Sbjct: 585 IAMDVLSKMLDRAAGFKKFGYHPRCQTIGLTHLTFADDLMVLSDGKVRSVEGIVSVFDEF 644
Query: 643 LFASGLKVNNQKSELIGCNVQTVEVERLAHSFGWSVGTLPISYLGAPLGGNPRRIVFWNP 702
SGLK++ +KS + + + F ++VG+LP+ YLG PL + P
Sbjct: 645 AKKSGLKISMEKSTIYLAGSANMYRREIEERFKFAVGSLPVRYLGLPLVTKRFSSADYRP 704
Query: 703 MLEKLKCKTRSYNSKFMSLSGRLVITKSVLCSIPLFLMVVFKAPKGVILEVEKLFHAFIW 762
++E++K K ++ ++++S +GRL + SV+ SI F + F+ P+ I E++KL AF+W
Sbjct: 705 LVEQIKRKIGTWTARYLSYAGRLNLISSVIWSICNFWIAAFRLPRECIREIDKLCSAFLW 764
Query: 763 GQEQGRKKINWIGWDQICLNRKAGGLGLGFIEWRNRGLLLKWAWRFGREINSLWR 817
+ K + W+ IC ++ GGLGL ++ N LK WR+ +SLWR
Sbjct: 765 SGPELNSKRAKVNWEAICKPKREGGLGLRSLKEANDVSCLKLIWRWVSRGDSLWR 819
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.335 0.145 0.488
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,010,096
Number of Sequences: 26719
Number of extensions: 1220472
Number of successful extensions: 4415
Number of sequences better than 10.0: 118
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 3910
Number of HSP's gapped (non-prelim): 255
length of query: 1310
length of database: 11,318,596
effective HSP length: 111
effective length of query: 1199
effective length of database: 8,352,787
effective search space: 10014991613
effective search space used: 10014991613
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 66 (30.0 bits)
Lotus: description of TM0009.7