TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0587.1
         (134 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC92181 similar to GP|14517476|gb|AAK62628.1 At2g43320/T1O24.6 {...    28  1.4
TC87843 weakly similar to GP|3420801|gb|AAC31939.1| IAA-amino ac...    25  9.1

>TC92181 similar to GP|14517476|gb|AAK62628.1 At2g43320/T1O24.6 {Arabidopsis
           thaliana}, partial (50%)
          Length = 1114

 Score = 27.7 bits (60), Expect = 1.4
 Identities = 9/32 (28%), Positives = 22/32 (68%)
 Frame = -2

Query: 82  PELIFVPRDFKKHM*ISRSIYLLLSVLQRYDP 113
           P +  +P+DFKK + + +++++ L +L + +P
Sbjct: 180 PIVFILPKDFKKFLFLQQNLFVSLQILPKKNP 85


>TC87843 weakly similar to GP|3420801|gb|AAC31939.1| IAA-amino acid
           hydrolase homolog ILL3 {Arabidopsis thaliana}, partial
           (65%)
          Length = 1339

 Score = 25.0 bits (53), Expect = 9.1
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -2

Query: 26  AEMDVFYAAVETLSNPTFNGKAMAVGSMSMISTSSHKARKFGVRSAIPKFI 76
           + + + +A +E L +P  +       SMS++STS H A  F +   + KF+
Sbjct: 432 SSLKLIFALIEQLCSP**HS------SMSIMSTSMHSAINFALVFPLNKFL 298


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.333    0.142    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,807,033
Number of Sequences: 36976
Number of extensions: 42279
Number of successful extensions: 236
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of query: 134
length of database: 9,014,727
effective HSP length: 86
effective length of query: 48
effective length of database: 5,834,791
effective search space: 280069968
effective search space used: 280069968
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 53 (25.0 bits)