BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0588b.2
(157 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC85099 similar to GP|13194812|gb|AAK15568.1 putative hydroxymet... 33 0.062
TC76545 similar to GP|6119844|gb|AAF04253.1| short-chain alcohol... 32 0.11
TC89465 weakly similar to GP|8978074|dbj|BAA98102.1 protein seri... 29 0.90
TC79001 similar to GP|16649093|gb|AAL24398.1 proline iminopeptid... 28 2.0
BQ144302 similar to GP|6815109|dbj| hypothetical protein {Oryza ... 27 2.6
TC91940 SP|P50605|SDC_CAEEL Probable syndecan precursor. {Caenor... 27 2.6
BQ135871 27 3.4
TC77210 similar to GP|21954717|gb|AAM83095.1 SOS2-like protein k... 27 3.4
TC88767 weakly similar to PIR|T14319|T14319 protein AX110P - car... 27 3.4
TC78537 similar to GP|10178176|dbj|BAB11650. trehalose-6-phospha... 27 4.4
TC83823 weakly similar to GP|21593869|gb|AAM65836.1 polygalactur... 26 5.8
TC79394 weakly similar to PIR|T49019|T49019 probable RNA binding... 26 5.8
TC87588 similar to GP|8809587|dbj|BAA97138.1 gene_id:MNB8.4~unkn... 26 7.6
TC88473 similar to PIR|T50560|T50560 SINAH1 protein [imported] -... 26 7.6
BG449134 weakly similar to GP|4262245|gb| predicted by genscan a... 26 7.6
BQ144379 homologue to GP|1597741|gb|A unknown {Azospirillum bras... 26 7.6
TC76809 similar to GP|20334379|gb|AAM19210.1 GAI-like protein 1 ... 26 7.6
CA921013 similar to GP|12597461|gb p300/CBP acetyltransferase-re... 26 7.6
AL378348 26 7.6
TC93035 25 9.9
>TC85099 similar to GP|13194812|gb|AAK15568.1 putative
hydroxymethylglutaryl-CoA lyase {Arabidopsis thaliana},
partial (60%)
Length = 973
Score = 32.7 bits (73), Expect = 0.062
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +1
Query: 84 FSSTLFFCSFTWPDKTPSRHYFDVYDQDRDSCKFCSWKMSKTGGCMYEEKTGRHDICVPW 143
+SST + +FT D R + ++ C+ C+W+ G C+Y E T + C PW
Sbjct: 757 WSSTFKYSNFT-TDGDQYRGFICLWSWRLSICQGCNWECCH*GCCLYAEWTWS*N*CGPW 933
>TC76545 similar to GP|6119844|gb|AAF04253.1| short-chain alcohol
dehydrogenase SAD-C {Pisum sativum}, partial (95%)
Length = 980
Score = 32.0 bits (71), Expect = 0.11
Identities = 10/39 (25%), Positives = 20/39 (50%)
Frame = +3
Query: 112 RDSCKFCSWKMSKTGGCMYEEKTGRHDICVPWNNELNLH 150
RD C + + G C + + G+ C+ W ++++LH
Sbjct: 78 RDGTSLCRTRCTHGGDCRHPRRVGQSSGCIHWQSQVHLH 194
>TC89465 weakly similar to GP|8978074|dbj|BAA98102.1 protein
serine/threonine kinase-like {Arabidopsis thaliana},
partial (26%)
Length = 697
Score = 28.9 bits (63), Expect = 0.90
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 26 TFSIFPPKVTVEIINDLPQPPSTI 49
T S FPP +E +N LP+PPS I
Sbjct: 547 TGSPFPPTGLIEPLNTLPKPPSPI 476
>TC79001 similar to GP|16649093|gb|AAL24398.1 proline iminopeptidase
{Arabidopsis thaliana}, partial (78%)
Length = 1534
Score = 27.7 bits (60), Expect = 2.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 135 GRHDICVPWNNELNLHKRW 153
GR+D+C P + +LHK W
Sbjct: 997 GRYDVCCPMMSAWDLHKAW 1053
>BQ144302 similar to GP|6815109|dbj| hypothetical protein {Oryza sativa
(japonica cultivar-group)}, partial (3%)
Length = 1047
Score = 27.3 bits (59), Expect = 2.6
Identities = 24/89 (26%), Positives = 37/89 (40%), Gaps = 1/89 (1%)
Frame = +1
Query: 9 LLLFMTILFALRFDTGVTFSIFPPKVTVEIINDLPQPPSTIPLTFHCKSKDDDLGIHTLN 68
L+ F T+ F+ ++ + PP + I+ P PP P H S L +
Sbjct: 397 LIFFHTVCPCFSFNFIIS-PLLPPPTLLSHISPFPPPPFFSPPFHHFSSSPHFLPFFSF- 570
Query: 69 HGEVFSFHF-KPSIIRFSSTLFFCSFTWP 96
+ FHF P + FSS F F++P
Sbjct: 571 FPYLSPFHFPHPFLHLFSSYPFVSIFSYP 657
>TC91940 SP|P50605|SDC_CAEEL Probable syndecan precursor. {Caenorhabditis
elegans}, partial (5%)
Length = 168
Score = 27.3 bits (59), Expect = 2.6
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 6 MVSLLLFMTILFALRFDTGVTFSIFPPKVTVEIINDLPQPP 46
++ + +F+TI L+ F I +T+ II LPQPP
Sbjct: 37 IIFIFIFITIFTVLQ-----PFIILQTHITIFIITSLPQPP 144
>BQ135871
Length = 789
Score = 26.9 bits (58), Expect = 3.4
Identities = 22/70 (31%), Positives = 31/70 (43%)
Frame = +3
Query: 22 DTGVTFSIFPPKVTVEIINDLPQPPSTIPLTFHCKSKDDDLGIHTLNHGEVFSFHFKPSI 81
DT TF+I P +E + +LP + C+ + D LG H L+H F H
Sbjct: 576 DT*FTFAITPK---LEHLEELPSRVTLRRCYIKCQ*RIDLLGTHLLHHPS-FRIH----- 728
Query: 82 IRFSSTLFFC 91
+ LFFC
Sbjct: 729 -NLVNKLFFC 755
>TC77210 similar to GP|21954717|gb|AAM83095.1 SOS2-like protein kinase
{Glycine max}, partial (88%)
Length = 1831
Score = 26.9 bits (58), Expect = 3.4
Identities = 13/44 (29%), Positives = 20/44 (44%)
Frame = -2
Query: 33 KVTVEIINDLPQPPSTIPLTFHCKSKDDDLGIHTLNHGEVFSFH 76
+V + + L PPS +PL H + + H L H F +H
Sbjct: 1473 RVNIRCNSQLSFPPSFLPLKSHLRITTLHIKFHRLRHLFQFRYH 1342
>TC88767 weakly similar to PIR|T14319|T14319 protein AX110P - carrot,
partial (42%)
Length = 652
Score = 26.9 bits (58), Expect = 3.4
Identities = 12/45 (26%), Positives = 23/45 (50%)
Frame = -1
Query: 48 TIPLTFHCKSKDDDLGIHTLNHGEVFSFHFKPSIIRFSSTLFFCS 92
TI + FH + ++L ++H ++ F +++ S L FCS
Sbjct: 586 TI*IWFHSDAVFEELRTRIVSHATMYPFELTKTLLITQSLLHFCS 452
>TC78537 similar to GP|10178176|dbj|BAB11650. trehalose-6-phosphate
phosphatase {Arabidopsis thaliana}, partial (75%)
Length = 1609
Score = 26.6 bits (57), Expect = 4.4
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -1
Query: 62 LGIHTLNHGEVFSFHFKPSIIRFSSTLFFCSFTWP 96
L +H + HG FS K + F + F F WP
Sbjct: 781 LFVHLIYHGNKFSGRLKKYFLSFVIFVVFGLFCWP 677
>TC83823 weakly similar to GP|21593869|gb|AAM65836.1 polygalacturonase
inhibiting protein 1 {Arabidopsis thaliana}, partial
(38%)
Length = 798
Score = 26.2 bits (56), Expect = 5.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 7 VSLLLFMTILFALRFDTGVTFSIFPP 32
+SL+LF + L L F +TFS+ PP
Sbjct: 28 MSLILFPSFLLLLLFLPSLTFSLSPP 105
>TC79394 weakly similar to PIR|T49019|T49019 probable RNA binding protein -
Arabidopsis thaliana, partial (74%)
Length = 1909
Score = 26.2 bits (56), Expect = 5.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 35 TVEIINDLPQPPSTIPLT 52
T+ N P PPSTIP+T
Sbjct: 1318 TISCTNSNPYPPSTIPIT 1265
>TC87588 similar to GP|8809587|dbj|BAA97138.1 gene_id:MNB8.4~unknown protein
{Arabidopsis thaliana}, partial (61%)
Length = 1117
Score = 25.8 bits (55), Expect = 7.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 114 SCKFCSWKMSKTGGC 128
SC CSW+ S GGC
Sbjct: 519 SCHECSWRNSWVGGC 563
>TC88473 similar to PIR|T50560|T50560 SINAH1 protein [imported] - upland
cotton, partial (86%)
Length = 1360
Score = 25.8 bits (55), Expect = 7.6
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 63 GIHTLNHGEVFSFHFKPSIIRFSSTL 88
GIHT G SFH P + FSS L
Sbjct: 1198 GIHTPPSGFCCSFHILPVTLNFSSFL 1121
>BG449134 weakly similar to GP|4262245|gb| predicted by genscan and
genefinder {Arabidopsis thaliana}, partial (52%)
Length = 683
Score = 25.8 bits (55), Expect = 7.6
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 105 FDVYDQDRDSCKFCSWKMSKTGGCMYEEKTGRHDI 139
F Y Q R SC C W +S C +E+ G +I
Sbjct: 202 FCKYSQLRSSCTLCCWVLS-GNECFLKERRGFGEI 101
>BQ144379 homologue to GP|1597741|gb|A unknown {Azospirillum brasilense},
partial (5%)
Length = 1005
Score = 25.8 bits (55), Expect = 7.6
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 68 NHGEVFSFHFKPSIIRFSSTLFFCSFTWPDKTPSRHYFDVYDQD 111
+H F F F P R++ CS T P++TP R+Y V++ D
Sbjct: 415 SHYP*FLFLFPPCRARWNERA--CS-TNPNETPQRYYIIVFEPD 537
>TC76809 similar to GP|20334379|gb|AAM19210.1 GAI-like protein 1 {Vitis
vinifera}, partial (72%)
Length = 2764
Score = 25.8 bits (55), Expect = 7.6
Identities = 11/23 (47%), Positives = 15/23 (64%)
Frame = -1
Query: 68 NHGEVFSFHFKPSIIRFSSTLFF 90
+H F F F+PS+ FSS +FF
Sbjct: 1294 HHYRRFRFWFRPSLHSFSSCVFF 1226
>CA921013 similar to GP|12597461|gb p300/CBP acetyltransferase-related
protein 2 {Arabidopsis thaliana}, partial (1%)
Length = 780
Score = 25.8 bits (55), Expect = 7.6
Identities = 11/39 (28%), Positives = 15/39 (38%)
Frame = +3
Query: 81 IIRFSSTLFFCSFTWPDKTPSRHYFDVYDQDRDSCKFCS 119
+I + + F WP PS QD + FCS
Sbjct: 231 VITYCALYIFTKIHWPTIAPSLSKTSALQQDSECTDFCS 347
>AL378348
Length = 509
Score = 25.8 bits (55), Expect = 7.6
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -3
Query: 74 SFHFKPSIIRFSSTLFFCSFTW 95
SF K IIRFS F SF W
Sbjct: 456 SFKGKYKIIRFSRAFLFTSFLW 391
>TC93035
Length = 766
Score = 25.4 bits (54), Expect = 9.9
Identities = 16/52 (30%), Positives = 23/52 (43%), Gaps = 8/52 (15%)
Frame = -1
Query: 92 SFTWPDKT--------PSRHYFDVYDQDRDSCKFCSWKMSKTGGCMYEEKTG 135
++TW KT PS YF + + S +W+MSK GC + G
Sbjct: 358 TWTWTSKTGIRRACHCPSSAYFPLPVRYESSW---TWRMSKLNGCPHAASQG 212
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.327 0.141 0.474
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,222,488
Number of Sequences: 36976
Number of extensions: 137981
Number of successful extensions: 994
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of query: 157
length of database: 9,014,727
effective HSP length: 88
effective length of query: 69
effective length of database: 5,760,839
effective search space: 397497891
effective search space used: 397497891
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0588b.2