BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0007.12
(1387 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11970 hypothetical protein 974 0.0
At1g36590 hypothetical protein 969 0.0
At1g35370 hypothetical protein 882 0.0
At2g10780 pseudogene 651 0.0
At2g04670 putative retroelement pol polyprotein 595 e-170
At2g14650 putative retroelement pol polyprotein 582 e-166
At4g10580 putative reverse-transcriptase -like protein 471 e-132
At2g06890 putative retroelement integrase 441 e-123
At3g31970 hypothetical protein 396 e-110
At2g07660 putative retroelement pol polyprotein 371 e-102
At2g05610 putative retroelement pol polyprotein 348 1e-95
At4g07850 putative polyprotein 347 3e-95
At4g16910 retrotransposon like protein 329 8e-90
At4g08100 putative polyprotein 269 9e-72
At4g03650 putative reverse transcriptase 267 3e-71
At2g14640 putative retroelement pol polyprotein 253 7e-67
At4g07830 putative reverse transcriptase 244 2e-64
At1g20390 hypothetical protein 209 1e-53
At4g04230 putative transposon protein 191 2e-48
At2g14040 putative retroelement pol polyprotein 173 7e-43
>At3g11970 hypothetical protein
Length = 1499
Score = 974 bits (2517), Expect = 0.0
Identities = 542/1347 (40%), Positives = 783/1347 (57%), Gaps = 46/1347 (3%)
Query: 56 KLQLTSFDGSKPLEWLFHAEQFFQLHQTPPAQRLELVSFYMQGDALSWYR-WMHNNYQLS 114
K+ FDG++ EWLF E+FF + TP ++++ + + A +W++ ++ + L
Sbjct: 111 KIDFPRFDGTRLKEWLFKVEEFFGVDSTPEDMKVKMAAIHFDSHASTWHQSFIQSGVGLE 170
Query: 115 F---WEAFTRALAIRFGPSAYENHQQELFKLQQTSTVAEYQTRFEKVSNQVVGLSPEAVL 171
W+ + + L RF ++ EL LQ+T + +Y +FE + +V LS E ++
Sbjct: 171 VLYDWKGYVKLLKERFEDDC-DDPMAELKHLQETDGIIDYHQKFELIKTRV-NLSEEYLV 228
Query: 172 DCFISGLVPEIKRELAILKPYSVSQAIGIAKQIEAKIKESRSSQQRVFRPNQSHFTSPST 231
+++GL + + + + +P +V + + K E + + N+S +P+
Sbjct: 229 SVYLAGLRTDTQMHVRMFQPQTVRHCLFLGKTYEKA--HPKKPANTTWSTNRS---APTG 283
Query: 232 AIVPSQPRPLASSSQAP-----KPVASSSLPIKRLNSAQMQERRALGLCFNCDEKYTIGH 286
Q + + KPV+ K+++ +M +RR+ GLC+ CDEKYT H
Sbjct: 284 GYNKYQKEGESKTDHYGNKGNFKPVSQQP---KKMSQQEMSDRRSKGLCYFCDEKYTPEH 340
Query: 287 KCQPRLFLLMLADEVQETQEAAISLLSDTVEDVTVPVHEEAMHFQLSDQALHGRPSPRTL 346
+ L D +E ++A L++D +D +P Q+S A+ G +T+
Sbjct: 341 YLVHKKTQLFRMDVDEEFEDAREELVND--DDEHMP--------QISVNAVSGIAGYKTM 390
Query: 347 KFTAIVNGHPVVVLVDTGSSNNFVPPRTVSFLHLKVTPIPTFPVMVGNGAHIPCAGYIPD 406
+ + + +L+D+GS++NF+ P T + L KV V V +G + G + D
Sbjct: 391 RVKGTYDKKIIFILIDSGSTHNFLDPNTAAKLGCKVDTAGLTRVSVADGRKLRVEGKVTD 450
Query: 407 IEVTFAGNTFHIPFYVMDLQGADFVLGLDWLKTLGKVISDFSIPSMSFVVNGKTCTLEGE 466
TF ++ LQG D VLG+ WL+TLG++ +F M F N + L G
Sbjct: 451 FSWKLQTTTFQSDILLIPLQGIDMVLGVQWLETLGRISWEFKKLEMRFKFNNQKVLLHGL 510
Query: 467 PLPPPSHASFNHFQRLIHTDAIAECHTITFLPSPPSTPSPQFLTLENLSTPPPDFDPALW 526
Q+L + S + L N T + +
Sbjct: 511 TSGSVREVKAQKLQKLQED----QVQLAMLCVQEVSESTEGELCTINALTSELGEESVVE 566
Query: 527 ELLQSYAPVFSTPHGLPPTRF-HDHHINLLPNTPPVNVRPYRYPHSQKEAMATILTDMLQ 585
E+L Y +F P LPP R H+H I LL + PVN RPYRY QK + ++ D+L
Sbjct: 567 EVLNEYPDIFIEPTALPPFREKHNHKIKLLEGSNPVNQRPYRYSIHQKNEIDKLVEDLLT 626
Query: 586 EGIVVPSTSPYSSPVLLIKKKDGTWRFCVDFRSLNSITIKDRFPIPTIDELLDELGGASH 645
G V S+SPY+SPV+L+KKKDGTWR CVD+R LN +T+KD FPIP I++L+DELGGA
Sbjct: 627 NGTVQASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIEDLMDELGGAVI 686
Query: 646 FSKLDLRSGFHQIRLATEDTHKTAFRTVDGHYEFLVMPFGLTNAPSTFQAAMNDLLRPFL 705
FSK+DLR+G+HQ+R+ +D KTAF+T GH+E+LVMPFGLTNAP+TFQ MN + +PFL
Sbjct: 687 FSKIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATFQGLMNFIFKPFL 746
Query: 706 RRFVLVFFDDILVYSPSLSAHMTHLKEVLEVLLSHKFYAKLSKCIFGVTSVSYLGHIISA 765
R+FVLVFFDDILVYS SL H HLK+V EV+ ++K +AKLSKC F V V YLGH ISA
Sbjct: 747 RKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAVPKVEYLGHFISA 806
Query: 766 NGVGPDPSKVQAIVDWPVPRNLTALRGFLGLTGFYRRFIKNYAAHASHLTDLLKQDQKDK 825
G+ DP+K++A+ +WP P L LRGFLGL G+YRRF++++ A L L K D +
Sbjct: 807 QGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGPLHALTKTDAFE- 865
Query: 826 HTLLPWSSAAADSFQHLKDLIISAPVLVLPDFSATFDIETDASGTAVGAVLSQKGHPISF 885
W++ A +F+ LK + APVL LP F F +ETDA G +GAVL Q+GHP+++
Sbjct: 866 -----WTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQEGHPLAY 920
Query: 886 FSKKLTLQMQHQSTYVREMYAVTEAVKKWRQYLIGHKFRIYTDQQSLKHLMTQTFQTPDQ 945
S++L + H S Y +E+ AV AV+KWR YL+ F I TDQ+SLK+L+ Q TP Q
Sbjct: 921 ISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLKYLLEQRLNTPIQ 980
Query: 946 IKWATKLLGFDYEIFYKPGSENRVADALSRCHSSELPLLAAISSPVPEIITQLKQYYKTP 1005
+W KLL FDYEI Y+ G EN VADALSR SE+ L A++ +++ ++ Y
Sbjct: 981 QQWLPKLLEFDYEIQYRQGKENVVADALSRVEGSEV-LHMAMTVVECDLLKDIQAGYAND 1039
Query: 1006 EGIQLIV-----DKSTLPHFRVHHEVLYFKDGLFVPEHDQWRTSILSEYHASPAAGHSGL 1060
+Q I+ D + +F +L K + VP +D + +IL H S GHSG
Sbjct: 1040 SQLQDIITALQRDPDSKKYFSWSQNILRRKSKIVVPANDNIKNTILLWLHGSGVGGHSGR 1099
Query: 1061 KPTLARLMASFNWPGIQTETKTFIKQCLPCQYNKYVPAKKSGLLQPLPTPAQIWEDISMD 1120
T R+ F W G+ + + +I+ C CQ K PA GLLQPLP P IW ++SMD
Sbjct: 1100 DVTHQRVKGLFYWKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPLPIPDTIWSEVSMD 1159
Query: 1121 FITGLPPSHGHTVAWVIVDRLSKYAHFVALPANFTATSLANRFSSEICRLHGIPRSIVSD 1180
FI GLP S G TV V+VDRLSK AHF+AL ++A ++A+ + + +LHG P SIVSD
Sbjct: 1160 FIEGLPVSGGKTVIMVVVDRLSKAAHFIALSHPYSALTVAHAYLDNVFKLHGCPTSIVSD 1219
Query: 1181 RDKIFLSHFWRDLFRVYGTKLRFSTAYHPETDGQTEVVNRGLETYLRCFAGEQPRSWYKF 1240
RD +F S FWR+ F + G L+ ++AYHP++DGQTEVVNR LETYLRC ++P+ W K+
Sbjct: 1220 RDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDRPQLWSKW 1279
Query: 1241 LHLAELWYNTSFHSAAGMTPFQAVYGRPPPSLLAYVPGSSAIQSLDESLQQRT*ILESLK 1300
L LAE WYNT++HS++ MTPF+ VYG+ PP L Y+PG S + + SLQ+R +L LK
Sbjct: 1280 LALAEYWYNTNYHSSSRMTPFEIVYGQVPPVHLPYLPGESKVAVVARSLQEREDMLLFLK 1339
Query: 1301 ANLQRAQHRMKIQKDKSRREVTFEENAWVLLRLQPYRQRSLAHRLSNKLAKRFYGPFRVK 1360
+L RAQHRMK D+ R E FE +V ++LQPYRQ+S+ R + KL+ +++GP+++
Sbjct: 1340 FHLMRAQHRMKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPKYFGPYKII 1399
Query: 1361 RRIGSVAYELDLPPTSKLHNVFHVSLL 1387
R G VAY+L LP S++H VFHVS L
Sbjct: 1400 DRCGEVAYKLALPSYSQVHPVFHVSQL 1426
>At1g36590 hypothetical protein
Length = 1499
Score = 969 bits (2504), Expect = 0.0
Identities = 541/1343 (40%), Positives = 782/1343 (57%), Gaps = 38/1343 (2%)
Query: 56 KLQLTSFDGSKPLEWLFHAEQFFQLHQTPPAQRLELVSFYMQGDALSWYR-WMHNNYQLS 114
K+ FDG++ EWLF E+FF + TP ++++ + + A +W++ ++ + L
Sbjct: 111 KIDFPRFDGTRLKEWLFKVEEFFGVDSTPEDMKVKMAAIHFDSHASTWHQSFIQSGVGLE 170
Query: 115 F---WEAFTRALAIRFGPSAYENHQQELFKLQQTSTVAEYQTRFEKVSNQVVGLSPEAVL 171
W+ + + L RF ++ EL LQ+T + +Y +FE + +V LS E ++
Sbjct: 171 VLYDWKGYVKLLKERFEDDC-DDPMAELKHLQETDGIIDYHQKFELIKTRV-NLSEEYLV 228
Query: 172 DCFISGLVPEIKRELAILKPYSVSQAIGIAKQIE-AKIKESRSSQQRVFRPNQSHFTSPS 230
+++GL + + + + +P +V + + K E A +K+ ++ R + +
Sbjct: 229 SVYLAGLRTDTQMHVRMFQPQTVRHCLFLGKTYEKAHLKKPANTTWSTNRSAPTGGYNKY 288
Query: 231 TAIVPSQPRPLASSSQAPKPVASSSLPIKRLNSAQMQERRALGLCFNCDEKYTIGHKCQP 290
S+ + KPV+ K+++ +M +RR+ GLC+ CDEKYT H
Sbjct: 289 QKEGESKTDHYGNKGNF-KPVSQQP---KKMSQQEMSDRRSKGLCYFCDEKYTPEHYLVH 344
Query: 291 RLFLLMLADEVQETQEAAISLLSDTVEDVTVPVHEEAMHFQLSDQALHGRPSPRTLKFTA 350
+ L D +E ++A L++D +D +P Q+S A+ G +T++
Sbjct: 345 KKTQLFRMDVDEEFEDAREELVND--DDEHMP--------QISVNAVSGIAGYKTMRVKG 394
Query: 351 IVNGHPVVVLVDTGSSNNFVPPRTVSFLHLKVTPIPTFPVMVGNGAHIPCAGYIPDIEVT 410
+ + +L+D+GS++NF+ P T + L KV V V +G + G + D
Sbjct: 395 TYDKKIIFILIDSGSTHNFLDPNTAAKLGCKVDTAGLTRVSVADGRKLRVEGKVTDFSWK 454
Query: 411 FAGNTFHIPFYVMDLQGADFVLGLDWLKTLGKVISDFSIPSMSFVVNGKTCTLEGEPLPP 470
TF ++ LQG D VLG+ WL+TLG++ +F M F N + L G
Sbjct: 455 LQTTTFQSDILLIPLQGIDMVLGVQWLETLGRISWEFKKLEMRFKFNNQKVLLHGLTSGS 514
Query: 471 PSHASFNHFQRLIHTDAIAECHTITFLPSPPSTPSPQFLTLENLSTPPPDFDPALWELLQ 530
Q+L + S + L N T + + E+L
Sbjct: 515 VREVKAQKLQKLQED----QVQLAMLCVQEVSESTEGELCTINALTSELGEESVVEEVLN 570
Query: 531 SYAPVFSTPHGLPPTRF-HDHHINLLPNTPPVNVRPYRYPHSQKEAMATILTDMLQEGIV 589
Y +F P LPP R H+H I LL + PVN RPYRY QK + ++ D+L G V
Sbjct: 571 EYPDIFIEPTALPPFREKHNHKIKLLEGSNPVNQRPYRYSIHQKNEIDKLVEDLLTNGTV 630
Query: 590 VPSTSPYSSPVLLIKKKDGTWRFCVDFRSLNSITIKDRFPIPTIDELLDELGGASHFSKL 649
S+SPY+SPV+L+KKKDGTWR CVD+R LN +T+KD FPIP I++L+DELGGA FSK+
Sbjct: 631 QASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIEDLMDELGGAVIFSKI 690
Query: 650 DLRSGFHQIRLATEDTHKTAFRTVDGHYEFLVMPFGLTNAPSTFQAAMNDLLRPFLRRFV 709
DLR+G+HQ+R+ +D KTAF+T GH+E+LVMPFGLTNAP+TFQ MN + +PFLR+FV
Sbjct: 691 DLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATFQGLMNFIFKPFLRKFV 750
Query: 710 LVFFDDILVYSPSLSAHMTHLKEVLEVLLSHKFYAKLSKCIFGVTSVSYLGHIISANGVG 769
LVFFDDILVYS SL H HLK+V EV+ ++K +AKLSKC F V V YLGH ISA G+
Sbjct: 751 LVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAVPKVEYLGHFISAQGIE 810
Query: 770 PDPSKVQAIVDWPVPRNLTALRGFLGLTGFYRRFIKNYAAHASHLTDLLKQDQKDKHTLL 829
DP+K++A+ +WP P L LRGFLGL G+YRRF++++ A L L K D +
Sbjct: 811 TDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGPLHALTKTDAFE----- 865
Query: 830 PWSSAAADSFQHLKDLIISAPVLVLPDFSATFDIETDASGTAVGAVLSQKGHPISFFSKK 889
W++ A +F+ LK + APVL LP F F +ETDA G +GAVL Q+GHP+++ S++
Sbjct: 866 -WTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQEGHPLAYISRQ 924
Query: 890 LTLQMQHQSTYVREMYAVTEAVKKWRQYLIGHKFRIYTDQQSLKHLMTQTFQTPDQIKWA 949
L + H S Y +E+ AV AV+KWR YL+ F I TDQ+SLK+L+ Q TP Q +W
Sbjct: 925 LKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLKYLLEQRLNTPIQQQWL 984
Query: 950 TKLLGFDYEIFYKPGSENRVADALSRCHSSELPLLAAISSPVPEIITQLKQYYKTPEGIQ 1009
KLL FDYEI Y+ G EN VADALSR SE+ L A++ +++ ++ Y +Q
Sbjct: 985 PKLLEFDYEIQYRQGKENVVADALSRVEGSEV-LHMAMTVVECDLLKDIQAGYANDSQLQ 1043
Query: 1010 LIV-----DKSTLPHFRVHHEVLYFKDGLFVPEHDQWRTSILSEYHASPAAGHSGLKPTL 1064
I+ D + +F +L K + VP +D + +IL H S GHSG T
Sbjct: 1044 DIITALQRDPDSKKYFSWSQNILRRKSKIVVPANDNIKNTILLWLHGSGVGGHSGRDVTH 1103
Query: 1065 ARLMASFNWPGIQTETKTFIKQCLPCQYNKYVPAKKSGLLQPLPTPAQIWEDISMDFITG 1124
R+ F G+ + + +I+ C CQ K PA GLLQPLP P IW ++SMDFI G
Sbjct: 1104 QRVKGLFYSKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPLPIPDTIWSEVSMDFIEG 1163
Query: 1125 LPPSHGHTVAWVIVDRLSKYAHFVALPANFTATSLANRFSSEICRLHGIPRSIVSDRDKI 1184
LP S G TV V+VDRLSK AHF+AL ++A ++A + + +LHG P SIVSDRD +
Sbjct: 1164 LPVSGGKTVIMVVVDRLSKAAHFIALSHPYSALTVAQAYLDNVFKLHGCPTSIVSDRDVV 1223
Query: 1185 FLSHFWRDLFRVYGTKLRFSTAYHPETDGQTEVVNRGLETYLRCFAGEQPRSWYKFLHLA 1244
F S FWR+ F + G L+ ++AYHP++DGQTEVVNR LETYLRC ++P+ W K+L LA
Sbjct: 1224 FTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDRPQLWSKWLALA 1283
Query: 1245 ELWYNTSFHSAAGMTPFQAVYGRPPPSLLAYVPGSSAIQSLDESLQQRT*ILESLKANLQ 1304
E WYNT++HS++ MTPF+ VYG+ PP L Y+PG S + + SLQ+R +L LK +L
Sbjct: 1284 EYWYNTNYHSSSRMTPFEIVYGQVPPVHLPYLPGESKVAVVARSLQEREDMLLFLKFHLM 1343
Query: 1305 RAQHRMKIQKDKSRREVTFEENAWVLLRLQPYRQRSLAHRLSNKLAKRFYGPFRVKRRIG 1364
RAQHRMK D+ R E FE +V ++LQPYRQ+S+ R + KL+ +++GP+++ R G
Sbjct: 1344 RAQHRMKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPKYFGPYKIIDRCG 1403
Query: 1365 SVAYELDLPPTSKLHNVFHVSLL 1387
VAY+L LP S++H VFHVS L
Sbjct: 1404 EVAYKLALPSYSQVHPVFHVSQL 1426
>At1g35370 hypothetical protein
Length = 1447
Score = 882 bits (2280), Expect = 0.0
Identities = 511/1323 (38%), Positives = 748/1323 (55%), Gaps = 74/1323 (5%)
Query: 56 KLQLTSFDGSKPLEWLFHAEQFFQLHQTPPAQRLELVSFYMQGDALSWYR-WMHNNYQLS 114
K+ FDGS+ EWLF E+FF + TP ++++V+ + A +W+ ++ + L
Sbjct: 116 KIDFPRFDGSRINEWLFKVEEFFGVDFTPEEMKVKMVAIHFDSHAATWHHSFIQSGIGLD 175
Query: 115 F---WEAFTRALAIRFGPSAYENHQQELFKLQQTSTVAEYQTRFEKVSNQVVGLSPEAVL 171
W + + L RF A ++ EL KLQ+T + EY +FE + ++ LS E ++
Sbjct: 176 VFFNWPEYVKLLKDRF-EDACDDPMAELKKLQETDGIVEYHQQFELIKVRL-NLSEEYLV 233
Query: 172 DCFISGLVPEIKRELAILKPYSVSQAIGIAKQIEAKIKESRSSQQRVFRPNQSHFTSPST 231
+++GL + + + + +P +V + + K E
Sbjct: 234 SVYLAGLRTDTQMHVRMFEPKTVRDCLRLGKYYER------------------------- 268
Query: 232 AIVPSQPRPLASSSQAPKPVAS--SSLPIKRLNSAQMQERRALGLCFNCDEKYTIGHKCQ 289
+ P+ SS+ + K S S P+K + Q+ LGLC+ CDEK+T H
Sbjct: 269 ----AHPKKTVSSTWSQKGTRSGGSYRPVKEVE----QKSDHLGLCYFCDEKFTPEHYLV 320
Query: 290 PRLFLLMLADEVQETQEAAISLLSDTVEDVTVPVHEEAMHFQLSDQALHGRPSPRTLKFT 349
+ L D V E E A+ +LSD +D HE+ Q+S A+ G +T+
Sbjct: 321 HKKTQLFRMD-VDEEFEDAVEVLSD--DD-----HEQKPMPQISVNAVSGISGYKTMGVK 372
Query: 350 AIVNGHPVVVLVDTGSSNNFVPPRTVSFLHLKVTPIPTFPVMVGNGAHIPCAGYIPDIEV 409
V+ + +L+D+GS++NF+ + L V V V +G + G I
Sbjct: 373 GTVDKRDLFILIDSGSTHNFIDSTVAAKLGCHVESAGLTKVAVADGRKLNVDGQIKGFTW 432
Query: 410 TFAGNTFHIPFYVMDLQGADFVLGLDWLKTLGKVISDFSIPSMSFVVNGKTCTLEGEPLP 469
TF ++ LQG D VLG+ WL+TLG++ +F M F + L G
Sbjct: 433 KLQSTTFQSDILLIPLQGVDMVLGVQWLETLGRISWEFKKLEMQFFYKNQRVWLHGIITG 492
Query: 470 PPSHASFNHFQRLIHTDAIAECHTITFLPSPPSTPSPQFLTLENLSTPPPDFDPALWELL 529
+ Q+ T A + + S + ++ L++ + + + ++
Sbjct: 493 SVRDIKAHKLQK---TQADQIQLAMVCVREVVSDEEQEIGSISALTSDVVE-ESVVQNIV 548
Query: 530 QSYAPVFSTPHGLPPTRF-HDHHINLLPNTPPVNVRPYRYPHSQKEAMATILTDMLQEGI 588
+ + VF+ P LPP R HDH I LL PVN RPYRY QK+ + I+ DM++ G
Sbjct: 549 EEFPDVFAEPTDLPPFREKHDHKIKLLEGANPVNQRPYRYVVHQKDEIDKIVQDMIKSGT 608
Query: 589 VVPSTSPYSSPVLLIKKKDGTWRFCVDFRSLNSITIKDRFPIPTIDELLDELGGASHFSK 648
+ S+SP++SPV+L+KKKDGTWR CVD+ LN +T+KDRF IP I++L+DELGG+ FSK
Sbjct: 609 IQVSSSPFASPVVLVKKKDGTWRLCVDYTELNGMTVKDRFLIPLIEDLMDELGGSVVFSK 668
Query: 649 LDLRSGFHQIRLATEDTHKTAFRTVDGHYEFLVMPFGLTNAPSTFQAAMNDLLRPFLRRF 708
+DLR+G+HQ+R+ +D KTAF+T +GH+E+LVM FGLTNAP+TFQ+ MN + R FLR+F
Sbjct: 669 IDLRAGYHQVRMDPDDIQKTAFKTHNGHFEYLVMLFGLTNAPATFQSLMNSVFRDFLRKF 728
Query: 709 VLVFFDDILVYSPSLSAHMTHLKEVLEVLLSHKFYAKLSKCIFGVTSVSYLGHIISANGV 768
VLVFFDDIL+YS S+ H HL+ V EV+ HK +AK SK +LGH ISA +
Sbjct: 729 VLVFFDDILIYSSSIEEHKEHLRLVFEVMRLHKLFAKGSK--------EHLGHFISAREI 780
Query: 769 GPDPSKVQAIVDWPVPRNLTALRGFLGLTGFYRRFIKNYAAHASHLTDLLKQDQKDKHTL 828
DP+K+QA+ +WP P + +RGFLG G+YRRF++N+ A L L K D
Sbjct: 781 ETDPAKIQAVKEWPTPTTVKQVRGFLGFAGYYRRFVRNFGVIAGPLHALTKTDG------ 834
Query: 829 LPWSSAAADSFQHLKDLIISAPVLVLPDFSATFDIETDASGTAVGAVLSQKGHPISFFSK 888
WS A +F LK ++ +APVL LP F F +ETDA G + AVL QKGHP+++ S+
Sbjct: 835 FCWSLEAQSAFDTLKAVLCNAPVLALPVFDKQFMVETDACGQGIRAVLMQKGHPLAYISR 894
Query: 889 KLTLQMQHQSTYVREMYAVTEAVKKWRQYLIGHKFRIYTDQQSLKHLMTQTFQTPDQIKW 948
+L + H S Y +E+ A AV+KWR YL+ F I TDQ+SLK+L+ Q TP Q +W
Sbjct: 895 QLKGKQLHLSIYEKELLAFIFAVRKWRHYLLPSHFIIKTDQRSLKYLLEQRLNTPVQQQW 954
Query: 949 ATKLLGFDYEIFYKPGSENRVADALSRCHSSELPLLAAISSPVPEIITQLKQYYKTPEGI 1008
KLL FDYEI Y+ G EN VADALSR SE+ L A+S + + +++ Y++ +
Sbjct: 955 LPKLLEFDYEIQYRQGKENLVADALSRVEGSEV-LHMALSIVECDFLKEIQVAYESDGVL 1013
Query: 1009 QLIVDK-----STLPHFRVHHEVLYFKDGLFVPEHDQWRTSILSEYHASPAAGHSGLKPT 1063
+ I+ H+ ++L K + VP + +L H S G SG +
Sbjct: 1014 KDIISALQQHPDAKKHYSWSQDILRRKSKIVVPNDVEITNKLLQWLHCSGMGGRSGRDAS 1073
Query: 1064 LARLMASFNWPGIQTETKTFIKQCLPCQYNKYVPAKKSGLLQPLPTPAQIWEDISMDFIT 1123
R+ + F W G+ + + FI+ C CQ K A GLLQPLP P +IW D+SMDFI
Sbjct: 1074 HQRVKSLFYWKGMVKDIQAFIRSCGTCQQCKSDNAAYPGLLQPLPIPDKIWCDVSMDFIE 1133
Query: 1124 GLPPSHGHTVAWVIVDRLSKYAHFVALPANFTATSLANRFSSEICRLHGIPRSIVSDRDK 1183
GLP S G +V V+VDRLSK AHFVAL ++A ++A F + + HG P SIVSDRD
Sbjct: 1134 GLPNSGGKSVIMVVVDRLSKAAHFVALAHPYSALTVAQAFLDNVYKHHGCPTSIVSDRDV 1193
Query: 1184 IFLSHFWRDLFRVYGTKLRFSTAYHPETDGQTEVVNRGLETYLRCFAGEQPRSWYKFLHL 1243
+F S FW++ F++ G +LR S+AYHP++DGQTEVVNR LE YLRC +P W K+L L
Sbjct: 1194 LFTSDFWKEFFKLQGVELRMSSAYHPQSDGQTEVVNRCLENYLRCMCHARPHLWNKWLPL 1253
Query: 1244 AELWYNTSFHSAAGMTPFQAVYGRPPPSLLAYVPGSSAIQSLDESLQQRT*ILESLKANL 1303
AE WYNT++HS++ MTPF+ VYG+ PP L Y+PG S + + SLQ+R +L LK +L
Sbjct: 1254 AEYWYNTNYHSSSQMTPFELVYGQAPPIHLPYLPGKSKVAVVARSLQERENMLLFLKFHL 1313
Query: 1304 QRAQHRMKIQKDKSRREVTFEENAWVLLRLQPYRQRSLAHRLSNKLAKRFYGPFRVKRRI 1363
RAQHRMK D+ R E TF+ +V ++LQPYRQ+S+ R++ KL+ +++GP+++ +
Sbjct: 1314 MRAQHRMKQFADQHRTERTFDIGDFVYVKLQPYRQQSVVLRVNQKLSPKYFGPYKIIEKC 1373
Query: 1364 GSV 1366
G V
Sbjct: 1374 GEV 1376
>At2g10780 pseudogene
Length = 1611
Score = 651 bits (1680), Expect = 0.0
Identities = 446/1361 (32%), Positives = 672/1361 (48%), Gaps = 88/1361 (6%)
Query: 69 EWLFHAEQFFQLHQTPPAQRLELVSFYMQGDALSWYRWMHNNYQ------LSFWEAFTRA 122
EW ++ F+ + P + ++ +++GDA +W+ + F + F +
Sbjct: 193 EWRSRLKRNFKSTRCPEDYQRDIAVHFLEGDAHNWWLTVEKRRGDEVRSFADFEDEFNKK 252
Query: 123 LAIRFGPSAYENHQQELFKLQQTS-TVAEYQTRFEKVSNQVVGLSPE---AVLDCFISGL 178
F P A++ + L Q + TV EY F ++ + VG E A L FI GL
Sbjct: 253 Y---FPPEAWDRLECAYLDLVQGNRTVREYDEEFNRL-RRYVGRELEEEQAQLRRFIRGL 308
Query: 179 VPEIKRELAILKPYSVSQAIGIAKQIEAKIKESR--SSQQRVFRPNQSHFTSPSTAIVPS 236
EI+ + SVS+ + A IE I+E R + ++ R NQS P+
Sbjct: 309 RIEIRNHCLVRTFNSVSELVERAAMIEEGIEEERYLNREKAPIRNNQS--------TKPA 360
Query: 237 QPRPLASSSQAPKPVASSSLPIKRLNSAQMQERRALGLCFNCDEKYTIGHKCQPRLFLLM 296
+ K A + + + +A+G C C K C P++
Sbjct: 361 DKKRKFDKVDNTKSDAKTGECVTCGKNHSGTCWKAIGACGRCGSKDHAIQSC-PKMEPGQ 419
Query: 297 LADEVQETQEAAISLLSDTVEDVTVPVHEEAMHFQLSDQALHGRPSPRTLKFTAIVNGHP 356
+ET+ + ++ + E Q ++ +G P P + A
Sbjct: 420 SKVLGEETRTCFYCGKTGHLKRECPKLTAEKQAGQRDNRGGNGLPPPPKRQAVA---SRV 476
Query: 357 VVVLVDTGSSNNFVPPRTVSFLHLKVTPIPTFPVMVGNGAHIPCAGYIPDIEVTFAGNTF 416
+ + + NF R ++ K V G + G + I V G
Sbjct: 477 YELSEEANDAGNF---RAITGGFRKEPNTDYGMVRAAGGQAMYPTGLVRGISVVVNGVNM 533
Query: 417 HIPFYVMDLQGADFVLGLDWLKTLGKVISDFSIPSMSFVVNGKTCTLEGEPLPPPSHA-S 475
++ L+ D +LG+DWL K D + F + +G S S
Sbjct: 534 PADLIIVPLKKHDVILGMDWLGKY-KAHIDCHRGRIQFERDEGMLKFQGIRTTSGSLVIS 592
Query: 476 FNHFQRLIHTDAIAECHTITFLPSPPSTPSPQFLTLENLSTPPPDFDPALWELLQSYAPV 535
+R++ A TIT S L P ++ ++ V
Sbjct: 593 AIQAERMLGKGCEAYLATITTKEVGASA---------ELKDIP---------IVNEFSDV 634
Query: 536 FSTPHGLPPTRFHDHHINLLPNTPPVNVRPYRYPHSQKEAMATILTDMLQEGIVVPSTSP 595
F+ G+PP R I L P T P++ PYR ++ + L ++L +G + PS+SP
Sbjct: 635 FAAVSGVPPDRSDPFTIELEPGTTPISKAPYRMAPAEMAKLKKQLEELLDKGFIRPSSSP 694
Query: 596 YSSPVLLIKKKDGTWRFCVDFRSLNSITIKDRFPIPTIDELLDELGGASHFSKLDLRSGF 655
+ +PVL +KKKDG++R C+D+R LN +T+K+++P+P IDEL+D+LGGA FSK+DL SG+
Sbjct: 695 WGAPVLFVKKKDGSFRLCIDYRGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGY 754
Query: 656 HQIRLATEDTHKTAFRTVDGHYEFLVMPFGLTNAPSTFQAAMNDLLRPFLRRFVLVFFDD 715
HQI + D KTAFRT H+EF+VMPFGLTNAP+ F MN + R FL FV++F +D
Sbjct: 755 HQIPIEPTDVRKTAFRTRYDHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFIND 814
Query: 716 ILVYSPSLSAHMTHLKEVLEVLLSHKFYAKLSKCIFGVTSVSYLGHIISANGVGPDPSKV 775
ILVYS S AH HL+ VLE L H+ +AKLSKC F SV +LGH+IS GV DP K+
Sbjct: 815 ILVYSKSWEAHQEHLRAVLERLREHELFAKLSKCSFWQRSVGFLGHVISDQGVSVDPEKI 874
Query: 776 QAIVDWPVPRNLTALRGFLGLTGFYRRFIKNYAAHASHLTDLLKQDQKDKHTLLPWSSAA 835
++I +WP PRN T +R FLGL G+YRRF+ ++A+ A LT L +D T WS
Sbjct: 875 RSIKEWPRPRNATEIRSFLGLAGYYRRFVMSFASMAQPLTRLTGKD-----TAFNWSDEC 929
Query: 836 ADSFQHLKDLIISAPVLVLPDFSATFDIETDASGTAVGAVLSQKGHPISFFSKKLTLQMQ 895
SF LK ++ +APVLVLP+ + + TDAS +G VL QKG I++ S++L +
Sbjct: 930 EKSFLELKAMLTNAPVLVLPEEGEPYTVYTDASIVGLGCVLMQKGSVIAYASRQLRKHEK 989
Query: 896 HQSTYVREMYAVTEAVKKWRQYLIGHKFRIYTDQQSLKHLMTQTFQTPDQIKWATKLLGF 955
+ T+ EM AV +K WR YL G K +IYTD +SLK++ TQ Q +W + +
Sbjct: 990 NYPTHDLEMAAVVFFLKIWRSYLYGAKVQIYTDHKSLKYIFTQPELNLRQRRWMELVADY 1049
Query: 956 DYEIFYKPGSENRVADALSRCHSS------------------------ELPLLAAISSPV 991
+ +I Y PG N+VADALSR S E+ L ++
Sbjct: 1050 NLDIAYHPGKANQVADALSRRRSEVEAERSQVDLVNMMGTLHVNALSKEVEPLGLGAADQ 1109
Query: 992 PEIITQLKQYYKTPEGIQLIVDKSTLPHFRVHHEVLYFKDGLFVPEHDQWRTSILSEYHA 1051
+++++++ + E I+ + + ++ + + VP + IL E H
Sbjct: 1110 ADLLSRIRLAQERDEEIKGWAQNNKTEYQTSNNGTIVVNGRVCVPNDRALKEEILREAHQ 1169
Query: 1052 SPAAGHSGLKPTLARLMASFNWPGIQTETKTFIKQCLPCQYNKYVPAKKSGLLQPLPTPA 1111
S + H G L ++W G++ + ++ +C CQ K SGLLQ LP P
Sbjct: 1170 SKFSIHPGSNKMYRDLKRYYHWVGMKKDVARWVAKCPTCQLVKAEHQVPSGLLQNLPIPE 1229
Query: 1112 QIWEDISMDFITGLPPS--HGHTVAWVIVDRLSKYAHFVALPANFTATSLANRFSSEICR 1169
W+ I+MDF+TGLP H WV+VDRL+K AHF+A+ A +A ++ EI R
Sbjct: 1230 WKWDHITMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMAISDKDGAEIIAEKYIDEIVR 1289
Query: 1170 LHGIPRSIVSDRDKIFLSHFWRDLFRVYGTKLRFSTAYHPETDGQTEVVNRGLETYLRCF 1229
LHGIP SIVSDRD F S FW+ + GT++ STAYHP+TD Q+E + LE LR
Sbjct: 1290 LHGIPVSIVSDRDTRFTSKFWKAFQKALGTRVNLSTAYHPQTDEQSERTIQTLEDMLRAC 1349
Query: 1230 AGEQPRSWYKFLHLAELWYNTSFHSAAGMTPFQAVYGRPPPSLLAYVPGSSAIQSLDESL 1289
+ +W K+L L E YN SF ++ GM+P++A+YGR + L + P +
Sbjct: 1350 VLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRACRTPLCWTPVGERRLFGPTIV 1409
Query: 1290 QQRT*ILESLKANLQRAQHRMKIQKDKSRREVTFEENAWVLLRLQPYRQRSLAHRLSN-- 1347
+ T ++ LK L+ AQ R K +K R+E+ F+ V L+ Y+ A R ++
Sbjct: 1410 DETTERMKFLKIKLKEAQDRQKSYANKRRKELEFQVGDLVYLKAMTYKG---AGRFTSRK 1466
Query: 1348 KLAKRFYGPFRVKRRIGSVAYELDLPP-TSKLHNVFHVSLL 1387
KL+ R+ GP++V R+G+VAY+LDLPP + HNVFHVS L
Sbjct: 1467 KLSPRYVGPYKVIERVGAVAYKLDLPPKLNAFHNVFHVSQL 1507
>At2g04670 putative retroelement pol polyprotein
Length = 1411
Score = 595 bits (1535), Expect = e-170
Identities = 371/1025 (36%), Positives = 533/1025 (51%), Gaps = 86/1025 (8%)
Query: 390 VMVGNGAHIPCAGYIPDIEVTFAGNTFHIPFYVMDLQGADFVLGLDWLKTLGKVISDFSI 449
V V G + G +++ AG + + ++ D +LG+DWL +V D
Sbjct: 365 VKVAGGQFLAVLGRAKGVDIQIAGESMPADLIISPVELYDVILGMDWLDHY-RVHLDCHR 423
Query: 450 PSMSFVVNGKTCTLEG-EPLPPPSHASFNHFQRLIHTDAIAECHTITFLPSPPSTPSPQF 508
+SF +G P S +++I A TI+ P+
Sbjct: 424 GRVSFERPEGRLVYQGVRPTSGSLVISAVQAKKMIEKGCEAYLVTISM---------PES 474
Query: 509 LTLENLSTPPPDFDPALWELLQSYAPVFSTPHGLPPTRFHDHHINLLPNTPPVNVRPYRY 568
L +S ++Q + VF + GLPP+R I L P T P++ PYR
Sbjct: 475 LGQVAVSDI---------RVIQEFEDVFQSLQGLPPSRSDPFTIELEPGTAPLSKAPYRM 525
Query: 569 PHSQKEAMATILTDMLQEGIVVPSTSPYSSPVLLIKKKDGTWRFCVDFRSLNSITIKDRF 628
++ + L D+L +G + PSTSP+ +PVL +KKKDG++R C+D+R LN +T+K+++
Sbjct: 526 APAEMTELKKQLEDLLGKGFIRPSTSPWGAPVLFVKKKDGSFRLCIDYRGLNWVTVKNKY 585
Query: 629 PIPTIDELLDELGGASHFSKLDLRSGFHQIRLATEDTHKTAFRTVDGHYEFLVMPFGLTN 688
P+P IDELLD+L GA+ FSK+DL SG+HQI +A D KTAFRT GH+EF+VMPF LTN
Sbjct: 586 PLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEADVRKTAFRTRYGHFEFVVMPFALTN 645
Query: 689 APSTFQAAMNDLLRPFLRRFVLVFFDDILVYSPSLSAHMTHLKEVLEVLLSHKFYAKLSK 748
AP+ F MN + + FL FV++F DDILVYS S H HL+ V+E L K +AKLSK
Sbjct: 646 APAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHEVHLRRVMEKLREQKLFAKLSK 705
Query: 749 CIFGVTSVSYLGHIISANGVGPDPSKVQAIVDWPVPRNLTALRGFLGLTGFYRRFIKNYA 808
C F + +LGHI+SA GV DP K++AI DWP P N T +R FL LTG+YRRF+K +A
Sbjct: 706 CSFWQREIGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEIRSFLRLTGYYRRFVKGFA 765
Query: 809 AHASHLTDLLKQDQKDKHTLLPWSSAAADSFQHLKDLIISAPVLVLPDFSATFDIETDAS 868
+ A +T L +D WS + F LK+++ S PVL LP+ + + TDAS
Sbjct: 766 SMAQPMTKLTGKD-----VPFVWSPECEEGFVSLKEMLTSTPVLALPEHGQPYMVYTDAS 820
Query: 869 GTAVGAVLSQKGHPISFFSKKLTLQMQHQSTYVREMYAVTEAVKKWRQYLIGHKFRIYTD 928
+G VL Q+G I++ S++L + T+ EM V A+K WR YL G K +++TD
Sbjct: 821 RVGLGCVLMQRGKVIAYASRQLRKHEGNYPTHDLEMAVVIFALKIWRSYLYGGKVQVFTD 880
Query: 929 QQSLKHLMTQTFQTPDQIKWATKLLGFDYEIFYKPGSENRVADALSRCHSSELPLLAAIS 988
+SLK++ Q Q++W + +D EI Y PG N VADALSR P ++
Sbjct: 881 HKSLKYIFNQPELNLRQMRWMELVADYDLEIAYHPGKANVVADALSRKRVGAAP-GQSVE 939
Query: 989 SPVPEI-ITQLKQYYKTPEGIQLIVDKSTLPHFRVHHE---------------------- 1025
+ V EI +L + P G++ + L R+ E
Sbjct: 940 ALVSEIGALRLCVVAREPLGLEAVDRADLLTRARLAQEKDEGLIAASKAEGSEYQFAANG 999
Query: 1026 VLYFKDGLFVPEHDQWRTSILSEYHASPAAGHSGLKPTLARLMASFNWPGIQTETKTFIK 1085
++ + VP+ ++ R ILSE HAS + H G L + W G++ + ++
Sbjct: 1000 TIFVYGRVCVPKDEELRREILSEAHASMFSIHPGATKMYRDLKRYYQWVGMKRDVANWVA 1059
Query: 1086 QCLPCQYNKYVPAKKSGLLQPLPTPAQIWEDISMDFITGLPPSHGHTVAWVIVDRLSKYA 1145
+C CQ K Q+ + I WVI+DRL+K A
Sbjct: 1060 ECDVCQLVK--------------AEHQVPDAI-----------------WVIMDRLTKSA 1088
Query: 1146 HFVALPANFTATSLANRFSSEICRLHGIPRSIVSDRDKIFLSHFWRDLFRVYGTKLRFST 1205
HF+A+ A LA ++ SEI +LHG+P SIVSDRD F FWR GTK++ ST
Sbjct: 1089 HFLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTFAFWRAFQAKMGTKVQMST 1148
Query: 1206 AYHPETDGQTEVVNRGLETYLRCFAGEQPRSWYKFLHLAELWYNTSFHSAAGMTPFQAVY 1265
AYHP+TDGQ+E + LE LR + W L L E YN S+ ++ GM PF+A+Y
Sbjct: 1149 AYHPQTDGQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYQASIGMAPFEALY 1208
Query: 1266 GRPPPSLLAYVPGSSAIQSLDESLQQRT*ILESLKANLQRAQHRMKIQKDKSRREVTFEE 1325
GRP + L + + +Q+ T + LK N++ AQ R + DK RRE+ FE
Sbjct: 1209 GRPCWTPLRWTQVEERSIYGADYVQETTERIRVLKLNMKEAQARQRSYADKRRRELEFEV 1268
Query: 1326 NAWVLLRLQPYR--QRSLAHRLSNKLAKRFYGPFRVKRRIGSVAYELDLPPTSK-LHNVF 1382
V L++ R RS+ L KL+ R+ GPFR+ R+G VAY L+LP + H VF
Sbjct: 1269 GDRVYLKMAMLRGPNRSI---LETKLSPRYMGPFRIVERVGPVAYRLELPDVMRAFHKVF 1325
Query: 1383 HVSLL 1387
HV +L
Sbjct: 1326 HVLML 1330
Score = 33.5 bits (75), Expect = 0.87
Identities = 34/174 (19%), Positives = 79/174 (44%), Gaps = 19/174 (10%)
Query: 64 GSKPLE---WLFHAEQFFQLHQTPPAQRLELVSFYMQGDALSWYRWMHNNYQLS--FWEA 118
G+ P E W ++ F + P R++L +++GDA W+R + + + W
Sbjct: 141 GTSPEEADSWRSRVQRNFGSSRCPAEYRVDLAVHFLEGDAHLWWRSVTARRRQADMSWAD 200
Query: 119 FTRALAIRFGP-SAYENHQQELFKLQQTS-TVAEYQTRFEK-VSNQVVGL-SPEAVLDCF 174
F ++ P A + + +L Q +V EY F + ++ G+ +A + F
Sbjct: 201 FVAEFNAKYFPQEALDRMEARFLELTQGEWSVREYDREFNRLLAYAGRGMEDDQAQMRRF 260
Query: 175 ISGLVPEIKRELAILKPYSVSQAIGIAKQIEAKIK----------ESRSSQQRV 218
+ GL P+++ + + + + + + A ++E ++ +++++QQ+V
Sbjct: 261 LRGLRPDLRVQCRVSQYATKAALVETAAEVEEDLQRQVVGVSPAVQTKNTQQQV 314
>At2g14650 putative retroelement pol polyprotein
Length = 1328
Score = 582 bits (1500), Expect = e-166
Identities = 383/1070 (35%), Positives = 544/1070 (50%), Gaps = 123/1070 (11%)
Query: 333 SDQALHGRPSPRTLKFTAIVNGHPVVVLVDTGSSNNFVPPRTVSFLHLKVTPIPTF-PVM 391
S++A+ G + T +V G VL D+G+S+ F+ P + S +++ P V
Sbjct: 289 SNRAITGFLAHEVCVGTLLVGGVEAHVLFDSGASHCFITPESASRGNIRGDPGEQLGAVK 348
Query: 392 VGNGAHIPCAGYIPDIEVTFAGNTFHIPFYVMDLQGADFVLGLDWLKTL--------GKV 443
V G + G +++ AG + + ++ D +LG+DWL G+V
Sbjct: 349 VAGGQFVAVLGRTKGVDIQIAGESMPADLIISPVELYDVILGMDWLDHYRVHLDCHRGRV 408
Query: 444 ISDFSIPSMSFVVNGKTCTLEGEPLPPPSHASFNHFQRLIHTDAIAECHTITFLPSPPST 503
F P S V G P S +++I A
Sbjct: 409 --SFERPEGSLVYQGV------RPTSGSLVISAVQAEKMIEKGCEA-------------- 446
Query: 504 PSPQFLTLENLSTPPPDFDPALWELLQSYAPVFSTPHGLPPTRFHDHHINLLPNTPPVNV 563
+L E+ +++ LQ P S P I L P T P++
Sbjct: 447 ----YLEFED-----------VFQSLQGLPPSRSDP----------FTIELEPGTAPLSK 481
Query: 564 RPYRYPHSQKEAMATILTDMLQEGIVVPSTSPYSSPVLLIKKKDGTWRFCVDFRSLNSIT 623
PYR ++ + L D+L +PVL +KKKDG++R C+D+R LN +T
Sbjct: 482 APYRMAPAEMAELKKQLEDLL------------GAPVLFVKKKDGSFRLCIDYRGLNWVT 529
Query: 624 IKDRFPIPTIDELLDELGGASHFSKLDLRSGFHQIRLATEDTHKTAFRTVDGHYEFLVMP 683
+K+++P+P IDELLD+L GA+ FSK+DL SG+H I +A D KTAFRT GH+EF+VMP
Sbjct: 530 VKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHLIPIAEADVRKTAFRTRYGHFEFVVMP 589
Query: 684 FGLTNAPSTFQAAMNDLLRPFLRRFVLVFFDDILVYSPSLSAHMTHLKEVLEVLLSHKFY 743
FGLTNAP+ F MN + + L FV++F DDILVYS SL H HL+ V+E L K +
Sbjct: 590 FGLTNAPAAFMRLMNSVFQEVLDEFVIIFIDDILVYSKSLEEHEVHLRRVMEKLREQKLF 649
Query: 744 AKLSKCIFGVTSVSYLGHIISANGVGPDPSKVQAIVDWPVPRNLTALRGFLGLTGFYRRF 803
AKLSKC F + +LGHI+SA GV DP K++AI DW P N T +R FLGL G+YRRF
Sbjct: 650 AKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWHTPTNATEIRSFLGLAGYYRRF 709
Query: 804 IKNYAAHASHLTDLLKQDQKDKHTLLPWSSAAADSFQHLKDLIISAPVLVLPDFSATFDI 863
+K +A+ A +T L +D WS + F LK+++ S PVL LP+ + +
Sbjct: 710 VKGFASMAQPMTKLTGKD-----VPFVWSPECEEGFVSLKEMLTSTPVLALPEHGEPYMV 764
Query: 864 ETDASGTAVGAVLSQKGHPISFFSKKLTLQMQHQSTYVREMYAVTEAVKKWRQYLIGHKF 923
TDASG +G VL Q+G I++ S++L + T+ EM AV A+K WR YL G
Sbjct: 765 YTDASGVGLGCVLMQRGKVIAYASRQLRKHEGNYPTHDLEMAAVIFALKIWRSYLYGGNV 824
Query: 924 RIYTDQQSLKHLMTQTFQTPDQIKWATKLLGFDYEIFYKPGSENRVADALSRCHSSELPL 983
+++TD +SLK++ TQ Q +W + +D EI Y PG N VADALS P
Sbjct: 825 QVFTDHKSLKYIFTQPELNLRQRQWMELVADYDLEIAYHPGKANVVADALSHKRVGAAP- 883
Query: 984 LAAISSPVPEI-ITQLKQYYKTPEGIQLIVDKSTLPHFRVHHEVLYFKDGLFVPEHDQWR 1042
++ + V EI +L + P G++ + L R+ E KD
Sbjct: 884 GQSVEALVSEIGALRLCAVAREPLGLEAVDRADLLTRVRLAQE----KD----------- 928
Query: 1043 TSILSEYHASPAAGHSGLKPTLARLMASFNWPGIQTETKTFIKQCLPCQYNKYVPAKKSG 1102
L+A++ G + + ++ +C CQ K G
Sbjct: 929 ----------------------EGLIAAYKAEGSE-DVANWVAECDVCQLVKAEHQVPGG 965
Query: 1103 LLQPLPTPAQIWEDISMDFITGLPPSHGHTVAWVIVDRLSKYAHFVALPANFTATSLANR 1162
+LQ LP P W+ I++DF+ GLP S WVIVDRL+K AHF+A+ A LA +
Sbjct: 966 MLQSLPIPEWKWDFITIDFVVGLPVSRTKDAIWVIVDRLTKSAHFLAIRKTDGAAVLAKK 1025
Query: 1163 FSSEICRLHGIPRSIVSDRDKIFLSHFWRDLFRVYGTKLRFSTAYHPETDGQTEVVNRGL 1222
+ SEI +LHG+P SIVSDRD F S FWR GTK++ STAYHP+T GQ+E + L
Sbjct: 1026 YVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQAEMGTKVQMSTAYHPQTYGQSERTIQTL 1085
Query: 1223 ETYLRCFAGEQPRSWYKFLHLAELWYNTSFHSAAGMTPFQAVYGRP--PPSLLAYVPGSS 1280
E LR + W L L E YN S+ ++ GM PF+A+Y RP P L V G
Sbjct: 1086 EDMLRMCVLDWGGHWADHLSLVEFAYNNSYPASIGMAPFEALYERPCRTPLCLTQV-GER 1144
Query: 1281 AIQSLDESLQQRT*ILESLKANLQRAQHRMKIQKDKSRREVTFEENAWVLLRLQPYR--Q 1338
+I D +Q+ T + LK N++ AQ R + DK RRE+ FE V L++ R
Sbjct: 1145 SIYGAD-YVQETTERIRVLKLNMKEAQDRQRSYADKRRRELEFEVGDRVYLKMAMLRGPN 1203
Query: 1339 RSLAHRLSNKLAKRFYGPFRVKRRIGSVAYELDLPPTSK-LHNVFHVSLL 1387
RS++ KL+ R+ GPFR+ R+G VAY L+LP + H VFHVS+L
Sbjct: 1204 RSIS---ETKLSPRYMGPFRIVERVGPVAYRLELPDVMRAFHKVFHVSML 1250
>At4g10580 putative reverse-transcriptase -like protein
Length = 1240
Score = 471 bits (1213), Expect = e-132
Identities = 276/741 (37%), Positives = 397/741 (53%), Gaps = 62/741 (8%)
Query: 528 LLQSYAPVFSTPHGLPPTRFHDHHINLLPNTPPVNVRPYRYPHSQKEAMATILTDMLQEG 587
++Q + VF + GLPP++ I L P T P++ PYR ++ + L D+L +G
Sbjct: 459 VVQEFQDVFQSLQGLPPSQSDPFTIELEPGTAPLSKAPYRMAPAEMAELKKQLKDLLGKG 518
Query: 588 IVVPSTSPYSSPVLLIKKKDGTWRFCVDFRSLNSITIKDRFPIPTIDELLDELGGASHFS 647
+ PSTSP+ +PVL +KKKDG++R C+D+R LN +T+K+R+P+P IDELLD+L GA+ FS
Sbjct: 519 FIRPSTSPWGAPVLFVKKKDGSFRLCIDYRELNRVTVKNRYPLPRIDELLDQLRGATCFS 578
Query: 648 KLDLRSGFHQIRLATEDTHKTAFRTVDGHYEFLVMPFGLTNAPSTFQAAMNDLLRPFLRR 707
K+DL SG+HQI +A D KTAFRT GH+EF+VMPFGLTNAP+ F MN + + FL
Sbjct: 579 KIDLTSGYHQIPIAEADVRKTAFRTRYGHFEFVVMPFGLTNAPAVFMRLMNSVFQEFLDE 638
Query: 708 FVLVFFDDILVYSPSLSAHMTHLKEVLEVLLSHKFYAKLSKCIFGVTSVSYLGHIISANG 767
FV++F DDILVYS S HL+ V+E L K +AKLSKC F + +LGHI+SA G
Sbjct: 639 FVIIFIDDILVYSKSPEEQEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEG 698
Query: 768 VGPDPSKVQAIVDWPVPRNLTALRGFLGLTGFYRRFIKNYAAHASHLTDLLKQDQKDKHT 827
V DP K++AI DWP P N T +R FLG G+YRRF+K +A+ A +T L +D
Sbjct: 699 VSVDPEKIEAIRDWPRPTNATEIRSFLGWAGYYRRFVKGFASMAQPMTKLTGKD-----V 753
Query: 828 LLPWSSAAADSFQHLKDLIISAPVLVLPDFSATFDIETDASGTAVGAVLSQKGHPISFFS 887
WS + F LK+++ S PVL LP+ + + TDAS +G VL Q G I++ S
Sbjct: 754 PFVWSQECEEGFVSLKEMLTSTPVLALPEHGQPYMVYTDASRVGLGCVLMQHGKVIAYAS 813
Query: 888 KKLTLQMQHQSTYVREMYAVTEAVKKWRQYLIGHKFRIYTDQQSLKHLMTQTFQTPDQIK 947
++L + T+ EM AV A+K WR YL G K +++TD +SLK++ TQ Q +
Sbjct: 814 RQLMKHEGNYPTHDLEMAAVIFALKIWRSYLYGGKVQVFTDHKSLKYIFTQPELNLRQRR 873
Query: 948 WATKLLGFDYEIFYKPGSENRVADALSRCHSSELPLLAAISSPVPEIITQ-----LKQYY 1002
W + +D EI Y PG N V DALSR AA+ V ++++ L
Sbjct: 874 WMELVADYDLEIAYHPGKANVVVDALSRKRVG-----AALGQSVEVLVSEIGALRLCAVA 928
Query: 1003 KTPEGIQLIVDKSTLPHFRVHHEVLYFKDGLFVPEHDQWRTSILSEYHASPAAGHSGLKP 1062
+ P G++ + L R+ + KD GL+
Sbjct: 929 REPLGLEAVDRADLLTRVRLAQK----KD--------------------------EGLRA 958
Query: 1063 T--LARLMASFNWPGIQTETKTFIKQCLPCQYNKYVPAKKSGLLQPLPTPAQIWEDISMD 1120
T L + W G++ + ++ +C CQ K G+LQ LP P W+ I+MD
Sbjct: 959 TKMYRDLKRYYQWVGMKMDVANWVAECDVCQLVKAEHQVLGGMLQSLPIPEWKWDFITMD 1018
Query: 1121 FITGLPPSHGHTVAWVIVDRLSKYAHFVALPANFTATSLANRFSSEICRLHGIPRSI--V 1178
+ GL S WVIVDRL+K AHF+A+ A LA +F SEI +LHG+P ++
Sbjct: 1019 LVVGLRVSRTKDAIWVIVDRLTKSAHFLAIRKTDGAAVLAKKFVSEIVKLHGVPLNMKEA 1078
Query: 1179 SDRDKIFLSHFWRDLFRVYGTKLRF-------------STAYHPETDGQTEVVNRGLETY 1225
DR + + R+L G ++ T P G ++V R
Sbjct: 1079 QDRQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSPRYMGPFKIVERVEPVA 1138
Query: 1226 LRCFAGEQPRSWYKFLHLAEL 1246
R + R+++K H++ L
Sbjct: 1139 YRLELPDVMRAFHKVFHVSML 1159
Score = 63.2 bits (152), Expect = 1e-09
Identities = 37/95 (38%), Positives = 54/95 (55%), Gaps = 6/95 (6%)
Query: 1296 LESLKANLQRAQHRMKIQKDKSRREVTFEENAWVLLRLQPYR--QRSLAHRLSNKLAKRF 1353
L + N++ AQ R + DK RRE+ FE V L++ R RS++ KL+ R+
Sbjct: 1068 LHGVPLNMKEAQDRQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISE---TKLSPRY 1124
Query: 1354 YGPFRVKRRIGSVAYELDLPPTSK-LHNVFHVSLL 1387
GPF++ R+ VAY L+LP + H VFHVS+L
Sbjct: 1125 MGPFKIVERVEPVAYRLELPDVMRAFHKVFHVSML 1159
>At2g06890 putative retroelement integrase
Length = 1215
Score = 441 bits (1134), Expect = e-123
Identities = 343/1098 (31%), Positives = 516/1098 (46%), Gaps = 101/1098 (9%)
Query: 126 RFGPSAYENHQQELFKL----QQTSTVAEYQTRFEKVSNQV-VGLSPEAVLDCFISGLVP 180
RF PS Y H++ KL Q +V EY E + + + EA L F+ L
Sbjct: 8 RFVPSHY--HRELHLKLRNLTQGNRSVEEYYKEMETLMLRADISEDREATLSRFLGDLNR 65
Query: 181 EIKRELAILKPYSVSQAIGIAKQIEAKIKESRSSQQRVFRPNQSHFTSPSTAIVPSQPRP 240
+I+ L + + + A E ++K SS+ T P+ R
Sbjct: 66 DIQDRLETQYYVQIEEMLHKAILFEQQVKRKSSSRSSY---------GSGTIAKPTYQRE 116
Query: 241 LASSSQAPKPVASSSLPIKRLNSAQMQERRAL--------GLCFNCDEKYTIGHKCQPRL 292
+SS KP+ S K + Q + +A C+ C K ++C +
Sbjct: 117 ERTSSYHNKPIVSPRAESKPYAAVQDHKGKAEISTSRVRDVRCYKCQGKGHYANECPNKR 176
Query: 293 FLLMLADEVQETQEAAISLLSDTVEDVTVPVHEEAMHFQ--LSDQALHGRPSPRTLKF-- 348
+++L + E +E S E+ +P E + + LS Q R F
Sbjct: 177 VMILLDNGEIEPEEEIPDSPSSLKENEELPAQGELLVARRTLSVQTKTDEQEQRKNLFHT 236
Query: 349 TAIVNGHPVVVLVDTGSSNNFVPPRTVSFLHLKVTPIPTFPVMVGNGAHIPCAGYIPDIE 408
V+G +++D GS N V L LK + + V N +P
Sbjct: 237 RCHVHGKVCSLIIDGGSCTNVASETMVKKLGLKWLN-DSGKMRVKNQVVVP--------- 286
Query: 409 VTFAGNTFHIPFYVMDLQGADFVLGLDWLKTLGKVISDFSIPSMSFVVNG-KTCTLEGEP 467
+ I V+ ++ +LG W ++ KV+ D SF G KT + P
Sbjct: 287 IVIGKYEDEILCDVLPMEAGHILLGRPW-QSDRKVMHDGFTNRHSFEFKGGKTILVSMTP 345
Query: 468 ---LPPPSHASFNHFQRLIHTDAIAECHTITFLPSPPSTPSPQFL-----TLENLSTPPP 519
H Q + + A+ + S S+ P L L +L+ P
Sbjct: 346 HEVYQDQIHLKQKKEQVVKQPNFFAKSGEVK---SAYSSKQPMLLFVFKEALTSLTNFAP 402
Query: 520 DFDPALWELLQSYAPVF--STPHGLPPTRFHDHHINLLPNTPPVNVRPYRYPHSQKEAMA 577
+ LLQ Y VF P GLPP R +H I+ +P N YR
Sbjct: 403 VLPSEMTSLLQDYKDVFPEDNPKGLPPIRGIEHQIDFVPGASLPNRPAYR---------- 452
Query: 578 TILTDMLQEGIVVPSTSPYSSPVLLIKKKDGTWRFCVDFRSLNSITIKDRFPIPTIDELL 637
T+P + L ++KDG+WR C D R++N++T+K PIP +D++L
Sbjct: 453 ---------------TNPVETKELQ-RQKDGSWRMCFDCRAINNVTVKYCHPIPRLDDML 496
Query: 638 DELGGASHFSKLDLRSGFHQIRLATEDTHKTAFRTVDGHYEFLVMPFGLTNAPSTFQAAM 697
DEL G+S FSK+DL+SG+HQIR+ D KTAF+T G YE+LVMPFGLT+APSTF M
Sbjct: 497 DELHGSSIFSKIDLKSGYHQIRMNEGDEWKTAFKTKHGLYEWLVMPFGLTHAPSTFMRLM 556
Query: 698 NDLLRPFLRRFVLVFFDDILVYSPSLSAHMTHLKEVLEVLLSHKFYAKLSKCIFGVTSVS 757
N +LR F+ FV+V+FDDILVYS SL H+ HL VL VL + YA L KC F ++
Sbjct: 557 NHVLRAFIGIFVIVYFDDILVYSESLREHIEHLDSVLNVLRKEELYANLKKCTFCTDNLV 616
Query: 758 YLGHIISANGVGPDPSKVQAIVDWPVPRNLTALRGFLGLTGFYRRFIKNYAAHASHLTDL 817
+LG ++SA+GV D KV+AI DWP P+ + +R F GL GFYRRF K+++ + LT++
Sbjct: 617 FLGFVVSADGVKVDEEKVKAIRDWPSPKTVGEVRSFHGLAGFYRRFFKDFSTIVAPLTEV 676
Query: 818 LKQDQKDKHTLLPWSSAAADSFQHLKDLIISAPVLVLPDFSATFDIETDASGTAVGAVLS 877
+K+D K W A ++FQ LKD + +APVL+L +F TF+IE DASG +GAVL
Sbjct: 677 MKKDVGFK-----WEKAQEEAFQSLKDKLTNAPVLILSEFLKTFEIECDASGIGIGAVLM 731
Query: 878 QKGHPISFFSKKLTLQMQHQSTYVREMYAVTEAVKKWRQYLIGHKFRIYTDQQSLKHLMT 937
Q I+FFS+KL + TY +E+YA+ A+++W+ YL F I+TD +SLKHL
Sbjct: 732 QDQKLIAFFSEKLGGATLNYPTYDKELYALVRALQRWQHYLWPKVFVIHTDHESLKHLKG 791
Query: 938 QTFQTPDQIKWATKLLGFDYEIFYKPGSENRVADALSRCHSSELPLLAAISSPVPEIITQ 997
Q +W + F Y I YK G +N VADALS+ ++ LL+ ++ + Q
Sbjct: 792 QQKLNKRHARWVEFIETFAYVIKYKKGKDNVVADALSQRYT----LLSTLNVKLMG-FEQ 846
Query: 998 LKQYYKTPEGIQLI---VDKSTLPHFRVHHEVLYFKDGLFVPEHDQWRTSILSEYHASPA 1054
+K+ Y+T Q + +K + + L++++ L VP + R + E H
Sbjct: 847 IKEVYETDHDFQEVYKACEKFASGRYFRQDKFLFYENRLCVP-NCSLRDLFVREAHGGGL 905
Query: 1055 AGHSGLKPTLARLMASFNWPGIQTETKTFIKQCLPCQYNKYVPAKKSGLLQPLPTPAQIW 1114
GH G+ TL + F WP ++ + K +C C+ K + +GL PLP P W
Sbjct: 906 MGHFGIAKTLEVMTEHFRWPHMKCDVKRICGRCNTCKQAK-SKIQPNGLYTPLPIPKHPW 964
Query: 1115 EDISMDFITGLPPSHGHTVAWVIVDRLSKYAHFVALPANFTATSLANRFSSE-------I 1167
DISMDF+ GLP + ++ V Y P + L+ R S + +
Sbjct: 965 NDISMDFVMGLPRTGKDSIFVVYSPFQIVYGFNPISPFDLIPLPLSERVSIDGKKKAELV 1024
Query: 1168 CRLHGIPRSIVSDRDKIF 1185
++H R + ++ K++
Sbjct: 1025 QQIHENARRNIEEKTKLY 1042
Score = 50.8 bits (120), Expect = 5e-06
Identities = 45/122 (36%), Positives = 62/122 (49%), Gaps = 16/122 (13%)
Query: 1259 TPFQAVYGRPPPSLLAYVP-GSSAIQSLD-----ESLQQRT*ILESLKANLQRAQHRMKI 1312
+PFQ VYG P S +P S S+D E +QQ I E+ + N++
Sbjct: 988 SPFQIVYGFNPISPFDLIPLPLSERVSIDGKKKAELVQQ---IHENARRNIEEKTKLYAK 1044
Query: 1313 QKDKSRREVTFE--ENAWVLLRLQPYRQRSLAHRLSNKLAKRFYGPFRVKRRIGSVAYEL 1370
Q +K RRE FE + W+ LR ++R A R S KL R GPF++ +RI AY+L
Sbjct: 1045 QANKGRREQIFEVGDMVWIHLR----KERFPAQRKS-KLMPRIDGPFKIIKRINDNAYQL 1099
Query: 1371 DL 1372
DL
Sbjct: 1100 DL 1101
>At3g31970 hypothetical protein
Length = 1329
Score = 396 bits (1018), Expect = e-110
Identities = 265/758 (34%), Positives = 368/758 (47%), Gaps = 104/758 (13%)
Query: 655 FHQIRLATEDTHKTAFRTVDGHYEFLVMPFGLTNAPSTFQAAMNDLLRPFLRRFVLVFFD 714
F I +A + KTAFRT GH+EF+VMPFGLTN P+ F MN + + FL FV++F D
Sbjct: 570 FEDIPIAEANVRKTAFRTRYGHFEFVVMPFGLTNIPTAFMRLMNSVFQEFLDEFVIIFID 629
Query: 715 DILVYSPSLSAHMTHLKEVLEVLLSHKFYAKLSKCIFGVTSVSYLGHIISAN-GVGPDPS 773
DILVYS S H V S G A GV D
Sbjct: 630 DILVYSKSPEEHE-------------------------VQSEESDGEAAGAEVGVSVDLE 664
Query: 774 KVQAIVDWPVPRNLTALRGFLGLTGFYRRFIKNYAAHASHLTDLLKQDQKDKHTLLPWSS 833
K++AI DWP P N T +R FLGL G+Y+RF+K +A+ A +T L +D WS
Sbjct: 665 KIEAIRDWPRPTNATEIRSFLGLAGYYKRFVKVFASMAQPMTKLTGKDVP-----FVWSP 719
Query: 834 AAADSFQHLKDLIISAPVLVLPDFSATFDIETDASGTAVGAVLSQKGHPISFFSKKLTLQ 893
+ F LK+++ S PVL LP+ + + TDAS + VL Q+G
Sbjct: 720 ECDEGFMSLKEMLTSTPVLALPEHGEPYMVYTDASRVGLDCVLMQRG------------- 766
Query: 894 MQHQSTYVREMYAVTEAVKKWRQYLIGHKFRIYTDQQSLKHLMTQTFQTPDQIKWATKLL 953
+++TD +SLK++ TQ Q +W +
Sbjct: 767 ------------------------------KVFTDHKSLKYIFTQPELNLRQRRWMELVA 796
Query: 954 GFDYEIFYKPGSENRVADALSR-------------------CHSSELPL-LAAISSPVPE 993
+D EI Y G N VADALSR C ++ PL L A+ +
Sbjct: 797 DYDLEIAYHSGKANVVADALSRKRVGGSVEALVSEIGALRLCVMAQEPLGLEAVDRA--D 854
Query: 994 IITQLKQYYKTPEGIQLIVDKSTLPHFRVHHEVLYFKDGLFVPEHDQWRTSILSEYHASP 1053
++T+++ + EG+ + + + + VP+ ++ R ILSE HAS
Sbjct: 855 LLTRVRLAQEKDEGLIAASKADGSEYQFAANGTILVHGRVCVPKDEELRREILSEAHASM 914
Query: 1054 AAGHSGLKPTLARLMASFNWPGIQTETKTFIKQCLPCQYNKYVPAKKSGLLQPLPTPAQI 1113
+ H L + W G++ + ++ +C CQ K GLLQ LP
Sbjct: 915 FSIHPRATKMYRDLKRYYQWVGMKRDVANWVTECDVCQLVKAEHQVPGGLLQSLPILEWK 974
Query: 1114 WEDISMDFITGLPPSHGHTVAWVIVDRLSKYAHFVALPANFTATSLANRFSSEICRLHGI 1173
W+ I+MDF+ GLP S WVIVDRL+K AHF+A+ A LA ++ SEI LHG+
Sbjct: 975 WDFITMDFVVGLPVSRTKDAIWVIVDRLTKSAHFLAIRKTDGAVLLAKKYVSEIVELHGV 1034
Query: 1174 PRSIVSDRDKIFLSHFWRDLFRVYGTKLRFSTAYHPETDGQTEVVNRGLETYLRCFAGEQ 1233
P SIVSDRD F S FWR GTK++ STAYHP+TDGQ+E + LE LR ++
Sbjct: 1035 PVSIVSDRDSKFTSAFWRAFQGEMGTKVQMSTAYHPQTDGQSERTIQTLEDMLRMCVLDR 1094
Query: 1234 PRSWYKFLHLAELWYNTSFHSAAGMTPFQAVYGRPPPSLLAYVP-GSSAIQSLDESLQQR 1292
W L L E YN S+ ++ M PF+A+YGRP + L + G +I D L +
Sbjct: 1095 GGHWADHLSLVEFAYNNSYQASIRMAPFEALYGRPCRTPLCWTQVGERSIYGADYVL-ET 1153
Query: 1293 T*ILESLKANLQRAQHRMKIQKDKSRREVTFEENAWVLLRLQPYR--QRSLAHRLSNKLA 1350
T + LK N++ AQ R + DK RRE+ FE V L++ R RS++ KL
Sbjct: 1154 TERIRVLKLNMKEAQDRQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSIS---ETKLT 1210
Query: 1351 KRFYGPFRVKRRIGSVAYELDLPPTSK-LHNVFHVSLL 1387
R+ GPFR+ R+G VAY L+LP + H VFHVS+L
Sbjct: 1211 PRYMGPFRIVERVGPVAYRLELPDVMRAFHKVFHVSML 1248
Score = 62.0 bits (149), Expect = 2e-09
Identities = 86/390 (22%), Positives = 155/390 (39%), Gaps = 69/390 (17%)
Query: 62 FDGSKPLE---WLFHAEQFFQLHQTPPAQRLELVSFYMQGDALSWYRWMHNNYQLSF--W 116
F G+ P E W E F + P R++L +++GDA W+R + + + W
Sbjct: 159 FGGTSPEEADSWKSRVEHNFGSSRCPAEYRVDLAVHFLEGDAHLWWRSVTARRRQAHMSW 218
Query: 117 EAFTRALAIRFGPS-AYENHQQELFKLQQTS-TVAEYQTRFEKVSNQVV-GLSPE-AVLD 172
F ++ P A + + +L Q +V EY+ F ++ G+ + A +
Sbjct: 219 ADFVAEFNAKYFPQEALDRMEARFLELTQGERSVREYEREFNRLLVYAGRGMQDDQAQMR 278
Query: 173 CFISGLVPEIKRELAILKPYSVSQAIGIAKQIEAKIKESRSSQQRVFRPNQSHFTSPSTA 232
F+ GL P+++ +L+ + + + A ++E + Q S A
Sbjct: 279 RFLRGLRPDLRVRCRVLQYATKAALVETAAEVEEDL--------------QRQVVGVSPA 324
Query: 233 IVPSQPRPLASSSQAPKPVASSSLPIKRLNSAQMQERRALG-LCFNCDEKYTIGHKCQPR 291
+ P + + + S+ KP AQ Q+R+ G L NC P+
Sbjct: 325 VKPKKTQQQVAPSKGGKP-------------AQGQKRKERGHLRPNC-----------PK 360
Query: 292 LFLLMLADEVQETQEAAISLLSDTVE---DVTVPVHEEAMHFQLSDQALHGRPSPRTLKF 348
L Q A++++ V+ V V + A H + Q R T K
Sbjct: 361 L------------QRMAVAVVQPAVQHGAQVQQRVQQLA-HIAAAPQGYTTREIGSTSK- 406
Query: 349 TAIVNGHPVVVLVDTGSSNNFVPPRTVSFLHLKVTPIPTF-PVMVGNGAHIPCAGYIPDI 407
AI H VL D+G+S+ F+ P + S +++ P V V G + G +
Sbjct: 407 RAITEAH---VLFDSGASHCFITPESASRGNIRGDPGEQLGAVKVAGGQFLAVLGRAKGV 463
Query: 408 EVTFAGNTFHIPFYVMDLQGADFVLGLDWL 437
++ AG + + + ++ D +LG+DWL
Sbjct: 464 DIQIAGESMPVDLIISPVELYDVILGMDWL 493
>At2g07660 putative retroelement pol polyprotein
Length = 949
Score = 371 bits (953), Expect = e-102
Identities = 185/392 (47%), Positives = 257/392 (65%), Gaps = 5/392 (1%)
Query: 528 LLQSYAPVFSTPHGLPPTRFHDHHINLLPNTPPVNVRPYRYPHSQKEAMATILTDMLQEG 587
++ ++ VF+ G+PP R I L P T P++ PYR ++ + L ++L +G
Sbjct: 122 IVNEFSDVFAAVSGVPPDRSDPFTIELEPGTTPISKAPYRMAPAEMAELKKQLEELLAKG 181
Query: 588 IVVPSTSPYSSPVLLIKKKDGTWRFCVDFRSLNSITIKDRFPIPTIDELLDELGGASHFS 647
+ PS+SP+ +PVL +KKKDG++R C+D+R LN +T+K+++P+P IDEL+D+LGGA FS
Sbjct: 182 FIRPSSSPWGAPVLFVKKKDGSFRLCIDYRGLNKVTVKNKYPLPRIDELMDQLGGAQWFS 241
Query: 648 KLDLRSGFHQIRLATEDTHKTAFRTVDGHYEFLVMPFGLTNAPSTFQAAMNDLLRPFLRR 707
K+DL SG+HQI + D KTAFRT GH+EF+VMPFGLTNAP+ F MN + R FL
Sbjct: 242 KIDLASGYHQIPIEPTDVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDE 301
Query: 708 FVLVFFDDILVYSPSLSAHMTHLKEVLEVLLSHKFYAKLSKCIFGVTSVSYLGHIISANG 767
FV++F DDILV+S S AH HL+ VLE L H+ +AKLSK F SV +LGH+IS G
Sbjct: 302 FVIIFIDDILVHSKSWEAHQEHLRAVLERLREHELFAKLSKFSFWQRSVGFLGHVISDQG 361
Query: 768 VGPDPSKVQAIVDWPVPRNLTALRGFLGLTGFYRRFIKNYAAHASHLTDLLKQDQKDKHT 827
V DP K+++I +WP PRN T +R FLGL G+YRRF+ ++A+ A LT L +D T
Sbjct: 362 VSVDPEKIRSIKEWPRPRNATEIRSFLGLAGYYRRFVMSFASMAQPLTRLTGKD-----T 416
Query: 828 LLPWSSAAADSFQHLKDLIISAPVLVLPDFSATFDIETDASGTAVGAVLSQKGHPISFFS 887
WS SF LK ++I+APVLVLP+ + + TDAS +G VL QKG I++ S
Sbjct: 417 AFNWSDECEKSFLELKAMLINAPVLVLPEEGEPYTVYTDASIVGLGCVLMQKGSVIAYAS 476
Query: 888 KKLTLQMQHQSTYVREMYAVTEAVKKWRQYLI 919
++L ++ T+ EM AV A+K WR YLI
Sbjct: 477 RQLRKHEKNYPTHDLEMAAVVFALKIWRSYLI 508
Score = 239 bits (610), Expect = 8e-63
Identities = 140/358 (39%), Positives = 198/358 (55%), Gaps = 8/358 (2%)
Query: 1035 VPEHDQWRTSILSEYHASPAAGHSGLKPTLARLMASFNWPGIQTETKTFIKQCLPCQYNK 1094
VP + IL E H S + H G L ++W G++ + ++ +C CQ K
Sbjct: 545 VPNDRALKEEILREAHQSKFSIHPGSNKMYRDLKRYYHWVGMRKDVARWVAKCPTCQLVK 604
Query: 1095 YVPAKKSGLLQPLPTPAQIWEDISMDFITGLPPS--HGHTVAWVIVDRLSKYAHFVALPA 1152
SGLLQ LP W+ I+MDF+T LP H WV+VDRL+K AHF+A+
Sbjct: 605 AEHQVPSGLLQNLPISEWKWDHITMDFVTRLPTGIKSKHNAVWVVVDRLTKSAHFMAISD 664
Query: 1153 NFTATSLANRFSSEICRLHGIPRSIVSDRDKIFLSHFWRDLFRVYGTKLRFSTAYHPETD 1212
A +A ++ EI RLHGIP SIVSDRD F S FW + GT++ STAYHP+TD
Sbjct: 665 KDGAEIIAEKYIDEIMRLHGIPVSIVSDRDTRFTSKFWNAFQKALGTRVNLSTAYHPQTD 724
Query: 1213 GQTEVVNRGLETYLRCFAGEQPRSWYKFLHLAELWYNTSFHSAAGMTPFQAVYGRPPPSL 1272
GQ+E + LE LR + +W K+L L E YN SF ++ GM+P++A+YGR +
Sbjct: 725 GQSERTIQTLEDMLRACVLDWGGNWEKYLRLIEFAYNNSFQASIGMSPYEALYGRACRTP 784
Query: 1273 LAYVPGSSAIQSLDESLQQRT*ILESLKANLQRAQHRMKIQKDKSRREVTFEENAWVLLR 1332
L + P + + T ++ LK L+ AQ R K +K R+E+ F+ V L+
Sbjct: 785 LCWTPVGERRLFGPTIVDETTERMKFLKIKLKEAQDRQKSYANKRRKELEFQVGDLVYLK 844
Query: 1333 LQPYRQRSLAHRLSN--KLAKRFYGPFRVKRRIGSVAYELDLPP-TSKLHNVFHVSLL 1387
Y+ A R ++ KL+ R+ GP++V R+G+VAY+LDLPP + HNVFHVS L
Sbjct: 845 AMTYKG---AGRFTSRKKLSPRYVGPYKVIERVGAVAYKLDLPPKLNVFHNVFHVSQL 899
>At2g05610 putative retroelement pol polyprotein
Length = 780
Score = 348 bits (893), Expect = 1e-95
Identities = 161/278 (57%), Positives = 209/278 (74%), Gaps = 1/278 (0%)
Query: 527 ELLQSYAPVFSTPHGLPPTRF-HDHHINLLPNTPPVNVRPYRYPHSQKEAMATILTDMLQ 585
+++ + +F P LPP R HDH I LL ++ PVN RPYRY QK + I+ DML
Sbjct: 9 KVVTEFPDIFVEPTDLPPFRAPHDHKIELLEDSNPVNQRPYRYVVHQKNEIDKIVDDMLA 68
Query: 586 EGIVVPSTSPYSSPVLLIKKKDGTWRFCVDFRSLNSITIKDRFPIPTIDELLDELGGASH 645
G + S+SPY+SPV+L+KKKDGTWR CVD+R LN +T+KDRFPIP I++L+DELGG++
Sbjct: 69 SGTIQASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDRFPIPLIEDLMDELGGSNV 128
Query: 646 FSKLDLRSGFHQIRLATEDTHKTAFRTVDGHYEFLVMPFGLTNAPSTFQAAMNDLLRPFL 705
+SK+DLR+G+HQ+R+ D HKTAF+T +GHYE+LVMPFGLTNAP++FQ+ MN +PFL
Sbjct: 129 YSKIDLRAGYHQVRMDPLDIHKTAFKTHNGHYEYLVMPFGLTNAPASFQSLMNSFFKPFL 188
Query: 706 RRFVLVFFDDILVYSPSLSAHMTHLKEVLEVLLSHKFYAKLSKCIFGVTSVSYLGHIISA 765
R+FVLVFFDDIL+YS S+ H HL+ V EV+ H +AK+SKC F V V YLGH IS
Sbjct: 189 RKFVLVFFDDILIYSTSMEEHKKHLEAVFEVMRVHHLFAKMSKCAFAVPRVEYLGHFISG 248
Query: 766 NGVGPDPSKVQAIVDWPVPRNLTALRGFLGLTGFYRRF 803
G+ DP+K++A+ DWPVP NL L GFLGLTG+YRRF
Sbjct: 249 EGIATDPAKIKAVQDWPVPVNLKQLCGFLGLTGYYRRF 286
Score = 254 bits (649), Expect = 2e-67
Identities = 143/333 (42%), Positives = 195/333 (57%), Gaps = 6/333 (1%)
Query: 861 FDIETDASGTAVGAVLSQKGHPISFFSKKLTLQMQHQSTYVREMYAVTEAVKKWRQYLIG 920
F +E DA G +GAVL Q+GHP++F S++L + H S Y +E+ AV V+KWR YLI
Sbjct: 287 FVVEMDACGHGIGAVLMQEGHPLAFISRQLKGKQLHLSIYEKELLAVIFVVRKWRHYLIS 346
Query: 921 HKFRIYTDQQSLKHLMTQTFQTPDQIKWATKLLGFDYEIFYKPGSENRVADALSRCHSSE 980
F I TDQ+SLK+L+ Q TP Q +W KLL FDYEI YK G EN VADALSR SE
Sbjct: 347 SHFIIKTDQRSLKYLLEQRLNTPIQQQWLPKLLEFDYEIQYKQGKENLVADALSRVEGSE 406
Query: 981 LPLLAAISSPVPEIITQLKQYYKTPEGIQLIV-----DKSTLPHFRVHHEVLYFKDGLFV 1035
+ L A+S +++ +++ Y T IQ I+ + H+ VL K+ + V
Sbjct: 407 V-LHMALSVVECDLLKEIQAGYVTDGDIQGIITILQQQADSKKHYTWSQGVLRRKNKIVV 465
Query: 1036 PEHDQWRTSILSEYHASPAAGHSGLKPTLARLMASFNWPGIQTETKTFIKQCLPCQYNKY 1095
P + + +IL H S GHSG + T R+ F W + + + FI+ C CQ K
Sbjct: 466 PNNSGIKDTILRWLHCSGMGGHSGKEVTHQRVKGLFYWKSMVKDIQAFIRSCGTCQQCKS 525
Query: 1096 VPAKKSGLLQPLPTPAQIWEDISMDFITGLPPSHGHTVAWVIVDRLSKYAHFVALPANFT 1155
A GLLQPLP P +IW D+SMDFI GLP S+G TV V+VDRLSK AHF+AL ++
Sbjct: 526 DNAASPGLLQPLPIPDRIWSDVSMDFIDGLPLSNGKTVIMVVVDRLSKAAHFIALAHPYS 585
Query: 1156 ATSLANRFSSEICRLHGIPRSIVSDRDKIFLSH 1188
A ++A + + +LHG P SIV ++ + H
Sbjct: 586 AMTVAQAYLDNVFKLHGCPSSIVVSSRRVLVQH 618
Score = 125 bits (315), Expect = 1e-28
Identities = 63/134 (47%), Positives = 91/134 (67%)
Query: 1254 SAAGMTPFQAVYGRPPPSLLAYVPGSSAIQSLDESLQQRT*ILESLKANLQRAQHRMKIQ 1313
S + MTP++AVYG+PPP L Y+PG S + + S+Q+R ++ LK +L RAQHRMK
Sbjct: 621 SHSTMTPYEAVYGQPPPLHLPYLPGESKVAVVARSMQERESMILFLKFHLMRAQHRMKQL 680
Query: 1314 KDKSRREVTFEENAWVLLRLQPYRQRSLAHRLSNKLAKRFYGPFRVKRRIGSVAYELDLP 1373
D+ E FE +V ++LQPYRQ+S+ R + KL+ +++GP++V R G VAY+L LP
Sbjct: 681 ADQHITEREFEVGDYVFVKLQPYRQQSVVMRSTQKLSPKYFGPYKVIDRCGEVAYKLQLP 740
Query: 1374 PTSKLHNVFHVSLL 1387
S++H VFHVS L
Sbjct: 741 ANSQVHPVFHVSQL 754
>At4g07850 putative polyprotein
Length = 1138
Score = 347 bits (890), Expect = 3e-95
Identities = 202/517 (39%), Positives = 279/517 (53%), Gaps = 54/517 (10%)
Query: 762 IISANGVGPDPSKVQAIVDWPVPRNLTALRGFLGLTGFYRRFIKNYAAHASHLTDLLKQD 821
+ S +GV D KV+AI +WP P+++ +R F GL GFYRRF+++++ A+ LT+++K
Sbjct: 531 VASTDGVKVDEEKVKAIREWPSPKSVGKVRSFHGLAGFYRRFVRDFSTLAAPLTEVIK-- 588
Query: 822 QKDKHTLLPWSSAAADSFQHLKDLIISAPVLVLPDFSATFDIETDASGTAVGAVLSQKGH 881
K+ W A D+FQ LK+ + APVL LPDF TF+IE DA G +GAVL Q
Sbjct: 589 ---KNVGFKWEQAPEDAFQALKEKLTHAPVLSLPDFLKTFEIECDAPGVGIGAVLMQDKK 645
Query: 882 PISFFSKKLTLQMQHQSTYVREMYAVTEAVKKWRQYLIGHKFRIYTDQQSLKHLMTQTFQ 941
PI++FS+KL + TY +E+YA+ A++ W+ YL +F I+TD +SLKHL Q
Sbjct: 646 PIAYFSEKLGGATLNYPTYDKELYALVRALQTWQHYLWPKEFVIHTDHESLKHLKGQQKL 705
Query: 942 TPDQIKWATKLLGFDYEIFYKPGSENRVADALSRCHSSELPLLAAISSPVPEIITQLKQY 1001
+W + F Y I YK G +N VADALSR H
Sbjct: 706 NKRHARWVEFIETFPYVIKYKKGKDNVVADALSRRH------------------------ 741
Query: 1002 YKTPEGIQLIVDKSTLPHFRVHHEVLYFKDGLFVPEHDQWRTSILSEYHASPAAGHSGLK 1061
EG L++ + L +P + R + E H GH G+
Sbjct: 742 ----EGF------------------LFYDNRLCIP-NSSLRELFIREAHGGGLMGHFGVS 778
Query: 1062 PTLARLMASFNWPGIQTETKTFIKQCLPCQYNKYVPAKKSGLLQPLPTPAQIWEDISMDF 1121
TL + F+WP ++ + + ++C C+ K ++ GL PLP P W DISMDF
Sbjct: 779 KTLKVMQDHFHWPHMKRDVERMCERCTTCKQAK-AKSQPHGLCTPLPIPLHPWNDISMDF 837
Query: 1122 ITGLPPSH-GHTVAWVIVDRLSKYAHFVALPANFTATSLANRFSSEICRLHGIPRSIVSD 1180
+ GLP + G +V+VDR SK AHF+ A +AN F E+ RLHG+P++IVSD
Sbjct: 838 VVGLPRTRTGKDSIFVVVDRFSKMAHFIPCHKTDDAMHIANLFFREVVRLHGMPKTIVSD 897
Query: 1181 RDKIFLSHFWRDLFRVYGTKLRFSTAYHPETDGQTEVVNRGLETYLRCFAGEQPRSWYKF 1240
RD FLS+FW+ L+ GTKL FST HP+TDGQTEVVNR L T LR + ++W
Sbjct: 898 RDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVNRTLSTLLRALIKKNLKTWEDC 957
Query: 1241 LHLAELWYNTSFHSAAGMTPFQAVYGRPPPSLLAYVP 1277
L E YN S HSA +PFQ VYG P + L +P
Sbjct: 958 LPHVEFAYNHSVHSATKFSPFQIVYGFNPITPLDLMP 994
Score = 58.9 bits (141), Expect = 2e-08
Identities = 30/85 (35%), Positives = 46/85 (53%), Gaps = 2/85 (2%)
Query: 530 QSYAPVF--STPHGLPPTRFHDHHINLLPNTPPVNVRPYRYPHSQKEAMATILTDMLQEG 587
+ Y VF P GLPP R +H I+ +P N YR + + + + ++++ G
Sbjct: 446 KDYQDVFPEENPEGLPPIRGIEHQIDFVPGASLPNRPAYRTNPVETKELEKQVNELMERG 505
Query: 588 IVVPSTSPYSSPVLLIKKKDGTWRF 612
+ S SP + PVLL+ KKDG+WRF
Sbjct: 506 HICESMSPCAVPVLLVPKKDGSWRF 530
>At4g16910 retrotransposon like protein
Length = 687
Score = 329 bits (843), Expect = 8e-90
Identities = 207/592 (34%), Positives = 305/592 (50%), Gaps = 40/592 (6%)
Query: 825 KHTLLPWSSAAADSFQHLKDLIISAPVLVLPDFSATFDIETDASGTAVGAVLSQKGHPIS 884
K T WS SF LK ++ +APVLVLP+ + + TDAS +G VL QKG I+
Sbjct: 11 KDTAFNWSEECERSFLELKAMLTNAPVLVLPEEGEPYTVYTDASIVGLGCVLIQKGSVIA 70
Query: 885 FFSKKLTLQMQHQSTYVREMYAVTEAVKKWRQYLIGHKFRIYTDQQSLKHLMTQTFQTPD 944
+ S++L ++ T EM AV A+K WR YL G K +I+TD +SLK++ TQ
Sbjct: 71 YASRQLRKHEKNYPTNDLEMAAVVFALKIWRSYLYGAKVQIFTDHKSLKYIFTQPELNLR 130
Query: 945 QIKWATKLLGFDYEIFYKPGSENRVADALSRCH------------------------SSE 980
Q +W + +D I Y PG N+V DALSR S E
Sbjct: 131 QRRWIKLVADYDLNIAYHPGKANQVVDALSRLRTVVEAERNQVNLVNMMGTLHLNALSKE 190
Query: 981 LPLLAAISSPVPEIITQLKQYYKTPEGIQLIVDKSTLPHFRVHHEVLYFKDGLFVPEHDQ 1040
+ L ++ +++++++ + E I+ + + ++ + + P
Sbjct: 191 VEPLGLRAANQADLLSRIRSAQERDEEIKGWAQNNKTEYQSSNNGTIVVNGRVCGPNDKA 250
Query: 1041 WRTSILSEYHASPAAGHSGLKPTLARLMASFNWPGIQTETKTFIKQCLPCQYNKYVPAKK 1100
+ IL E H S + H G L ++W G++ + ++ + VP
Sbjct: 251 LKEEILKEAHQSKFSIHPGSNKMYRDLKRYYHWVGMKKDVARWV-----AKEEHQVP--- 302
Query: 1101 SGLLQPLPTPAQIWEDISMDFITGLPPS--HGHTVAWVIVDRLSKYAHFVALPANFTATS 1158
SG+LQ LP P W+ I MDF+TGLP H WV+VDRL+K AHF+A+ A
Sbjct: 303 SGMLQNLPIPEWKWDHIMMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMAISDKDAAEI 362
Query: 1159 LANRFSSEICRLHGIPRSIVSDRDKIFLSHFWRDLFRVYGTKLRFSTAYHPETDGQTEVV 1218
+A ++ EI RLHGIP SIVSDRD F S FW+ +V GT++ STAYHP+TDGQ+E
Sbjct: 363 IAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFWKPFQKVLGTRVNLSTAYHPQTDGQSERT 422
Query: 1219 NRGLETYLRCFAGEQPRSWYKFLHLAELWYNTSFHSAAGMTPFQAVYGRPPPSLLAYVPG 1278
+ LE LR + +W K+L L E YN SF ++ GM+P++A+YGR + L + P
Sbjct: 423 IQTLEDMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRAGRTPLCWTPV 482
Query: 1279 SSAIQSLDESLQQRT*ILESLKANLQRAQHRMKIQKDKSRREVTFEENAWVLLRLQPYRQ 1338
+ + T ++ LK L+ AQ R K +K R+E+ F+ V L+ Y+
Sbjct: 483 GERRLFGPAVVDETTKKMKFLKIKLKEAQDRQKSYANKRRKELEFQVGDLVYLKAMTYKG 542
Query: 1339 RSLAHRLSN--KLAKRFYGPFRVKRRIGSVAYELDLPP-TSKLHNVFHVSLL 1387
A R ++ KL R+ GP++V R+G+VAY+LDLPP HNVFHVS L
Sbjct: 543 ---AGRFTSRKKLRPRYVGPYKVIERVGAVAYKLDLPPKLDAFHNVFHVSQL 591
>At4g08100 putative polyprotein
Length = 1054
Score = 269 bits (687), Expect = 9e-72
Identities = 145/348 (41%), Positives = 206/348 (58%), Gaps = 35/348 (10%)
Query: 615 DFRSLNSITIKDRFPIPTIDELLDELGGASHFSKLDLRSGFHQIRLATEDTHKTAFRTVD 674
D R++N+IT+K R PIP +D+ LD+L G+S FSK+DL+SG+HQ R+ D KTA +T
Sbjct: 527 DCRAINNITVKYRHPIPRLDDTLDKLHGSSIFSKIDLKSGYHQTRMKEGDEWKTAIKTKQ 586
Query: 675 GHYEFLVMPFGLTNAPSTFQAAMNDLLRPFLRRFVLVFFDDILVYSPSLSAHMTHLKEVL 734
YE+LVMPFGLTNAP+TF MN +LR + FV+V+FDDILVYS +L H+ HLK VL
Sbjct: 587 RLYEWLVMPFGLTNAPNTFMRLMNHVLRKHIGVFVIVYFDDILVYSKNLEYHVMHLKLVL 646
Query: 735 EVLLSHKFYAKLSKCIFGVTSVSYLGHIISANGVGPDPSKVQAIVDWPVPRNLTALRGFL 794
++L K YA L KC F ++ +LG ++SA+G+ D KV+AI +WP P+N++
Sbjct: 647 DLLRKEKLYANLKKCTFCTDNLVFLGFVVSADGIKVDEEKVKAIREWPNPKNVS------ 700
Query: 795 GLTGFYRRFIKNYAAHASHLTDLLKQDQKDKHTLLPWSSAAADSFQHLKDLIISAPVLVL 854
+K W A ++FQ LK+ + ++ V +L
Sbjct: 701 -----------------------------EKDIGFKWEDAQENAFQALKEKLTNSSVPIL 731
Query: 855 PDFSATFDIETDASGTAVGAVLSQKGHPISFFSKKLTLQMQHQSTYVREMYAVTEAVKKW 914
P+F +F+IE DASG +GAVL Q PI++FS+KL + TY +E+YA+ A++ W
Sbjct: 732 PNFMKSFEIECDASGLGIGAVLMQDHKPIAYFSEKLGGATLNYPTYDKELYALVRALQTW 791
Query: 915 RQYLIGHKFRIYTDQQSLKHLMTQTFQTPDQIKWATKLLGFDYEIFYK 962
+ YL KF I+TD +SLKHL Q +W + F Y I YK
Sbjct: 792 QHYLWPKKFVIHTDHESLKHLKGQQKLNKRHARWVEFIETFPYVIKYK 839
Score = 62.8 bits (151), Expect = 1e-09
Identities = 47/133 (35%), Positives = 69/133 (51%), Gaps = 6/133 (4%)
Query: 1253 HSAAGMTPFQAVYGRPPPSLLAYVPGSSAIQSLDESLQQRT*ILESLKANLQRAQHRMKI 1312
HSA +PF+ VYG P S L +P + +S + ++ + + L NL+ + K
Sbjct: 851 HSATKFSPFEIVYGFKPTSPLDLIPLPLSERSSLDGKKKDDLVQQVL--NLEARTKQYKK 908
Query: 1313 QKDKSRREVTFEENAWVLLRLQPYRQRSLAHRLSNKLAKRFYGPFRVKRRIGSVAYELDL 1372
+K R+EV F E V + L R++ S+KL R GPF+V +RI + AY+LDL
Sbjct: 909 YANKGRKEVIFNEGDQVWVHL---RKKRFPEVRSSKLMPRIDGPFKVLKRINNNAYKLDL 965
Query: 1373 PPTSKLH-NVFHV 1384
TS L N F V
Sbjct: 966 QDTSDLRTNPFQV 978
>At4g03650 putative reverse transcriptase
Length = 839
Score = 267 bits (683), Expect = 3e-71
Identities = 138/302 (45%), Positives = 184/302 (60%), Gaps = 5/302 (1%)
Query: 660 LATEDTHKTAFRTVDGHYEFLVMPFGLTNAPSTFQAAMNDLLRPFLRRFVLVFFDDILVY 719
LA D KTAFRT GH+EF+VMPFGLTNAP+ F MN + + FL FV++F DDILVY
Sbjct: 516 LAEADVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVY 575
Query: 720 SPSLSAHMTHLKEVLEVLLSHKFYAKLSKCIFGVTSVSYLGHIISANGVGPDPSKVQAIV 779
S S H HL+ V+E L K +AKLSKC F + +LGHI+SA GV DP K++AI
Sbjct: 576 SKSPEEHEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIR 635
Query: 780 DWPVPRNLTALRGFLGLTGFYRRFIKNYAAHASHLTDLLKQDQKDKHTLLPWSSAAADSF 839
DWP P N T +R FLGL G+YRRFIK +A+ A +T L +D WS + F
Sbjct: 636 DWPRPTNATEIRSFLGLAGYYRRFIKGFASMAQPMTKLTGKD-----VPFVWSPECEEGF 690
Query: 840 QHLKDLIISAPVLVLPDFSATFDIETDASGTAVGAVLSQKGHPISFFSKKLTLQMQHQST 899
LK+++ S PVL LP+ + + TDASG +G L Q+G I++ S++L + T
Sbjct: 691 VSLKEMLTSTPVLALPEHGEPYMVYTDASGVGLGCALMQRGKVIAYASRQLRKHEGNYPT 750
Query: 900 YVREMYAVTEAVKKWRQYLIGHKFRIYTDQQSLKHLMTQTFQTPDQIKWATKLLGFDYEI 959
+ EM AV A+K WR YL G K +++TD +SLK++ TQ Q +W + +D EI
Sbjct: 751 HDLEMAAVIFALKIWRSYLYGGKVQVFTDHKSLKYIFTQPELNLRQRRWMELVADYDLEI 810
Query: 960 FY 961
Y
Sbjct: 811 AY 812
Score = 39.3 bits (90), Expect = 0.016
Identities = 21/62 (33%), Positives = 32/62 (50%)
Query: 528 LLQSYAPVFSTPHGLPPTRFHDHHINLLPNTPPVNVRPYRYPHSQKEAMATILTDMLQEG 587
++Q + VF + GLPP+R I L P T P++ PYR ++ + L D+L E
Sbjct: 460 VVQEFQYVFQSLQGLPPSRSDPFTIELEPKTAPLSKAPYRMAPAKMAELKKQLEDLLAEA 519
Query: 588 IV 589
V
Sbjct: 520 DV 521
Score = 35.0 bits (79), Expect = 0.30
Identities = 13/19 (68%), Positives = 17/19 (89%)
Query: 1198 GTKLRFSTAYHPETDGQTE 1216
GTK++ ST YHP+TDGQ+E
Sbjct: 818 GTKVQMSTTYHPQTDGQSE 836
Score = 33.1 bits (74), Expect = 1.1
Identities = 32/155 (20%), Positives = 67/155 (42%), Gaps = 9/155 (5%)
Query: 64 GSKPLE---WLFHAEQFFQLHQTPPAQRLELVSFYMQGDALSWYRWM---HNNYQLSFWE 117
G+ P E W E+ F + P R++L +++GDA W+R + +S+ +
Sbjct: 159 GTSPEEADSWRSQVERNFGSSRCPAEYRVDLTVHFLEGDAHLWWRSVTARRRQADMSWAD 218
Query: 118 AFTRALAIRFGPSAYENHQQELFKLQQ-TSTVAEYQTRFEKVSNQV-VGL-SPEAVLDCF 174
A F A + + +L Q +V EY +F ++ G+ +A + F
Sbjct: 219 FMAEFNAKYFPREALDRMEARFLELTQGVRSVREYDRKFNRLLVYAGRGMEDDQAQMRRF 278
Query: 175 ISGLVPEIKRELAILKPYSVSQAIGIAKQIEAKIK 209
+ GL P ++ + + + + + A ++E ++
Sbjct: 279 LRGLRPNLRVRCRVSQYATKAALVETAAEVEEDLQ 313
>At2g14640 putative retroelement pol polyprotein
Length = 945
Score = 253 bits (645), Expect = 7e-67
Identities = 124/230 (53%), Positives = 161/230 (69%)
Query: 1158 SLANRFSSEICRLHGIPRSIVSDRDKIFLSHFWRDLFRVYGTKLRFSTAYHPETDGQTEV 1217
S+A +F S + +LHGIPRSIVSD D IF+S FW++ +++ TKL STAYHP+TDGQTEV
Sbjct: 633 SVAAKFVSHVVKLHGIPRSIVSDCDPIFMSLFWQEFWKLSRTKLWMSTAYHPQTDGQTEV 692
Query: 1218 VNRGLETYLRCFAGEQPRSWYKFLHLAELWYNTSFHSAAGMTPFQAVYGRPPPSLLAYVP 1277
VNR +E +LRCF P+ W F+ AE WYNT+FH++ GMTPFQA+YGRPP + AY
Sbjct: 693 VNRCIEQFLRCFVHYHPKQWSSFIPWAEYWYNTTFHASTGMTPFQALYGRPPSPIPAYEL 752
Query: 1278 GSSAIQSLDESLQQRT*ILESLKANLQRAQHRMKIQKDKSRREVTFEENAWVLLRLQPYR 1337
GS L+E + R +L LK +L A + MK Q D R+V+F+ WVLLR+QPYR
Sbjct: 753 GSVVCGELNEQMAARDELLAELKQHLVTANNCMKQQADSRLRDVSFQVGDWVLLRIQPYR 812
Query: 1338 QRSLAHRLSNKLAKRFYGPFRVKRRIGSVAYELDLPPTSKLHNVFHVSLL 1387
Q++L R S KL+ RFYGPF+V + G VAY L LP +++H VFHVSLL
Sbjct: 813 QKTLFRRSSQKLSHRFYGPFQVASKHGEVAYRLTLPEGTRIHPVFHVSLL 862
Score = 219 bits (559), Expect = 7e-57
Identities = 138/382 (36%), Positives = 196/382 (51%), Gaps = 55/382 (14%)
Query: 336 ALHGRPSPRTLKFTAIVNGHPVVVLVDTGSSNNFVPPRTVSFLHLKVTPIPTFPVMVGNG 395
AL G + T++ A ++ + ++ L+++GS++NF+ + V ++LK T F V V NG
Sbjct: 308 ALEGVDTTSTIRVRATIHRNRLIALINSGSTHNFIGEKAVRGMNLKATTTKPFTVRVVNG 367
Query: 396 AHIPCAGYIPDIEVTFAGNTFHIPFYVMDLQGADFVLGLDWLKTLGKVISDFSIPSMSFV 455
+ C I V G F + Y + L G D +G+ WL TLG + ++ ++ F
Sbjct: 368 MPLVCRSRYEAIPVVMGGVVFPVTLYALPLMGLDLAMGVQWLSTLGPTLCNWKEQTLQFH 427
Query: 456 VNGKTCTLEG---EPLPPPSHASFNHFQRLIHTD-AIAECHTITFLPSPPSTPSPQFLTL 511
G L G L H + R+ HT AI H S P+TP
Sbjct: 428 WAGDEVRLMGIKPTGLRGVEHKTITKKARMGHTIFAITMAHN----SSDPNTP------- 476
Query: 512 ENLSTPPPDFDPALWELLQSYAPVFSTPHGLPPTRFHDHHINLLPNTPPVNVRPYRYPHS 571
D + +L++ +A +F TP LP R H I L T PVNVRPYRY
Sbjct: 477 ----------DGEIKKLIEEFAGLFETPTQLPSERPIVHRIALKKGTDPVNVRPYRYAFY 526
Query: 572 QKEAMATILTDMLQEGIVVPSTSPYSSPVLLIKKKDGTWRFCVDFRSLNSITIKDRFPIP 631
QK+ M+ + GI+ PS+SP+ SPVLL +RFPIP
Sbjct: 527 QKDEMS-------RAGIIRPSSSPFLSPVLL-----------------------ERFPIP 556
Query: 632 TIDELLDELGGASHFSKLDLRSGFHQIRLATEDTHKTAFRTVDGHYEFLVMPFGLTNAPS 691
T+D++LDEL GA +F+KLDL +G+ Q+R+ + D K AF+T +GHYE+LVMPFGL NAPS
Sbjct: 557 TVDDMLDELNGAVYFTKLDLTAGYQQVRMHSPDIPKIAFQTHNGHYEYLVMPFGLCNAPS 616
Query: 692 TFQAAMNDLLRPFLRRFVLVFF 713
TFQA MN++ P L R V F
Sbjct: 617 TFQALMNEIFWPLLSRSVAAKF 638
Score = 67.8 bits (164), Expect = 4e-11
Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 28/177 (15%)
Query: 36 PPLGFNSPPQTNPQTLPKSLKLQLTSFDGSKPLEWLFHAEQFFQLHQTPPAQRLELVSFY 95
P F + N + + KL F G +WL A+Q+F+ H+ P Q + +F+
Sbjct: 85 PDNPFAAVTANNNNAIARPSKLDFPRFHGGDLTKWLSKAKQYFEYHEGPVEQAVRFTTFH 144
Query: 96 MQGDALSWYRWMHNNYQLSFWEAFTRALAIRFGPSAYENHQQELFKLQQTSTVAEYQTRF 155
+ G A W W+A R A + QT +++EYQ F
Sbjct: 145 LDGVANGW------------WQATLRRSAT----------------IGQTGSLSEYQHEF 176
Query: 156 EKVSNQVVGLSPEAVLDCFISGLVPEIKRELAILKPYSVSQAIGIAKQIEAKIKESR 212
E + N+V G + E ++ F++GL I + + +P S+ + I + + K K+ R
Sbjct: 177 EWLQNKVYGWTQEVLVGAFMNGLYYSISNGIRMFQPRSLREVINLRVGWKGKSKDRR 233
>At4g07830 putative reverse transcriptase
Length = 611
Score = 244 bits (623), Expect = 2e-64
Identities = 170/533 (31%), Positives = 252/533 (46%), Gaps = 63/533 (11%)
Query: 878 QKGHPISFFSKKLTLQMQHQSTYVREMYAVTEAVKKWRQYLIGHKFRIYTDQQSLKHLMT 937
Q+G I++ S++L + T+ EM AV +TD +SLK++ T
Sbjct: 2 QRGKVIAYGSRQLKKHEGNYPTHDLEMAAV------------------FTDHKSLKYIFT 43
Query: 938 QTFQTPDQIKWATKLLGFDYEIFYKPGSENRVADALSRCHSSELPLLAAISSPVPEIITQ 997
Q +W + +D EI Y PG N V DALSR P + + + +
Sbjct: 44 QLELNLRLRRWMKLVADYDLEIAYHPGKANVVTDALSRKRVGAAPGQSVETLVIEIGALR 103
Query: 998 LKQYYKTPEGIQLIVDKSTLPHFRVHHE----------------------VLYFKDGLFV 1035
L + P G++ + L ++ E + + V
Sbjct: 104 LCAVAREPLGLEAVDQTDLLSRVQLAQEKDEGLIAASKAEGFEYQFAANGTILVHGRVCV 163
Query: 1036 PEHDQWRTSILSEYHASPAAGHSGLKPTLARLMASFNWPGIQTETKTFIKQCLPCQYNKY 1095
P+ + R ILSE HAS + H G L + W G++ + ++++C CQ K
Sbjct: 164 PKDKELRQEILSEAHASMFSIHPGATKMYRDLKRYYQWVGMKRDVGNWVEECDVCQLVKI 223
Query: 1096 VPAKKSGLLQPLPTPAQIWEDISMDFITGLPPSHGHTVAWVIVDRLSKYAHFVALPANFT 1155
LLQ LP P W+ I+MDF+ GLP S WVIVDRL+K AHF+A+
Sbjct: 224 EHQVSGSLLQSLPIPEWKWDFITMDFVVGLPVSRTKDAIWVIVDRLTKSAHFLAIRKTDG 283
Query: 1156 ATSLANRFSSEICRLHGIPRSIVSDRDKIFLSHFWRDLFRVYGTKLRFSTAYHPETDGQT 1215
A LA ++ SEI +LHG+P SIVSDRD F S FWR GTK++ STAYHP+TDGQ+
Sbjct: 284 AAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQAEMGTKVQMSTAYHPQTDGQS 343
Query: 1216 EVVNRGLETYLRCFAGEQPRSWYKFLHLAELWYNTSFHSAAGMTPFQAVYGRPPPSLLAY 1275
E + LE LR + W L L E YN S+ ++ GM PF+ +YGRP +L
Sbjct: 344 ERTIQTLEDMLRMCVLDWRGHWADHLSLVEFAYNNSYQASIGMAPFEVLYGRPCRTLCWT 403
Query: 1276 VPGSSAIQSLDESLQQRT*ILESLKANLQRAQHRMKIQKDKSRREVTFEENAWVLLRLQP 1335
G +I D +Q+ T + LK N++ AQ+R + DK R+E+ FE
Sbjct: 404 QVGERSIYGAD-YVQEITERIRVLKLNMKEAQNRQRSYADKRRKELEFE----------- 451
Query: 1336 YRQRSLAHRLSNKLAKRFYGPFRVKRRIGSVAYELDLPPTSK-LHNVFHVSLL 1387
+ + +++ + R ++R+G VA+ L+L + H VFHVS+L
Sbjct: 452 ---------VGDSVSQDGH-VARSEQRVGPVAFRLELSDVMRAFHKVFHVSML 494
>At1g20390 hypothetical protein
Length = 1791
Score = 209 bits (531), Expect = 1e-53
Identities = 137/444 (30%), Positives = 222/444 (49%), Gaps = 19/444 (4%)
Query: 550 HHINLLPNTPPVNVRPYRYPHSQKEAMATILTDMLQEGIVVPSTSP--YSSPVLLIKKKD 607
H +N+ P PV + + + A+ + +L+ G ++ P ++PV+ +KKK+
Sbjct: 767 HELNVDPTFKPVKQKRRKLGPERARAVNEEVEKLLKAGQIIEVKYPEWLANPVV-VKKKN 825
Query: 608 GTWRFCVDFRSLNSITIKDRFPIPTIDELLDELGGASHFSKLDLRSGFHQIRLATEDTHK 667
G WR CVD+ LN KD +P+P ID L++ G S +D SG++QI + +D K
Sbjct: 826 GKWRVCVDYTDLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEK 885
Query: 668 TAFRTVDGHYEFLVMPFGLTNAPSTFQAAMNDLLRPFLRRFVLVFFDDILVYSPSLSAHM 727
T+F T G Y + VM FGL NA +T+Q +N +L + R V V+ DD+LV S H+
Sbjct: 886 TSFVTDRGTYCYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHV 945
Query: 728 THLKEVLEVLLSHKFYAKLSKCIFGVTSVSYLGHIISANGVGPDPSKVQAIVDWPVPRNL 787
HL + +VL ++ +KC FGVTS +LG++++ G+ +P +++AI++ P PRN
Sbjct: 946 EHLSKCFDVLNTYGMKLNPTKCTFGVTSGEFLGYVVTKRGIEANPKQIRAILELPSPRNA 1005
Query: 788 TALRGFLGLTGFYRRFIKNYAAHASHLTDLLKQDQKDKHTLLPWSSAAADSFQHLKDLII 847
++ G RFI +LLK + W + ++F+ LKD +
Sbjct: 1006 REVQRLTGRIAALNRFISRSTDKCLPFYNLLK-----RRAQFDWDKDSEEAFEKLKDYLS 1060
Query: 848 SAPVLVLPDFSATFDIETDASGTAVGAVLSQKG----HPISFFSKKLTLQMQHQSTYVRE 903
+ P+LV P+ T + S AV +VL ++ PI + SK L +
Sbjct: 1061 TPPILVKPEVGETLYLYIAVSDHAVSSVLVREDRGEQRPIFYTSKSLVEAETRYPVIEKA 1120
Query: 904 MYAVTEAVKKWRQYLIGHKFRIYTDQQSLKHLMTQTFQTPDQIKWATKLLGFDYEIFYKP 963
AV + +K R Y H + TD Q L+ + Q+ KWA +L +D + +P
Sbjct: 1121 ALAVVTSARKLRPYFQSHTIAVLTD-QPLRVALHSPSQSGRMTKWAVELSEYDIDFRPRP 1179
Query: 964 GSENRV-ADALSRCHSSELPLLAA 986
+++V AD L ELPL +A
Sbjct: 1180 AMKSQVLADFL-----IELPLQSA 1198
Score = 80.9 bits (198), Expect = 5e-15
Identities = 68/249 (27%), Positives = 107/249 (42%), Gaps = 14/249 (5%)
Query: 1045 ILSEYHASPAAGHSGLKPTLARLMA-SFNWPGIQTETKTFIKQCLPCQYNKYVPAKKSGL 1103
I+ E H A HSG + +L F WP + ++ KTF +C CQ + + + L
Sbjct: 1438 IMKETHEGAAGNHSGGRALALKLKKLGFYWPTMISDCKTFTAKCEQCQRHAPTIHQPTEL 1497
Query: 1104 LQP--LPTPAQIWEDISMDFITGLPPSHGHTVAWVIVDRLSKYAHFVALPANFTATSLAN 1161
L+ P P W +MD + +P S V+ D +K+ + A A + N
Sbjct: 1498 LRAGVAPYPFMRW---AMDIVGPMPASRQKRFILVMTDYFTKWVEAESY-ATIRANDVQN 1553
Query: 1162 RFSSEICRLHGIPRSIVSDRDKIFLSHFWRDLFRVYGTKLRFSTAYHPETDGQTEVVNRG 1221
I HG+P I++D F+S + + + +L ST +P+ +GQ E N+
Sbjct: 1554 FVWKFIICRHGLPYEIITDNGSQFISLSFENFCASWKIRLNKSTPRYPQGNGQAEATNKT 1613
Query: 1222 LETYLRCFAGEQPRSWYKFLHLAELW-YNTSFHSAAGMTPFQAVYGRPPPSLLAYVPGSS 1280
+ + L+ E+ +W L LW Y T+ SA TPF YG + A P
Sbjct: 1614 ILSGLKKRLDEKKGAWADELD-GVLWSYRTTPRSATDQTPFAHAYG-----MEAMAPAEV 1667
Query: 1281 AIQSLDESL 1289
SL S+
Sbjct: 1668 GYSSLRRSM 1676
>At4g04230 putative transposon protein
Length = 315
Score = 191 bits (486), Expect = 2e-48
Identities = 93/168 (55%), Positives = 121/168 (71%)
Query: 584 LQEGIVVPSTSPYSSPVLLIKKKDGTWRFCVDFRSLNSITIKDRFPIPTIDELLDELGGA 643
+ +G + S SP + PVLL+ KKDGTWR C+D R++N+ITIK R PIP + ++LDEL GA
Sbjct: 125 IHKGYIRESLSPCAVPVLLVPKKDGTWRMCLDCRAINNITIKYRHPIPRLYDMLDELSGA 184
Query: 644 SHFSKLDLRSGFHQIRLATEDTHKTAFRTVDGHYEFLVMPFGLTNAPSTFQAAMNDLLRP 703
FSK+DLRSG+HQ+R+ D KTAF+T G YE LVMPFGLTNAPSTF MN +LR
Sbjct: 185 IIFSKVDLRSGYHQVRMREGDEWKTAFKTKQGLYECLVMPFGLTNAPSTFMRLMNQVLRS 244
Query: 704 FLRRFVLVFFDDILVYSPSLSAHMTHLKEVLEVLLSHKFYAKLSKCIF 751
F+ +FV+V+FDDIL+Y+ S S H+ L+ +L+ L YA L KC F
Sbjct: 245 FIGKFVVVYFDDILIYNKSYSDHIQPLELILKTLRKEGLYANLKKCTF 292
>At2g14040 putative retroelement pol polyprotein
Length = 841
Score = 173 bits (438), Expect = 7e-43
Identities = 133/424 (31%), Positives = 196/424 (45%), Gaps = 76/424 (17%)
Query: 583 MLQEGIVVP-STSPYSSPVLLIKKKDGT------------------WRFCVDFRSLNSIT 623
+L GI+ P S S + SPV ++ KK G R C+D+R LNS T
Sbjct: 397 LLDAGIIYPISDSTWVSPVHVVPKKGGVIVIKNEKNELIPTRTVTGHRMCIDYRKLNSAT 456
Query: 624 IKDRFPIPTIDELLDELGGASHFSKLDLRSGFHQIRLATEDTHKTAFRTVDGHYEFLVMP 683
KD FP+ ID++L+ L ++ LD GF QI + +D KT F G + + MP
Sbjct: 457 RKDNFPLSFIDQMLERLSNQPYYCFLDGYLGFFQILIHPDDQEKTTFTCPYGTFAYRRMP 516
Query: 684 FGLTNAPSTFQAAMNDLLRPFLRRFVLVFFDDILVYSPSLSAHMTHLKEVLEVLLSHKFY 743
FGL NAP+TFQ M + + F+ VF DD LV H+ VL SH
Sbjct: 517 FGLCNAPATFQHCMKYIFSDMIEDFMEVFIDDFLVLQRCEDKHL-----VLNWEKSH--- 568
Query: 744 AKLSKCIFGVTSVSYLGHIISANGVGPDPSKVQAIVDWPVPRNLTALRGFLGLTGFYRRF 803
F V LGH IS GV D +K++ + FLG GFYRRF
Sbjct: 569 -------FMVRDGIVLGHKISEKGVEVDRAKIE-------------IMRFLGHAGFYRRF 608
Query: 804 IKNYAAHASHLTDLLKQDQKDKHTLLPWSSAAADSFQHLKDLIISAPVLVLPDFSATFDI 863
IK+++ A T LL ++QK + + +F +K+ ++SA ++ P++ F++
Sbjct: 609 IKDFSKIARPCTQLLCKEQKSE-----FDDTCLQAFNIVKESLVSALIVQPPEWELPFEV 663
Query: 864 ETDASGTAVGAVLSQKGHPISFFSKKLTLQMQHQSTYVREMYAVTEAVKKWRQYLIGHKF 923
DAS VGAVL Q+ ++++A+ A + L G +
Sbjct: 664 ICDASDYVVGAVLGQRKD--------------------KKLHAIYYASRT----LDGAQV 699
Query: 924 RIYTDQQSLKHLMTQTFQTPDQIKWATKLLGFDYEIFYKPGSENRVADALSRCHSSELPL 983
++T +L++L+++ P ++W L FD EI K G EN VAD LSR E L
Sbjct: 700 IVHTVHAALRYLLSKKDAKPRLLRWILLLQDFDLEIKDKKGIENEVADNLSRLRVQEEVL 759
Query: 984 LAAI 987
+ I
Sbjct: 760 MRDI 763
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.322 0.136 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,485,232
Number of Sequences: 26719
Number of extensions: 1479919
Number of successful extensions: 4534
Number of sequences better than 10.0: 107
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 4086
Number of HSP's gapped (non-prelim): 321
length of query: 1387
length of database: 11,318,596
effective HSP length: 112
effective length of query: 1275
effective length of database: 8,326,068
effective search space: 10615736700
effective search space used: 10615736700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)
Lotus: description of TM0007.12