BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0009.6
         (309 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At2g23470 hypothetical protein                                         30  2.2
At3g17900 unknown protein                                              29  2.8
At5g03170 fasciclin-like arabinogalactan protein FLA11                 28  6.3
At3g57760 unknown protein                                              28  6.3
At1g16860 unknown protein                                              28  6.3
At4g01440 predicted protein of unknown function                        28  8.2

>At2g23470 hypothetical protein
          Length = 405

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)

Query: 92  LPPGCQSSRSGTVLLRSRCRVDPYLVPLKHTGFAFRRRSTTSAEPFCCKEGARVKNVNRT 151
           L P  Q      + ++S C  D Y + ++ +   FRR    S    C +EGA   +V  +
Sbjct: 267 LDPKAQIPTLSMMAMQSLCSDDGYFITMELSSQGFRR-IPKSGIVICLREGANSVDVITS 325

Query: 152 TINHALITRSVFINQT 167
            +    I +S+  N+T
Sbjct: 326 LLQTCYIRKSLGANRT 341


>At3g17900 unknown protein
          Length = 838

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 53/186 (28%), Positives = 69/186 (36%), Gaps = 39/186 (20%)

Query: 103 TVLLRSRCRVDPYLVPLKHTGFAFRRRSTTSAEPFCCKEG--ARVKNVNRTTINHALITR 160
           TVL  +     P +V L  T        TT   PF        RV+N  R T        
Sbjct: 686 TVLAPASFTSPPTVVSLNST-------PTTPISPFLGFSDFTERVQNEKRNT-------- 730

Query: 161 SVFINQTLVPVSLELK-DTVVRAYRTDPVQRFLYQRVPKNESHIFRPWIYKREEGKDDTV 219
           +V   Q+L P+ LE + +       ++P        VPK+       W+  R        
Sbjct: 731 TVRKQQSLPPIPLETRTENNTNGESSNPSDV-----VPKSGLGCTHLWLQSRV------- 778

Query: 220 ANPCLCVQCKSFEVIKLELLILKCYTHSLIPIQDCSIHGPPK---QFPENFLLKQPIKST 276
             P  CV  KS   IKLELL L   T  +I +    IH   K     PE   LK    S+
Sbjct: 779 --PLGCVPSKSTATIKLELLPL---TDGIITLDTLQIHAKEKGRRYIPEQ-SLKINATSS 832

Query: 277 ESEGMF 282
            S G+F
Sbjct: 833 ISSGIF 838


>At5g03170 fasciclin-like arabinogalactan protein FLA11
          Length = 246

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 20/63 (31%), Positives = 29/63 (45%), Gaps = 4/63 (6%)

Query: 1   MVKSTPRIDQRMKKIHNSKDKSNPTILGRFLPTSGGFSSTLGGSFTQISGFVLVFLLGHH 60
           ++KST   DQ    I+   + S+   L  F PT   F+S   G+   +S    V L+  H
Sbjct: 53  LLKSTQASDQ----INTQLNSSSSNGLTVFAPTDNAFNSLKSGTLNSLSDQQKVQLVQFH 108

Query: 61  HLP 63
            LP
Sbjct: 109 VLP 111


>At3g57760 unknown protein
          Length = 378

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 13/32 (40%), Positives = 17/32 (52%)

Query: 265 ENFLLKQPIKSTESEGMFREVCRLDAYYRLYK 296
           +NF   Q IK+T +        R+D YYR YK
Sbjct: 41  KNFSYDQIIKATNNFCQSNRASRIDVYYRCYK 72


>At1g16860 unknown protein
          Length = 474

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 32  PTSGGFSSTLGGSFTQISGFVLVFLLGHHHLPLTAATLSSTAIPVAAAATLASSSLFRRH 91
           P SGG +    GS   +    L+        P+T+  L+S+  P   +  L SS L + H
Sbjct: 127 PQSGGVTRQNSGSIPILPATGLIT-----SGPITSGPLNSSGAPRKVSGPLDSSGLMKSH 181

Query: 92  LP 93
           +P
Sbjct: 182 MP 183


>At4g01440 predicted protein of unknown function
          Length = 365

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 8/53 (15%)

Query: 37  FSSTLGGSFTQISGFVLVFLLGHHHLPLTAATLSSTAIPVAAAATLASSSLFR 89
           FS+ +G S TQ       FLLG   L  T+ATL+   I +  A T   + +FR
Sbjct: 78  FSALVGASLTQY-----FFLLG---LSYTSATLACAFISMTPAITFVMALIFR 122


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.323    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,993,505
Number of Sequences: 26719
Number of extensions: 289049
Number of successful extensions: 642
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 640
Number of HSP's gapped (non-prelim): 6
length of query: 309
length of database: 11,318,596
effective HSP length: 99
effective length of query: 210
effective length of database: 8,673,415
effective search space: 1821417150
effective search space used: 1821417150
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)