BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0008.9
(276 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23420 INNER NO OUTER (INO) 221 4e-58
At2g45190 unknown protein 146 1e-35
At4g00180 YABBY3 axial regulator like protein 136 1e-32
At1g69180 transcription factor CRC 112 3e-25
At2g26580 unknown protein 93 1e-19
At2g11650 F7E22.16; TNP2 protein of the Tam1 family of transposo... 33 0.22
At3g48360 unknown protein 32 0.49
At2g01880 purple acid phosphatase like protein 32 0.49
At1g22610 Highly similar to phosphoribosylanthranilate transferase 31 0.63
At1g55650 unknown protein 31 0.83
At1g16210 unknown protein 31 0.83
At4g07630 putative transposon protein 30 1.4
At3g49840 putative protein 30 1.4
At5g24480 putative protein 30 1.8
At4g20380 zinc-finger protein Lsd1 30 1.8
At5g44770 CHP-rich zinc finger protein-like 29 2.4
At4g03880 putative transposon protein 29 2.4
At5g02620 ankyrin - like protein 29 3.1
At4g23800 98b like protein 29 3.1
At5g41070 unknown protein 28 5.4
>At1g23420 INNER NO OUTER (INO)
Length = 231
Score = 221 bits (562), Expect = 4e-58
Identities = 118/200 (59%), Positives = 141/200 (70%), Gaps = 20/200 (10%)
Query: 50 STLNHLFDLPEQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVP 109
+TLNHLFDLP QIC+VQCGFCTTIL+VSVP +SLSMVVTVRCGHCTSLLSVN+MKASF+P
Sbjct: 9 TTLNHLFDLPGQICHVQCGFCTTILLVSVPFTSLSMVVTVRCGHCTSLLSVNLMKASFIP 68
Query: 110 FHLLASLTHLQVIDYLTLTNSMFIYFSCSKEDANMTFN---SHSGASMMTYSDCEEEDLI 166
HLLASL+HL T + + E+ N +S ++++ SD E+ED+
Sbjct: 69 LHLLASLSHLDE------TGKEEVAATDGVEEEAWKVNQEKENSPTTLVSSSDNEDEDVS 122
Query: 167 PMSNFVNKPPEKRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFPPTQ-- 224
+ VNKPPEKRQR PSAYN FIKEEI+RLKA+NP MAHKEAFS AAKNWA+FPP
Sbjct: 123 RVYQVVNKPPEKRQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPAHNK 182
Query: 225 --------CKGDEEGVLHPC 236
C+ D +L PC
Sbjct: 183 RAASDQCFCEEDNNAIL-PC 201
>At2g45190 unknown protein
Length = 229
Score = 146 bits (368), Expect = 1e-35
Identities = 82/171 (47%), Positives = 108/171 (62%), Gaps = 11/171 (6%)
Query: 56 FDLPEQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLAS 115
F + +CYVQC FC TIL V+VP +SL VTVRCG CT+LLSVNM ++L +
Sbjct: 19 FSPSDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRS------YVLPA 72
Query: 116 LTHLQV-IDYLTLTNSMFIYFSCSKEDANMTF---NSHSGAS-MMTYSDCEEEDLIPMSN 170
LQ+ + + N I +NM N H + + ++ D ++ IP +
Sbjct: 73 SNQLQLQLGPHSYFNPQDILEELRDAPSNMNMMMMNQHPTMNDIPSFMDLHQQHEIPKAP 132
Query: 171 FVNKPPEKRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFP 221
VN+PPEKRQR PSAYNRFIKEEI+R+KA NPD++H+EAFS AAKNWA+FP
Sbjct: 133 PVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFP 183
>At4g00180 YABBY3 axial regulator like protein
Length = 240
Score = 136 bits (343), Expect = 1e-32
Identities = 82/177 (46%), Positives = 106/177 (59%), Gaps = 11/177 (6%)
Query: 56 FDLPEQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNM-MKASFVPFHLLA 114
F +Q+CYV C FC T+L VSVP SSL VTVRCGHC++LLSV + M+A +P
Sbjct: 19 FSSTDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVSNL 78
Query: 115 SLTHLQVIDYLTLTNSMFIYFSCSKE-DANMTFNSHSGAS-------MMTYSDCEEEDL- 165
+ L N + S + + NM + H+ A M T + + L
Sbjct: 79 GHSFLPPPPPPPPPNLLEEMRSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQ 138
Query: 166 -IPMSNFVNKPPEKRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFP 221
+P N+PPEKRQR PSAYNRFIKEEI+R+KA NPD++H+EAFS AAKNWA+FP
Sbjct: 139 EMPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFP 195
>At1g69180 transcription factor CRC
Length = 181
Score = 112 bits (279), Expect = 3e-25
Identities = 71/178 (39%), Positives = 93/178 (51%), Gaps = 24/178 (13%)
Query: 45 QKDTMSTLNHLFDLPEQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMK 104
+K TM T + E + YV+C C TIL V +P + VTV+CGHC +L
Sbjct: 5 EKPTM-TASRASPQAEHLYYVRCSICNTILAVGIPLKRMLDTVTVKCGHCGNL------- 56
Query: 105 ASFVPFHLLASLTHLQVIDYLTLTNSMFIYFSCSKEDANMTFNSHSGASMMTYSDCEEED 164
L + LQ LTL F K S S +S T SD +
Sbjct: 57 ------SFLTTTPPLQGHVSLTLQMQSFGGSDYKK-------GSSSSSSSSTSSD---QP 100
Query: 165 LIPMSNFVNKPPEKRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFPP 222
P FV KPPEK+QR PSAYNRF+++EI+R+K+ NP++ H+EAFS AAKNWA + P
Sbjct: 101 PSPSPPFVVKPPEKKQRLPSAYNRFMRDEIQRIKSANPEIPHREAFSAAAKNWAKYIP 158
>At2g26580 unknown protein
Length = 114
Score = 93.2 bits (230), Expect = 1e-19
Identities = 41/56 (73%), Positives = 49/56 (87%)
Query: 166 IPMSNFVNKPPEKRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFP 221
I VN+PPEKRQR PSAYN+FIKEEI+R+KA NPD++H+EAFSTAAKNWA+FP
Sbjct: 42 ITEQRIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 97
>At2g11650 F7E22.16; TNP2 protein of the Tam1 family of transposons
[Antirrhinum majus]
Length = 346
Score = 32.7 bits (73), Expect = 0.22
Identities = 17/44 (38%), Positives = 23/44 (51%), Gaps = 4/44 (9%)
Query: 173 NKPPEKRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKN 216
N+P KR+ TPS Y +F+KE LK E HKE ++
Sbjct: 39 NRPRRKREPTPSEYYQFLKE----LKFEGTRYPHKETMQELGRD 78
>At3g48360 unknown protein
Length = 364
Score = 31.6 bits (70), Expect = 0.49
Identities = 32/129 (24%), Positives = 60/129 (45%), Gaps = 11/129 (8%)
Query: 1 MIDYECPSSTINASFSLCQSKVLHHLSITS----FSSSFTHTYSHPHIQKDTMSTLNHLF 56
++ P++T + FSL K+ ++L+ TS +S +H + L ++
Sbjct: 5 LVAMSVPATTEDDGFSLITDKLSYNLTPTSDVEIVTSDNRRIPAHSGVLASASPVLMNIM 64
Query: 57 DLPEQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASL 116
P + Y CG I ++ VPC ++S V ++ + +SL M + HLLA L
Sbjct: 65 KKPMRR-YRGCGSKRVIKILGVPCDAVS--VFIKFLYSSSLTEDEMERYG---IHLLA-L 117
Query: 117 THLQVIDYL 125
+H+ ++ L
Sbjct: 118 SHVYMVTQL 126
>At2g01880 purple acid phosphatase like protein
Length = 328
Score = 31.6 bits (70), Expect = 0.49
Identities = 14/26 (53%), Positives = 18/26 (68%), Gaps = 1/26 (3%)
Query: 30 SFSSSFTHTYSHPHIQKDTMSTL-NH 54
SF +SF+H Y+HP +QK S L NH
Sbjct: 95 SFEASFSHIYTHPSLQKQWYSVLGNH 120
>At1g22610 Highly similar to phosphoribosylanthranilate transferase
Length = 1029
Score = 31.2 bits (69), Expect = 0.63
Identities = 17/65 (26%), Positives = 28/65 (42%), Gaps = 1/65 (1%)
Query: 170 NFVNKPPEKRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFPPTQCKGDE 229
+FV+ PP+ ++ RF +E + + +N + H E F N PT+ K E
Sbjct: 135 DFVSPPPDFAEKVMKEDKRFESQEFQ-FQNQNQNQNHYEQFEDEINNMETLKPTKKKEKE 193
Query: 230 EGVLH 234
H
Sbjct: 194 SRTFH 198
>At1g55650 unknown protein
Length = 337
Score = 30.8 bits (68), Expect = 0.83
Identities = 17/29 (58%), Positives = 21/29 (71%), Gaps = 3/29 (10%)
Query: 173 NKPPEKRQRTPSAYNRFIKEEIKRLKAEN 201
+KPP KRQRT YN F+ E+ R+KAEN
Sbjct: 212 HKPP-KRQRT--GYNFFVAEQSVRIKAEN 237
>At1g16210 unknown protein
Length = 234
Score = 30.8 bits (68), Expect = 0.83
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 172 VNKPPEKRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFP 221
V++ PEKR + +++ + + E+ RLK+E P + H + K W P
Sbjct: 173 VDRHPEKRLK--ASFKAYEEVELPRLKSEKPGLTHTQYKDLIWKMWKKSP 220
>At4g07630 putative transposon protein
Length = 538
Score = 30.0 bits (66), Expect = 1.4
Identities = 15/35 (42%), Positives = 20/35 (56%), Gaps = 4/35 (11%)
Query: 173 NKPPEKRQRTPSAYNRFIKEEIKRLKAENPDMAHK 207
N+P KR+ TPS Y +++KE LK E HK
Sbjct: 49 NRPRRKREPTPSEYYQYLKE----LKFEGTSYPHK 79
>At3g49840 putative protein
Length = 651
Score = 30.0 bits (66), Expect = 1.4
Identities = 20/84 (23%), Positives = 35/84 (40%), Gaps = 9/84 (10%)
Query: 176 PEKRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFPPTQCKGDEEGVLHP 235
P +TP + KEE+++ E+ + A KE S+ + + +G E V
Sbjct: 441 PSSFHKTPEGRRKLTKEELQKFTKESTENALKELVSSPEEGSSGSEKQAARGTSEPV--- 497
Query: 236 CITSMCGTFRSMKKDKVSEEERSQ 259
G KK +V +ER++
Sbjct: 498 ------GECTKKKKQRVRYKERNK 515
>At5g24480 putative protein
Length = 350
Score = 29.6 bits (65), Expect = 1.8
Identities = 15/43 (34%), Positives = 24/43 (54%), Gaps = 4/43 (9%)
Query: 42 PHIQKDTMSTLNHLFDLPEQICYVQCGFCTTILMVSVPCSSLS 84
PH+ + ++ + L + YV CT+ LM+SVP +SLS
Sbjct: 56 PHLFRSKSDPISSITTLTSDLFYV----CTSSLMISVPTTSLS 94
>At4g20380 zinc-finger protein Lsd1
Length = 184
Score = 29.6 bits (65), Expect = 1.8
Identities = 15/42 (35%), Positives = 20/42 (46%), Gaps = 6/42 (14%)
Query: 61 QICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNM 102
Q+ + CG C T LM SS V+C C + +VNM
Sbjct: 89 QVAQINCGHCRTTLMYPYGASS------VKCAVCQFVTNVNM 124
Score = 28.1 bits (61), Expect = 5.4
Identities = 18/63 (28%), Positives = 24/63 (37%), Gaps = 23/63 (36%)
Query: 59 PEQICYVQCGFCTTILMV-----SVPCSSL------------------SMVVTVRCGHCT 95
P + ++ CG C T+LM SV CS S V + CGHC
Sbjct: 40 PHDMAHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCR 99
Query: 96 SLL 98
+ L
Sbjct: 100 TTL 102
>At5g44770 CHP-rich zinc finger protein-like
Length = 541
Score = 29.3 bits (64), Expect = 2.4
Identities = 20/88 (22%), Positives = 31/88 (34%), Gaps = 18/88 (20%)
Query: 4 YECPSSTINASFSLCQSKVLHHLSITSFSSSFTHTYSHPHIQKDTMSTLNHLFDLPEQIC 63
YEC S C+ + + + +S S F H HPH T+
Sbjct: 350 YECHDK------SSCRGNIKYDIRCSSISEPFHHDDLHPHPLYWTLEETK---------- 393
Query: 64 YVQCGFCTTILMVSVPCSSLSMVVTVRC 91
QC C T ++ + C + +RC
Sbjct: 394 --QCKACGTEILKPLSCLVCEYALCIRC 419
>At4g03880 putative transposon protein
Length = 531
Score = 29.3 bits (64), Expect = 2.4
Identities = 15/36 (41%), Positives = 20/36 (54%), Gaps = 4/36 (11%)
Query: 173 NKPPEKRQRTPSAYNRFIKEEIKRLKAENPDMAHKE 208
N+P KR+ TPS Y +++ E LK E HKE
Sbjct: 146 NRPKRKREPTPSEYYQYLME----LKFEGTRYPHKE 177
>At5g02620 ankyrin - like protein
Length = 524
Score = 28.9 bits (63), Expect = 3.1
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 86 VVTVRCGHCTSLLSVNMMKASFVPFHLLASLTHLQVIDYLTLTN-SMFIYFSCSKEDANM 144
+V + H S+L+ K F FH+ A +LQV+D L N + F SK A
Sbjct: 71 MVKILMKHSDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFTFDSSKTTALH 130
Query: 145 TFNSHSGASMMTY 157
T S ++ +
Sbjct: 131 TAASQGHGEIVCF 143
>At4g23800 98b like protein
Length = 456
Score = 28.9 bits (63), Expect = 3.1
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 143 NMTFNSHSGASMMTYSDCEEEDLIPMSNFVNKPPEKRQRTPSAYNRFIKEEIKRLKAENP 202
NMTF G S +T ++ E+ + K + +R S+Y + K++ +K ENP
Sbjct: 109 NMTFAC--GQSSLTQAEQEKAN-----KKKKKDCPETKRPSSSYVLWCKDQWTEVKKENP 161
Query: 203 DMAHKEAFSTAAKNWANFPPTQCKGDEE 230
+ KE + W + K EE
Sbjct: 162 EADFKETSNILGAKWKSLSAEDKKPYEE 189
>At5g41070 unknown protein
Length = 393
Score = 28.1 bits (61), Expect = 5.4
Identities = 35/147 (23%), Positives = 64/147 (42%), Gaps = 19/147 (12%)
Query: 69 FCTTILMVSVPCSSLSM-VVTVRCGHCTSLLSVNMMKASFVPFHLLASLTHLQVIDYLTL 127
+C+T+ + +S+ V++ R + L+ ++ + + +LL H +D
Sbjct: 49 YCSTLRQAEHAAAEVSLNVLSSRVP--SKSLTAKILDETGIYKNLLQETAHRAGLDLPMY 106
Query: 128 TNSM-----FIYFSCSKEDANMTFNSHSGASMMTYSDCEE-------EDLIPMSNFVNKP 175
T+ F FSC+ E A MTF +G S T E+ L MS+ ++
Sbjct: 107 TSVRSGSCHFPGFSCTVELAGMTF---TGESAKTKKQAEKNAAIAAWSSLKKMSSLDSQD 163
Query: 176 PEKRQRTPS-AYNRFIKEEIKRLKAEN 201
EK Q + +RF +E++R + N
Sbjct: 164 EEKEQEAVARVLSRFKPKEVRRRETTN 190
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.319 0.129 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,377,469
Number of Sequences: 26719
Number of extensions: 261259
Number of successful extensions: 785
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 759
Number of HSP's gapped (non-prelim): 33
length of query: 276
length of database: 11,318,596
effective HSP length: 98
effective length of query: 178
effective length of database: 8,700,134
effective search space: 1548623852
effective search space used: 1548623852
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0008.9