TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0587.6
         (1079 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC83766 similar to PIR|T52638|T52638 exportin 1 [validated] - Ar...   609  e-174
CB893792 similar to PIR|T52638|T5 exportin 1 [validated] - Arabi...   454  e-128
BG451648 similar to PIR|T52638|T5 exportin 1 [validated] - Arabi...   352  4e-97
BQ137998 GP|6165483|emb putative nuclear transport receptor {Sch...    45  2e-04
TC87962 similar to GP|14596039|gb|AAK68747.1 Unknown protein {Ar...    30  3.8
TC85858 homologue to PIR|S52630|S52630 nodulin ENOD40  early - g...    30  3.8
TC76630 homologue to GP|18033654|gb|AAL57201.1 putative nodule m...    30  3.8
BF643894                                                               30  5.0
TC89569 similar to PIR|H96576|H96576 hypothetical protein F22G10...    30  6.6
TC91420 similar to GP|19310639|gb|AAL85050.1 unknown protein {Ar...    30  6.6
TC88901 homologue to EGAD|18725|19116 protein II (pFLOB709) sign...    29  8.6
TC80023 similar to PIR|S71750|S71750 import intermediate-associa...    29  8.6

>TC83766 similar to PIR|T52638|T52638 exportin 1 [validated] - Arabidopsis
           thaliana, partial (30%)
          Length = 981

 Score =  609 bits (1570), Expect = e-174
 Identities = 300/326 (92%), Positives = 315/326 (96%)
 Frame = +2

Query: 432 AKPEEVLIIEDENGNIVRETLKDNDVLVQYKIMRETLIYLSHLDHDDTERQMLRKLSKQL 491
           AKPEEVLI+EDENGNIVRET+KD+DVLVQYKIMRETLIYLSHLDHDDTE+QML KLSKQL
Sbjct: 2   AKPEEVLIVEDENGNIVRETMKDSDVLVQYKIMRETLIYLSHLDHDDTEKQMLGKLSKQL 181

Query: 492 GGEDWTWNNLNTLCWAIGSISGSMMEDQENRFLVMVIRDLLNLCEFTKGKDNKAVIASNI 551
            G+DWTWNNLNTLCWAIGSISGSM E+QENRFLVMVIRDLLNLCE TKGKDNKAVIASNI
Sbjct: 182 SGKDWTWNNLNTLCWAIGSISGSMGEEQENRFLVMVIRDLLNLCEITKGKDNKAVIASNI 361

Query: 552 MYVVGQYPRFLRAHWKFLKTVVNKLFEFMHESHPGVQDMACDTFLKIVQKCKRKFVITQL 611
           MYVVGQYPRFLRAHWKFLKTVVNK FEFMHE+HPGVQDMACDTFLKIVQKC+RKFVITQ+
Sbjct: 362 MYVVGQYPRFLRAHWKFLKTVVNKWFEFMHETHPGVQDMACDTFLKIVQKCRRKFVITQV 541

Query: 612 GENEPFVSELLSGLSTTIVDLEPHQIHTFYESVGSMVQAESDSQKRDEYLQRLMHLPNQK 671
           GENEPFVSELLSGLSTTI DLEPHQIHTFYESVGSM+QAESDSQKRDEYLQRLM LPNQK
Sbjct: 542 GENEPFVSELLSGLSTTIADLEPHQIHTFYESVGSMIQAESDSQKRDEYLQRLMVLPNQK 721

Query: 672 WLEIIGQARQNVDFLKDHDVIRTVLNILQTNTSVASSLGTYFLPQISLIFLDMLNVYRMY 731
           W+EIIGQARQN DFLKD DVIRTVLN+LQTNTSVASSLGTYFLPQI+LIFLDMLNVYRMY
Sbjct: 722 WMEIIGQARQNADFLKDQDVIRTVLNVLQTNTSVASSLGTYFLPQITLIFLDMLNVYRMY 901

Query: 732 SELISKSIAEGGPYASRTSFVKLLRS 757
           SELISKSIAEG P+ SRTS+VKLLRS
Sbjct: 902 SELISKSIAEGTPFTSRTSYVKLLRS 979


>CB893792 similar to PIR|T52638|T5 exportin 1 [validated] - Arabidopsis
            thaliana, partial (22%)
          Length = 873

 Score =  454 bits (1168), Expect = e-128
 Identities = 225/239 (94%), Positives = 230/239 (96%)
 Frame = +3

Query: 841  ITKNFEDYPEHRLKFFSLLCAIATHCFHALICLSSQQLKFVMDSIIWAFRHTERNIAETG 900
            ITKNFEDYPEHRLKFFSLL AIATHCF ALICLSSQQLKFVMDSIIWAFRHTERNIAETG
Sbjct: 3    ITKNFEDYPEHRLKFFSLLRAIATHCFPALICLSSQQLKFVMDSIIWAFRHTERNIAETG 182

Query: 901  LNLLLEMLKKFQATEFCNQFYRTYFLTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLAE 960
            LNLLLEML KFQA+EFCNQFYRTYFLTIEQEIFAVLTDTFHKPGFKLHVLVLQHL CLAE
Sbjct: 183  LNLLLEMLNKFQASEFCNQFYRTYFLTIEQEIFAVLTDTFHKPGFKLHVLVLQHLLCLAE 362

Query: 961  TGALTEPLWDAATNPYPYPSNAAFVLEYTIKLLSTSFPNMTAAEVTQFVNGLFESTNDLS 1020
            +GALTEPLWDAATN YPYPSN AFV EYTIKLLSTSFPNMTAAEVTQFVNGLFESTNDLS
Sbjct: 363  SGALTEPLWDAATNSYPYPSNGAFVREYTIKLLSTSFPNMTAAEVTQFVNGLFESTNDLS 542

Query: 1021 TFKNHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSVPGLIAPSELQDEMLDS 1079
            TFK HIRDFL+QSKEFSAQDNKDLYAEEAAAQRERERQRMLS+PGLIAP ELQDEM+DS
Sbjct: 543  TFKTHIRDFLIQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPVELQDEMVDS 719


>BG451648 similar to PIR|T52638|T5 exportin 1 [validated] - Arabidopsis
           thaliana, partial (17%)
          Length = 634

 Score =  352 bits (903), Expect = 4e-97
 Identities = 177/211 (83%), Positives = 191/211 (89%)
 Frame = +3

Query: 232 IFESPLLETLLKFFPLPVYRNLTLKCLIEVAALQFGDYYDTQYTKMYNIFMVQLQTILLP 291
           IFESPLLETLLKFF +  YRNLTL+CL EVA+LQFG++YD QY KMYNIFMVQLQ+IL P
Sbjct: 3   IFESPLLETLLKFFTMQAYRNLTLQCLTEVASLQFGNFYDAQYVKMYNIFMVQLQSILPP 182

Query: 292 TTNIPEAYAQGSSEEQTFIQNLALFFTSFYKVHIRILESTQENIAALLSGLEYLINISYV 351
           TTNIPEAYA GSS+EQ FIQNLALFFT F+KVHIRILESTQENI+ALL GLEYLINISYV
Sbjct: 183 TTNIPEAYAHGSSDEQAFIQNLALFFTLFFKVHIRILESTQENISALLLGLEYLINISYV 362

Query: 352 DDTEVFKVCLDYWNILVSELFEPHRSLENPAAAATNMLGNQQAPLMPPGMVDGLGSQLLQ 411
           DDTEVFKVCLDYWN LVSELF+PHRSLEN AAAATNM+G+ Q  LMPPGMVDGLG QLLQ
Sbjct: 363 DDTEVFKVCLDYWNTLVSELFQPHRSLENSAAAATNMMGS-QVSLMPPGMVDGLGPQLLQ 539

Query: 412 RRQLYAGPMSKLRTLMICRMAKPEEVLIIED 442
           RRQLYAGP+SKL  LMICRMAKP EVLI+ED
Sbjct: 540 RRQLYAGPVSKLXMLMICRMAKPXEVLIVED 632


>BQ137998 GP|6165483|emb putative nuclear transport receptor
           {Schizosaccharomyces pombe}, partial (11%)
          Length = 656

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 43/212 (20%), Positives = 89/212 (41%), Gaps = 6/212 (2%)
 Frame = +3

Query: 37  ADQILRDLQNNPDMWLQVMHILQNTQ-NLNTKFFALQVLEGVIKYRWNALPLEQRDGMKN 95
           A + L   Q + + W   + +L+++  +   K FA   L+G I Y  + +P EQ   ++ 
Sbjct: 6   AHEFLEKFQKSQEAWTTTLAMLESSSVDAAAKLFAATTLKGKIVYDLHQIPREQLPELRA 185

Query: 96  FISDIIVQLSGNEASFRMERLYVNKLNIILVQILKHEWPLRWRSFIPDLVSAAKTSETIC 155
            I   +          R+  L V   N+ +           W+  + D+V A  +     
Sbjct: 186 SIMRNLTVFHAGPKPIRLT-LCVCLANLAIQMT-------EWKDVLTDIVHALGSDPATL 341

Query: 156 ENCMAILKLLSEEV-----FDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRA 210
              +  L++L EEV        +  E+T + ++ ++ +     +L+        +A++  
Sbjct: 342 PCVLDFLRVLPEEVTHGRKIALTEHELTMRTVELIEDNAEQALKLLVTYATSSPAAARNP 521

Query: 211 ELIRATLSTLHAFLSWIPLGYIFESPLLETLL 242
           +L    L+ + +++  IPL  I  SPLL  ++
Sbjct: 522 QL----LNCITSWMREIPLDSILNSPLLAVII 605


>TC87962 similar to GP|14596039|gb|AAK68747.1 Unknown protein {Arabidopsis
           thaliana}, partial (90%)
          Length = 1268

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 14/38 (36%), Positives = 24/38 (62%)
 Frame = -1

Query: 848 YPEHRLKFFSLLCAIATHCFHALICLSSQQLKFVMDSI 885
           +P  R+KF +LL  +  HC  +LIC+S++    +M +I
Sbjct: 899 FPRDRIKFTNLLKMVKNHC--SLICMSTRSNDRIMKNI 792


>TC85858 homologue to PIR|S52630|S52630 nodulin ENOD40  early - garden pea,
           partial (53%)
          Length = 755

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 18/74 (24%), Positives = 32/74 (42%)
 Frame = -1

Query: 288 ILLPTTNIPEAYAQGSSEEQTFIQNLALFFTSFYKVHIRILESTQENIAALLSGLEYLIN 347
           I++      +AY     E  T  +   L  T  Y  H++ L+  Q  ++  LS L+Y+I 
Sbjct: 725 IIITLNTNKQAYIHVEKENNTEEKEHELMITVTYLTHLQKLKQEQTLVSCKLSELKYIIK 546

Query: 348 ISYVDDTEVFKVCL 361
           ++         +CL
Sbjct: 545 LAISQRKTTPSLCL 504


>TC76630 homologue to GP|18033654|gb|AAL57201.1 putative nodule membrane
            protein {Medicago sativa}, complete
          Length = 2605

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 25/95 (26%), Positives = 43/95 (44%), Gaps = 10/95 (10%)
 Frame = -1

Query: 897  AETGLNLLLEMLKKFQATEFCNQFYRTYFLTIEQ--------EIFAVLTDTFHKPGFKLH 948
            A+TGLNLL      F  ++ CN  + ++F  +E+         I ++  +  + P   +H
Sbjct: 1657 AQTGLNLLYHSPHAFTHSKLCNFPWNSHFFMMEE*NFTCS*LTIISL*FNCSNAPARVIH 1478

Query: 949  VLVLQHLFCLAETGALTEPLWDAATNP--YPYPSN 981
            +   +  F L+       PL DA   P  +PY S+
Sbjct: 1477 IYTSR--FFLSWD*RTIYPLCDAVVGPPTFPYSSS 1379


>BF643894 
          Length = 591

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
 Frame = +2

Query: 177 MTQQKIKELKQSLNSEFQLIHELCLYVLS------ASQRAELIRATLSTLHA 222
           +TQQ   E K      FQ++HELC++ LS        Q  + ++ + +TLH+
Sbjct: 128 ITQQSFSEQKLMF---FQILHELCVFFLSQICSYITQQSNQKVQPSCNTLHS 274


>TC89569 similar to PIR|H96576|H96576 hypothetical protein F22G10.17
           [imported] - Arabidopsis thaliana, partial (60%)
          Length = 834

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +2

Query: 239 ETLLKFFPLPVYRNL--TLKCLIEVAALQFGDYYDTQYTKMYNIFMVQLQTILLPTTNIP 296
           + L KFFP+P +RNL     C   V  L      + Q   +       LQ +L PTT  P
Sbjct: 56  QLLHKFFPIPKFRNLIPNFCCGHHVCIL------NPQQNFLLQFGQWALQLLLTPTTQTP 217

Query: 297 EAYAQ 301
           + + Q
Sbjct: 218 QKFNQ 232


>TC91420 similar to GP|19310639|gb|AAL85050.1 unknown protein {Arabidopsis
           thaliana}, partial (71%)
          Length = 678

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 1/138 (0%)
 Frame = +3

Query: 111 FRMERLYVNKLNIILVQILKHEWPLRWRSFIPDLVSAAKTSETICENCMAILKLLSEEVF 170
           F +    VN +  +L  + K  + +R + F   L+   +    +  +   +L L   E++
Sbjct: 114 FHLMNFLVNGVRAVLFGLYKSVFAIRPKVFEQVLM---EVPGLLFFSTYTLLVLFWAEIY 284

Query: 171 DFSRGEMTQQKIKELKQSLNSEFQLIHELCLYV-LSASQRAELIRATLSTLHAFLSWIPL 229
             +R E  Q K++    S+N    LI ++C+++ ++AS+    I A    L        L
Sbjct: 285 HQARSEPAQ-KLRPAYFSINGVVYLI-QICIWIYMTASKTVAGIEAAKLFLAVISFCAAL 458

Query: 230 GYIFESPLLETLLKFFPL 247
           G++     L  LL+ FP+
Sbjct: 459 GFLLYGGRLFFLLRRFPI 512


>TC88901 homologue to EGAD|18725|19116 protein II (pFLOB709) signal peptide
           {Neisseria gonorrhoeae}, partial (44%)
          Length = 713

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 855 FFSLLCAIATHCFHALICLSSQQL 878
           F SLL    +HC+H L+CL S  L
Sbjct: 571 FSSLLFCSLSHCYHPLLCLLSSSL 642


>TC80023 similar to PIR|S71750|S71750 import intermediate-associated 100K
           protein precursor - garden pea, partial (29%)
          Length = 1052

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 25/101 (24%), Positives = 46/101 (44%), Gaps = 2/101 (1%)
 Frame = -3

Query: 199 LCLYVLSASQRA-ELIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFPLPVY-RNLTLK 256
           +C    S S R  E ++ T+ +  + L  +P  +             + L +Y  NL+ K
Sbjct: 816 ICTPAASGSSRPKEFLKVTILSTSSPLELLPTRWNHRK---------YKLGIYITNLSFK 664

Query: 257 CLIEVAALQFGDYYDTQYTKMYNIFMVQLQTILLPTTNIPE 297
           CLI +        +    +  +NIF++QL +I+ P+  IP+
Sbjct: 663 CLILLT-------HXILISNNFNIFLLQLGSIIKPSNIIPQ 562


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.322    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,786,330
Number of Sequences: 36976
Number of extensions: 428189
Number of successful extensions: 2301
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 2272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2298
length of query: 1079
length of database: 9,014,727
effective HSP length: 106
effective length of query: 973
effective length of database: 5,095,271
effective search space: 4957698683
effective search space used: 4957698683
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)