TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0590a.3
         (270 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC85300 homologue to PIR|S33775|S33775 chlorophyll a/b-binding p...   506  e-144
TC85298 homologue to SP|P27520|CB23_PEA Chlorophyll A-B binding ...   360  e-100
TC76508 GP|3293555|gb|AAC25775.1| chlorophyll a/b binding protei...   357  2e-99
TC76504 homologue to GP|506629|gb|AAA50172.1|| photosystem II ty...   354  2e-98
TC76503 homologue to GP|506629|gb|AAA50172.1|| photosystem II ty...   354  2e-98
TC76507 homologue to GP|506629|gb|AAA50172.1|| photosystem II ty...   352  9e-98
TC76505 homologue to GP|9587207|gb|AAF89207.1| LHCII type I chlo...   351  2e-97
TC76506 homologue to GP|506629|gb|AAA50172.1|| photosystem II ty...   350  4e-97
TC82383 similar to GP|15430554|dbj|BAB64412. light-harvesting ch...   234  3e-62
BG456653 homologue to GP|3293555|gb| chlorophyll a/b binding pro...   218  3e-57
CA919263 similar to GP|12658406|gb light-harvesting complex II p...   216  1e-56
TC76645 similar to PIR|S16294|S16294 chlorophyll a/b-binding pro...   198  2e-51
BG456494 homologue to GP|2645999|gb| chlorophyll a/b binding pro...   168  2e-42
TC90290 similar to SP|P22686|CB2_CHLMO Chlorophyll A-B binding p...   164  3e-41
TC76509 homologue to PIR|S29904|S29904 chlorophyll a/b-binding p...   146  7e-36
TC76609 homologue to PIR|T06411|T06411 probable chlorophyll a/b-...   137  3e-33
TC92187 similar to GP|12658406|gb|AAK01125.1 light-harvesting co...   134  3e-32
TC85508 homologue to PIR|S60608|S60608 chlorophyll a/b-binding p...   127  6e-30
TC79544 similar to PIR|F96510|F96510 light-harvesting complex pr...   120  4e-28
TC76818 homologue to GP|13265501|gb|AAG40043.2 AT3g54890 {Arabid...   119  1e-27

>TC85300 homologue to PIR|S33775|S33775 chlorophyll a/b-binding protein -
           garden pea, partial (96%)
          Length = 1163

 Score =  506 bits (1302), Expect = e-144
 Identities = 243/265 (91%), Positives = 254/265 (95%)
 Frame = +3

Query: 6   MAATTASSGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKYLGPFS 65
           MA   ASS  V+K +PFLGQ KG+ +N LRDVV+MGT ++TMGN+LWYGPDRVKYLGPFS
Sbjct: 162 MALMAASSAAVVKQTPFLGQRKGA-ANPLRDVVAMGTSRFTMGNELWYGPDRVKYLGPFS 338

Query: 66  AQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWV 125
           AQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWV
Sbjct: 339 AQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWV 518

Query: 126 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPG 185
           RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGLPG
Sbjct: 519 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPG 698

Query: 186 VGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 245
           VGEGNNLYPGGQYFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 699 VGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 878

Query: 246 NLLDHLDDPVANNAWVYATKFVPGS 270
           NLLDH+D+PVANNAWVYATKFVPGS
Sbjct: 879 NLLDHIDNPVANNAWVYATKFVPGS 953


>TC85298 homologue to SP|P27520|CB23_PEA Chlorophyll A-B binding protein 215
            chloroplast precursor (LHCII type II CAB-215) (LHCP).,
           complete
          Length = 1099

 Score =  360 bits (924), Expect = e-100
 Identities = 185/264 (70%), Positives = 206/264 (77%), Gaps = 9/264 (3%)
 Frame = +2

Query: 15  TVIKPSPFLGQTKGSNSNT-LRDVVSMGTGKYTMGN-------DLWYGPDRVKYLGPFSA 66
           + I+ S F G+T     N  +R   S G  ++TM          +WYGPDR KYLGPFS 
Sbjct: 68  SAIQQSAFTGKTGLKQGNEFIRKAGSFGQSRFTMRRTVKSAPESIWYGPDRPKYLGPFSE 247

Query: 67  QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVR 126
           Q PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC  PE+LEK   
Sbjct: 248 QIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEK-NG 424

Query: 127 VDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGV 186
           V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+   QV+LMG VEG+R+ G P +
Sbjct: 425 VKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGP-L 601

Query: 187 GEG-NNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 245
           GEG + LYPGG  FDPLGLADDP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP++
Sbjct: 602 GEGLDPLYPGGA-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVQ 778

Query: 246 NLLDHLDDPVANNAWVYATKFVPG 269
           NL DH+ DPVANNAW YAT FVPG
Sbjct: 779 NLYDHVADPVANNAWAYATNFVPG 850


>TC76508 GP|3293555|gb|AAC25775.1| chlorophyll a/b binding protein {Medicago
           sativa}, complete
          Length = 1190

 Score =  357 bits (917), Expect = 2e-99
 Identities = 188/270 (69%), Positives = 208/270 (76%), Gaps = 1/270 (0%)
 Frame = +2

Query: 1   MAATLMAATTAS-SGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVK 59
           MAA+ MA ++ + +G  +K +P   Q  G+   T+R   +  T K       WYGPDRVK
Sbjct: 77  MAASSMALSSPTLAGKPVKLTPS-SQELGAARFTMRKAAT--TKKVASSGSPWYGPDRVK 247

Query: 60  YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPE 119
           YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE
Sbjct: 248 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 427

Query: 120 VLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFR 179
           +L +   V F E VWFKAGSQIFSEGGLDYLGNP+LVHAQSILA+   QV+LMG VEG+R
Sbjct: 428 LLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR 604

Query: 180 INGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVT 239
           I G P     + LYPGG  FDPLGLADDP  FAELKVKE+KNGRLAMFSMFGFFVQAIVT
Sbjct: 605 IAGGPLGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVT 781

Query: 240 GKGPLENLLDHLDDPVANNAWVYATKFVPG 269
           GKGPLENL DHL DPV NNAW YAT FVPG
Sbjct: 782 GKGPLENLADHLADPVNNNAWAYATNFVPG 871


>TC76504 homologue to GP|506629|gb|AAA50172.1|| photosystem II type I
           chlorophyll a/b-binding protein {Glycine max}, complete
          Length = 1134

 Score =  354 bits (909), Expect = 2e-98
 Identities = 187/270 (69%), Positives = 205/270 (75%), Gaps = 1/270 (0%)
 Frame = +1

Query: 1   MAATLMAATTASS-GTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVK 59
           MAA+ M+ +++S  G  IK SP   Q  G    T+R      T K       WYGPDRVK
Sbjct: 46  MAASTMSLSSSSFVGKAIKLSPST-QDIGVGRVTMRKTT---TKKSVPSGSPWYGPDRVK 213

Query: 60  YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPE 119
           YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE
Sbjct: 214 YLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 393

Query: 120 VLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFR 179
           +L +   V F E VWFKAGSQIFSEGGLDYLGNP+LVHAQSILA+   QV+LMG VEG+R
Sbjct: 394 LLSR-NGVQFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYR 570

Query: 180 INGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVT 239
           I G P     + LYPGG  FDPLGLA+DP  FAELKVKE+KNGRLAMFSMFGFFVQAIVT
Sbjct: 571 IAGGPLGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVT 747

Query: 240 GKGPLENLLDHLDDPVANNAWVYATKFVPG 269
           GKGP+ENL DHL DPV NNAW YAT F PG
Sbjct: 748 GKGPIENLADHLADPVNNNAWAYATNFAPG 837


>TC76503 homologue to GP|506629|gb|AAA50172.1|| photosystem II type I
           chlorophyll a/b-binding protein {Glycine max}, partial
           (98%)
          Length = 1148

 Score =  354 bits (908), Expect = 2e-98
 Identities = 187/270 (69%), Positives = 205/270 (75%), Gaps = 1/270 (0%)
 Frame = +1

Query: 1   MAATLMAATTASS-GTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVK 59
           MAA+ M+ +++S  G  IK SP   Q  G    T+R      T K       WYGPDRVK
Sbjct: 55  MAASTMSLSSSSFVGKAIKLSPST-QDIGVGRVTMRKAT---TKKSVPSGSPWYGPDRVK 222

Query: 60  YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPE 119
           YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE
Sbjct: 223 YLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 402

Query: 120 VLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFR 179
           +L +   V F E VWFKAGSQIFSEGGLDYLGNP+LVHAQSILA+   QV+LMG VEG+R
Sbjct: 403 LLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYR 579

Query: 180 INGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVT 239
           I G P     + LYPGG  FDPLGLA+DP  FAELKVKE+KNGRLAMFSMFGFFVQAIVT
Sbjct: 580 IAGGPLGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVT 756

Query: 240 GKGPLENLLDHLDDPVANNAWVYATKFVPG 269
           GKGP+ENL DHL DPV NNAW YAT F PG
Sbjct: 757 GKGPIENLADHLADPVNNNAWAYATNFAPG 846


>TC76507 homologue to GP|506629|gb|AAA50172.1|| photosystem II type I
           chlorophyll a/b-binding protein {Glycine max}, complete
          Length = 1029

 Score =  352 bits (903), Expect = 9e-98
 Identities = 186/273 (68%), Positives = 207/273 (75%), Gaps = 4/273 (1%)
 Frame = +1

Query: 1   MAATLMAATTASS-GTVIKPSPFLGQTKGSNSNTLRDVVSMG---TGKYTMGNDLWYGPD 56
           MAA+ MA +++S  G  IK SP       S  + +   ++M    T K       WYGPD
Sbjct: 82  MAASTMALSSSSMVGKAIKLSP-------STPDLVMGRITMRKTTTKKTAPSGSQWYGPD 240

Query: 57  RVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCI 116
           RVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+
Sbjct: 241 RVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCV 420

Query: 117 TPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVE 176
            PE+L +   V F E VWFKAGSQIFSEGGLDYLGNP+LVHAQSILA+   QV+LMG VE
Sbjct: 421 FPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVE 597

Query: 177 GFRINGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQA 236
           G+RI G P     + LYPGG  FDPLGLA+DP  FAELKVKE+KNGRLAMFSMFGFFVQA
Sbjct: 598 GYRIAGGPLGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQA 774

Query: 237 IVTGKGPLENLLDHLDDPVANNAWVYATKFVPG 269
           IVTGKGPLENL DH+ DPV NNAW +AT FVPG
Sbjct: 775 IVTGKGPLENLADHIADPVNNNAWAFATNFVPG 873


>TC76505 homologue to GP|9587207|gb|AAF89207.1| LHCII type I chlorophyll
           a/b-binding protein {Vigna radiata}, complete
          Length = 1082

 Score =  351 bits (900), Expect = 2e-97
 Identities = 185/275 (67%), Positives = 207/275 (75%), Gaps = 6/275 (2%)
 Frame = +1

Query: 1   MAATLMAATTASS-GTVIKPSP-----FLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYG 54
           MAA+ M+ +++S  G  IK SP      +G+     + T ++V S            WYG
Sbjct: 64  MAASTMSLSSSSLVGKAIKLSPSTPDLVMGRITMRKTTTKKNVPS---------GSPWYG 216

Query: 55  PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALG 114
           PDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE F+KNR LEVIH RWAMLGALG
Sbjct: 217 PDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALG 396

Query: 115 CITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGL 174
           C+ PE+L +   V F E VWFKAGSQIFSEGGLDYLGNP+LVHAQSILA+   QV+LMG 
Sbjct: 397 CVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGA 573

Query: 175 VEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFV 234
           VEG+RI G P     + LYPGG  FDPLGLADDP  FAELKVKE+KNGRLAMFSMFGFFV
Sbjct: 574 VEGYRIAGGPLGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV 750

Query: 235 QAIVTGKGPLENLLDHLDDPVANNAWVYATKFVPG 269
           QAIVTGKGP+ENL DHL DPV NNAW YAT F PG
Sbjct: 751 QAIVTGKGPIENLADHLADPVNNNAWAYATNFAPG 855


>TC76506 homologue to GP|506629|gb|AAA50172.1|| photosystem II type I
           chlorophyll a/b-binding protein {Glycine max}, complete
          Length = 1057

 Score =  350 bits (897), Expect = 4e-97
 Identities = 184/275 (66%), Positives = 206/275 (74%), Gaps = 6/275 (2%)
 Frame = +1

Query: 1   MAATLMAATTASS-GTVIKPSP-----FLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYG 54
           MA + MA ++++  G  IK SP      +G+     +   ++V S            WYG
Sbjct: 61  MATSTMALSSSTMVGKAIKLSPSTPDLVMGRITMRKTTNKKNVPS---------GSPWYG 213

Query: 55  PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALG 114
           PDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALG
Sbjct: 214 PDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 393

Query: 115 CITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGL 174
           C+ PE+L +   V F E VWFKAGSQIFSEGGLDYLGNP+LVHAQSILA+   QV+LMG 
Sbjct: 394 CVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGA 570

Query: 175 VEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFV 234
           VEG+RI G P     + LYPGG  FDPLGLADDP  FAELKVKE+KNGRLAMFSMFGFFV
Sbjct: 571 VEGYRIAGGPLGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV 747

Query: 235 QAIVTGKGPLENLLDHLDDPVANNAWVYATKFVPG 269
           QAIVTGKGPLENL DH+ DPV NNAW +AT FVPG
Sbjct: 748 QAIVTGKGPLENLADHITDPVNNNAWAFATNFVPG 852


>TC82383 similar to GP|15430554|dbj|BAB64412. light-harvesting
           chlorophyll-a/b binding protein LhcII-1.3 {Chlamydomonas
           reinhardtii}, partial (62%)
          Length = 615

 Score =  234 bits (596), Expect = 3e-62
 Identities = 116/162 (71%), Positives = 133/162 (81%)
 Frame = +2

Query: 107 WAMLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLG 166
           WAMLGALGC+TPE+LEK+  V F E  WFKAG+QIF+  GL+YLGNP+LVHAQSI+A L 
Sbjct: 2   WAMLGALGCVTPELLEKYSGVKFGEATWFKAGAQIFNRDGLNYLGNPSLVHAQSIIATLA 181

Query: 167 FQVLLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAM 226
            QV+LMGL+EG+R+NG P  GEG +    G+ FDPLGLADDP TFAELKVKEIKNGRLAM
Sbjct: 182 SQVILMGLIEGYRVNGGPA-GEGLDPLHPGEAFDPLGLADDPDTFAELKVKEIKNGRLAM 358

Query: 227 FSMFGFFVQAIVTGKGPLENLLDHLDDPVANNAWVYATKFVP 268
           FSMFGFFVQAIVTGKGP+ NL DHL +P  NN +  ATKFVP
Sbjct: 359 FSMFGFFVQAIVTGKGPIANLNDHLANPSVNNGFASATKFVP 484


>BG456653 homologue to GP|3293555|gb| chlorophyll a/b binding protein
           {Medicago sativa}, partial (55%)
          Length = 511

 Score =  218 bits (554), Expect = 3e-57
 Identities = 112/149 (75%), Positives = 123/149 (82%)
 Frame = -1

Query: 103 IHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSIL 162
           IH RWAMLGALGC+ PE+L +   V F E VWFKAGSQIFSEGGLDYLGNP+LVHAQSIL
Sbjct: 511 IHSRWAMLGALGCVFPELLSR-NGVQFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSIL 335

Query: 163 AVLGFQVLLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNG 222
           A+   QV+LMG VEG+RI G P     + LYPGG  FDPLGLA+DP  FAELKVKE+KNG
Sbjct: 334 AIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKELKNG 158

Query: 223 RLAMFSMFGFFVQAIVTGKGPLENLLDHL 251
           RLAMFSMFGFFVQAIVTGKGP+ENL DHL
Sbjct: 157 RLAMFSMFGFFVQAIVTGKGPIENLADHL 71



 Score = 34.3 bits (77), Expect = 0.052
 Identities = 13/17 (76%), Positives = 13/17 (76%)
 Frame = +3

Query: 253 DPVANNAWVYATKFVPG 269
           DPV NNAW YAT F PG
Sbjct: 12  DPVNNNAWAYATNFAPG 62



 Score = 33.5 bits (75), Expect = 0.088
 Identities = 17/39 (43%), Positives = 24/39 (60%)
 Frame = -1

Query: 76  FPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALG 114
           +PG   +D  GL+ DPEAFA+ +  E+ +GR AM    G
Sbjct: 244 YPGG-SFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFG 131


>CA919263 similar to GP|12658406|gb light-harvesting complex II protein
           precursor {Chlamydomonas reinhardtii}, partial (57%)
          Length = 592

 Score =  216 bits (549), Expect = 1e-56
 Identities = 107/154 (69%), Positives = 121/154 (78%)
 Frame = -3

Query: 115 CITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGL 174
           C+TPE+L     V F E VWFKAG+QIF +GGL+YLGN NL+HAQSILA LGFQV++MGL
Sbjct: 584 CVTPELLAG-NGVSFGESVWFKAGAQIFKDGGLNYLGNENLIHAQSILATLGFQVVVMGL 408

Query: 175 VEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFV 234
            E +R NG   +     LYPGG  FDPLGLADDP T AELKVKE+KNGRLAMFSMFGFF+
Sbjct: 407 AEAYRANGADFIDAAEPLYPGGP-FDPLGLADDPDTLAELKVKELKNGRLAMFSMFGFFI 231

Query: 235 QAIVTGKGPLENLLDHLDDPVANNAWVYATKFVP 268
           QAIVTGKGP++NL DHL DP   NAW YATKF P
Sbjct: 230 QAIVTGKGPIQNLNDHLADPSVANAWAYATKFTP 129


>TC76645 similar to PIR|S16294|S16294 chlorophyll a/b-binding protein type I
           precursor - tomato, partial (89%)
          Length = 1071

 Score =  198 bits (503), Expect = 2e-51
 Identities = 124/277 (44%), Positives = 157/277 (55%), Gaps = 19/277 (6%)
 Frame = +3

Query: 1   MAATLMAATTASSGTVIKPSPFLGQTKG----SNSNTLRDVVSMGTGKYT---------- 46
           +AA+  AA+   S  +  P  F G T+     S  +T + V      K            
Sbjct: 90  IAASTAAASLGMSEMLGNPVKFSGATRSVPSSSTPSTFKTVALFSRKKAAPPPKQKVATP 269

Query: 47  MGNDL--WYGPDRVKYLGPF---SAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALE 101
              +L  WYGPDR  +L       ++ P YLTGE PGDYG+D  GLS  PE FAK +  E
Sbjct: 270 ASEELAKWYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQGYE 449

Query: 102 VIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSI 161
           +IH RWAMLGA G I PE   K+      E VWFK G+ +   G L+Y G P  +    I
Sbjct: 450 LIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP--IPINLI 623

Query: 162 LAVLGFQVLLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKN 221
           +AV+  +V+L+G  E +RI    G+   +  +PGG  FDPLGLA+DP   A LKVKEIKN
Sbjct: 624 VAVVA-EVVLLGGAEYYRITN--GLELEDKFHPGGP-FDPLGLANDPDQAAILKVKEIKN 791

Query: 222 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPVANN 258
           GRLAMF+M GFF+QA VTG+GP+ENL  HL DP  NN
Sbjct: 792 GRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 902


>BG456494 homologue to GP|2645999|gb| chlorophyll a/b binding protein of
           LHCII type I precursor {Panax ginseng}, partial (45%)
          Length = 535

 Score =  168 bits (425), Expect = 2e-42
 Identities = 88/123 (71%), Positives = 98/123 (79%)
 Frame = -1

Query: 103 IHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSIL 162
           IH RWAMLGALGC+ PE+L +   V F E VWFKAGSQIFSEGGLDYLGNP+LVHAQSIL
Sbjct: 535 IHSRWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSIL 359

Query: 163 AVLGFQVLLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNG 222
           A+   QV+LMG VEG+RI G P     + LYPGG  FDPLGLA+DP  FAELKVKE+KNG
Sbjct: 358 AIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKELKNG 182

Query: 223 RLA 225
           RLA
Sbjct: 181 RLA 173



 Score = 85.5 bits (210), Expect = 2e-17
 Identities = 38/54 (70%), Positives = 41/54 (75%)
 Frame = +3

Query: 42 TGKYTMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFA 95
          T K       WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSA+   F+
Sbjct: 33 TKKSVPSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSANLPFFS 194



 Score = 29.6 bits (65), Expect = 1.3
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = -1

Query: 76  FPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 108
           +PG   +D  GL+ DPEAFA+ +  E+ +GR A
Sbjct: 268 YPGG-SFDPLGLAEDPEAFAELKVKELKNGRLA 173


>TC90290 similar to SP|P22686|CB2_CHLMO Chlorophyll A-B binding protein of
           LHCII type I  chloroplast precursor (CAB) (LHCP).,
           partial (36%)
          Length = 651

 Score =  164 bits (415), Expect = 3e-41
 Identities = 76/112 (67%), Positives = 89/112 (78%), Gaps = 1/112 (0%)
 Frame = +2

Query: 52  WYGPDRVKYLGPFSAQ-TPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAML 110
           WYGPDR K+LGPFSA  TPSYL GE+PGDYGWD+AGLSADPE F + R +EVIH RWAML
Sbjct: 317 WYGPDRPKFLGPFSASYTPSYLNGEYPGDYGWDSAGLSADPETFERYRTIEVIHARWAML 496

Query: 111 GALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSIL 162
           GALGC+TPE+L K+  V+F EPVWFK G+ I   G + YLG+P L HA SI+
Sbjct: 497 GALGCLTPELLAKYQGVNFPEPVWFKTGAXILG-GSIXYLGSPXLXHAXSIV 649


>TC76509 homologue to PIR|S29904|S29904 chlorophyll a/b-binding protein -
           English ivy (fragment), partial (53%)
          Length = 481

 Score =  146 bits (369), Expect = 7e-36
 Identities = 75/102 (73%), Positives = 80/102 (77%)
 Frame = +3

Query: 168 QVLLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMF 227
           QV+LMG V   RI G P     + LYPGG  FDPLGLA+DP  FAELKVKE+KNGRLAMF
Sbjct: 9   QVILMGAVRVXRIXGGPLGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKELKNGRLAMF 185

Query: 228 SMFGFFVQAIVTGKGPLENLLDHLDDPVANNAWVYATKFVPG 269
           SMFGFFVQAIVTGKGP+ENL DHL DPV NNAW YAT F PG
Sbjct: 186 SMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFAPG 311



 Score = 33.5 bits (75), Expect = 0.088
 Identities = 17/39 (43%), Positives = 24/39 (60%)
 Frame = +3

Query: 76  FPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALG 114
           +PG   +D  GL+ DPEAFA+ +  E+ +GR AM    G
Sbjct: 84  YPGG-SFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFG 197


>TC76609 homologue to PIR|T06411|T06411 probable chlorophyll a/b-binding
           protein type III precursor - garden pea chloroplast,
           complete
          Length = 1500

 Score =  137 bits (346), Expect = 3e-33
 Identities = 90/217 (41%), Positives = 120/217 (54%), Gaps = 23/217 (10%)
 Frame = +2

Query: 65  SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FAKNRAL---EVIHGRWAMLGALGCITP 118
           S Q+ SYL G  PGD+G+D  GLS DPE    F + R L   E+I+GR+AMLGA G I P
Sbjct: 323 SKQSLSYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAP 499

Query: 119 EVLEKWVRVDFKEPV-WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGF---------- 167
           E+L K   +  +  + WF+ G  I   G  +Y  +   +     +A +GF          
Sbjct: 500 EILGKAGLIPAETALPWFQTGV-IPPAGTYNYWADNYTLFVME-MAFMGFAEHRRFQDWY 673

Query: 168 ------QVLLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKN 221
                 +   +GL +G         G G   YPGG  F+PLG   D  +  ELK+KE+KN
Sbjct: 674 NPGSMGKQYFLGLEKGLG-------GSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKN 832

Query: 222 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPVANN 258
           GRLAM ++ G+F+QA+VTG GP +NLLDHL DPV NN
Sbjct: 833 GRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 943


>TC92187 similar to GP|12658406|gb|AAK01125.1 light-harvesting complex II
           protein precursor {Chlamydomonas reinhardtii}, partial
           (37%)
          Length = 397

 Score =  134 bits (338), Expect = 3e-32
 Identities = 72/138 (52%), Positives = 87/138 (62%), Gaps = 1/138 (0%)
 Frame = +2

Query: 1   MAATLMAATTASSGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKY 60
           MA  L   + A    V +P      TKG+ ++T+    ++           WYGPDR K+
Sbjct: 35  MAFALATRSLAGKAAVARP------TKGAKASTVVPRAAVE----------WYGPDRAKW 166

Query: 61  LGPFS-AQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPE 119
           LGPFS    PSYLTGEFPGDYGWDTAGLSADP+ F + R LE+IH RWAMLGALGC+TPE
Sbjct: 167 LGPFSEGDVPSYLTGEFPGDYGWDTAGLSADPQTFQRYRELELIHARWAMLGALGCVTPE 346

Query: 120 VLEKWVRVDFKEPVWFKA 137
           +L     + F E VWFKA
Sbjct: 347 LL-AGNGIPFGESVWFKA 397


>TC85508 homologue to PIR|S60608|S60608 chlorophyll a/b-binding protein type
           II precursor  photosystem I - garden pea, complete
          Length = 1270

 Score =  127 bits (318), Expect = 6e-30
 Identities = 97/279 (34%), Positives = 137/279 (48%), Gaps = 11/279 (3%)
 Frame = +3

Query: 1   MAATLMAATTASSGTVIKPSP-FLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVK 59
           +AA  ++ ++  +G+ +  S  FLG+    NSN    V    T       +    PDR  
Sbjct: 162 IAAVAISPSSQKNGSPMGTSKAFLGRKLKVNSNIAAPVRVRSTTTVCAAAE----PDRPL 329

Query: 60  YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPE 119
           +     +  P +L G  PGD+G+D  GLS+DPE+   N   E++H RWAMLGA G   PE
Sbjct: 330 WFP--GSTPPPWLDGSLPGDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLGAAGIFIPE 503

Query: 120 VLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAV------LGFQVLLMG 173
            L K + +    P W+ AG Q       +Y  +   +    ++ +          +L  G
Sbjct: 504 FLTK-IGI-LNTPSWYTAGEQ-------EYFTDTTTLFIVELIFIGWAEGRRWADILNPG 656

Query: 174 LVEG---FRINGLPGVGEGNNLYPGGQYFDPLGL-ADDPATFAELKVKEIKNGRLAMFSM 229
            V     F  N L G   G   YPGG +FDPLG  +  P    EL+ KEIKNGRLAM ++
Sbjct: 657 CVNTDPIFPNNKLTGTDVG---YPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAV 827

Query: 230 FGFFVQAIVTGKGPLENLLDHLDDPVANNAWVYATKFVP 268
            G + Q I TG GP++NL  HL DP   +A ++A  F P
Sbjct: 828 MGAWFQHIYTGTGPIDNLFAHLADP--GHATIFAA-FTP 935


>TC79544 similar to PIR|F96510|F96510 light-harvesting complex protein
           [imported] - Arabidopsis thaliana, partial (82%)
          Length = 1076

 Score =  120 bits (302), Expect = 4e-28
 Identities = 77/202 (38%), Positives = 107/202 (52%), Gaps = 16/202 (7%)
 Frame = +1

Query: 69  PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVD 128
           P+YL G  PGD+G+D  GL  DPE+       E++H R+AMLG LG +  ++L   V   
Sbjct: 271 PTYLDGTLPGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVLGILVTDLLR--VAGV 444

Query: 129 FKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGVG- 187
              P+WF+AG+  +              +  +++ V   Q+LLMG  E  R       G 
Sbjct: 445 NSIPIWFEAGAVKYE-----------FANTGTLVVV---QLLLMGYAETRRYMDFVSPGS 582

Query: 188 ---EGNNL------------YPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGF 232
              EG+              YPGG   +PLGLA D  +  E K+KEIKNGRLAM ++ G 
Sbjct: 583 QAKEGSFFGLEASLGGLEPGYPGGPLLNPLGLAKDIKSAREWKLKEIKNGRLAMVAILGI 762

Query: 233 FVQAIVTGKGPLENLLDHLDDP 254
           FVQA VT  GP++NL++HL +P
Sbjct: 763 FVQASVTHVGPIDNLVEHLSNP 828


>TC76818 homologue to GP|13265501|gb|AAG40043.2 AT3g54890 {Arabidopsis
           thaliana}, partial (84%)
          Length = 1010

 Score =  119 bits (298), Expect = 1e-27
 Identities = 94/263 (35%), Positives = 118/263 (44%), Gaps = 5/263 (1%)
 Frame = +1

Query: 1   MAATLMAATTASSGTVIKPSPFLGQTKGSNSNTLRDVVSMGTG---KYTMGNDLWYGPDR 57
           +  T MA  T  S  +      L  +K   S +L    +  T    ++TM +D   G  R
Sbjct: 85  VCVTRMACNTLMSSAISAFPSLLSSSKSRFSTSLPLPCTASTNASSRFTMTSDWMPGQPR 264

Query: 58  VKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIT 117
                      PSYL G  PGD+G+D   L   PE   + +  E+IH RWAML   G + 
Sbjct: 265 -----------PSYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILV 411

Query: 118 PEVLEKWVRVDFKEPVWFKAGSQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVLLMGLVE 176
           PE L            W KA       GG   YLGNP  V   ++  +L  + L +  VE
Sbjct: 412 PEALGL--------GNWVKAQEWAALPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVE 561

Query: 177 GFRINGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFV-Q 235
             R             YPGG  FDPLG + DP  F E K+KE+KNGRLA+ +  G  V Q
Sbjct: 562 HQR---SMEKDPEKKKYPGGA-FDPLGYSKDPKKFHEYKIKEVKNGRLALLAFVGIVVQQ 729

Query: 236 AIVTGKGPLENLLDHLDDPVANN 258
               G GPLENL  HL DP  NN
Sbjct: 730 TAYPGTGPLENLATHLADPWHNN 798


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.319    0.139    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,274,245
Number of Sequences: 36976
Number of extensions: 89792
Number of successful extensions: 519
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of query: 270
length of database: 9,014,727
effective HSP length: 95
effective length of query: 175
effective length of database: 5,502,007
effective search space: 962851225
effective search space used: 962851225
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)