BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0544.2
(141 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC87215 homologue to SP|O65759|H2A_CICAR Histone H2A. [Chickpea ... 258 6e-70
TC87216 homologue to SP|O65759|H2A_CICAR Histone H2A. [Chickpea ... 258 6e-70
TC88041 homologue to SP|O65759|H2A_CICAR Histone H2A. [Chickpea ... 255 5e-69
TC78618 similar to GP|15724172|gb|AAL06478.1 At1g54690/T22H22_12... 225 4e-60
TC86148 homologue to PIR|T05747|T05747 histone H2A.M4I22.40 - Ar... 202 4e-53
TC86147 GP|9758956|dbj|BAB09343.1 histone H2A {Arabidopsis thali... 201 8e-53
TC79433 homologue to PIR|A27332|A27332 histone H2A - Emericella ... 190 1e-49
AA660391 similar to SP|O65759|H2A_ Histone H2A. [Chickpea Garba... 184 7e-49
TC83516 similar to PIR|C27399|HSZPA3 histone H2A.2 - fission yea... 186 4e-48
TC80358 similar to SP|P40281|H2A2_PEA Histone H2A. [Garden pea] ... 180 2e-46
TC84965 homologue to GP|7649159|gb|AAF65769.1| histone H2A {Euph... 179 4e-46
TC86385 similar to SP|P25469|H2A_LYCES Histone H2A. [Tomato] {Ly... 177 1e-45
TC85986 homologue to SP|P19177|H2A_PETCR Histone H2A. [Parsley ... 177 1e-45
TC86387 homologue to SP|P25470|H2A1_PEA Histone H2A. [Garden pea... 176 4e-45
TC82748 similar to GP|17644129|gb|AAL38970.1 histone H2A {Neuros... 166 3e-42
BG648587 similar to SP|P25469|H2A_ Histone H2A. [Tomato] {Lycope... 159 5e-40
BG450812 similar to PIR|D96568|D96 probable histone H2A 14481-1... 130 2e-31
TC85318 similar to PIR|D96568|D96568 probable histone H2A 14481... 123 2e-29
TC78143 homologue to PIR|T47615|T47615 histone H2A.F/Z - Arabido... 123 2e-29
TC85324 homologue to GP|22773254|gb|AAN06860.1 Putative histone ... 96 4e-21
>TC87215 homologue to SP|O65759|H2A_CICAR Histone H2A. [Chickpea Garbanzo]
{Cicer arietinum}, complete
Length = 723
Score = 258 bits (659), Expect = 6e-70
Identities = 135/141 (95%), Positives = 136/141 (95%)
Frame = +3
Query: 1 MSSTGGNNTKGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 60
MSSTG TKGGRGKPKAAKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA
Sbjct: 78 MSSTG--TTKGGRGKPKAAKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 251
Query: 61 VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 120
VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG+VTIANGGVLPNIHQ
Sbjct: 252 VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQ 431
Query: 121 TLLPKKAGKGKGEIGSASQEF 141
TLLPKK GKGKGEIGSASQEF
Sbjct: 432 TLLPKKVGKGKGEIGSASQEF 494
>TC87216 homologue to SP|O65759|H2A_CICAR Histone H2A. [Chickpea Garbanzo]
{Cicer arietinum}, complete
Length = 628
Score = 258 bits (659), Expect = 6e-70
Identities = 135/141 (95%), Positives = 136/141 (95%)
Frame = +2
Query: 1 MSSTGGNNTKGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 60
MSSTG TKGGRGKPKAAKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA
Sbjct: 89 MSSTG--TTKGGRGKPKAAKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 262
Query: 61 VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 120
VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG+VTIANGGVLPNIHQ
Sbjct: 263 VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQ 442
Query: 121 TLLPKKAGKGKGEIGSASQEF 141
TLLPKK GKGKGEIGSASQEF
Sbjct: 443 TLLPKKVGKGKGEIGSASQEF 505
>TC88041 homologue to SP|O65759|H2A_CICAR Histone H2A. [Chickpea Garbanzo]
{Cicer arietinum}, partial (97%)
Length = 586
Score = 255 bits (651), Expect = 5e-69
Identities = 133/142 (93%), Positives = 135/142 (94%), Gaps = 1/142 (0%)
Frame = +1
Query: 1 MSSTGGNNT-KGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 59
MSS G T KGGRGKPKA+KSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS
Sbjct: 61 MSSKGATTTTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 240
Query: 60 AVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 119
AVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG+VTIANGGVLPNIH
Sbjct: 241 AVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIH 420
Query: 120 QTLLPKKAGKGKGEIGSASQEF 141
QTLLPKK GKGKGEIGSASQEF
Sbjct: 421 QTLLPKKVGKGKGEIGSASQEF 486
>TC78618 similar to GP|15724172|gb|AAL06478.1 At1g54690/T22H22_12
{Arabidopsis thaliana}, complete
Length = 963
Score = 225 bits (574), Expect = 4e-60
Identities = 115/140 (82%), Positives = 121/140 (86%)
Frame = +3
Query: 2 SSTGGNNTKGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 61
S KGGRGKP KSVSRS KAGLQFPVGRIARFLKAG+Y++RVG+G+PVYLSAV
Sbjct: 51 SDATATTKKGGRGKPITTKSVSRSSKAGLQFPVGRIARFLKAGRYSQRVGSGSPVYLSAV 230
Query: 62 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 121
LEYL AEVLELAGNAARDNKK RIVPRH+QLAVRNDEELSKLLG VTIANGGVLPNIHQT
Sbjct: 231 LEYLCAEVLELAGNAARDNKKTRIVPRHLQLAVRNDEELSKLLGHVTIANGGVLPNIHQT 410
Query: 122 LLPKKAGKGKGEIGSASQEF 141
LLPKK KGEIGS SQEF
Sbjct: 411 LLPKKVAGKKGEIGSVSQEF 470
>TC86148 homologue to PIR|T05747|T05747 histone H2A.M4I22.40 - Arabidopsis
thaliana, partial (96%)
Length = 696
Score = 202 bits (514), Expect = 4e-53
Identities = 107/130 (82%), Positives = 110/130 (84%)
Frame = +2
Query: 2 SSTGGNNTKGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 61
SS G G PK K+ SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AV
Sbjct: 83 SSMAGRGKSLGSSAPK--KATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAV 256
Query: 62 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 121
LEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH
Sbjct: 257 LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNL 436
Query: 122 LLPKKAGKGK 131
LLPKKAG K
Sbjct: 437 LLPKKAGPSK 466
>TC86147 GP|9758956|dbj|BAB09343.1 histone H2A {Arabidopsis thaliana},
partial (94%)
Length = 678
Score = 201 bits (511), Expect = 8e-53
Identities = 106/130 (81%), Positives = 113/130 (86%), Gaps = 4/130 (3%)
Frame = +1
Query: 3 STGGNNTKGGRGKP----KAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYL 58
S+ +++ GRGK A K+ SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL
Sbjct: 79 SSSISSSMAGRGKTLGSGSAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYL 258
Query: 59 SAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNI 118
+AVLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNI
Sbjct: 259 AAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNI 438
Query: 119 HQTLLPKKAG 128
H LLPKKAG
Sbjct: 439 HNLLLPKKAG 468
>TC79433 homologue to PIR|A27332|A27332 histone H2A - Emericella nidulans,
partial (84%)
Length = 833
Score = 190 bits (483), Expect = 1e-49
Identities = 97/133 (72%), Positives = 107/133 (79%)
Frame = +1
Query: 1 MSSTGGNNTKGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 60
MSS G + K S SRS KAGLQFPVGRI R L+ G YA+RVGAGAPVYL+A
Sbjct: 103 MSSGGKSGGKAAAAATSKLSSSSRSAKAGLQFPVGRIHRLLRKGNYAQRVGAGAPVYLAA 282
Query: 61 VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 120
VLEYLAAE+LELAGNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ
Sbjct: 283 VLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQ 462
Query: 121 TLLPKKAGKGKGE 133
LLPKK KG GE
Sbjct: 463 NLLPKKGKKGTGE 501
>AA660391 similar to SP|O65759|H2A_ Histone H2A. [Chickpea Garbanzo] {Cicer
arietinum}, partial (85%)
Length = 607
Score = 184 bits (467), Expect(2) = 7e-49
Identities = 101/126 (80%), Positives = 103/126 (81%)
Frame = +1
Query: 1 MSSTGGNNTKGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 60
MSSTG TKGGRGKPKAAKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA
Sbjct: 55 MSSTG--TTKGGRGKPKAAKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 228
Query: 61 VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 120
VL YLAAEVLELAGNAARDN K RIVPR + LL +VTIANGGVLP IH
Sbjct: 229 VLXYLAAEVLELAGNAARDNXKKRIVPRAHSACCLKR*XIXXLLXTVTIANGGVLPXIHH 408
Query: 121 TLLPKK 126
TLLPKK
Sbjct: 409 TLLPKK 426
Score = 25.4 bits (54), Expect(2) = 7e-49
Identities = 11/17 (64%), Positives = 13/17 (75%)
Frame = +3
Query: 125 KKAGKGKGEIGSASQEF 141
K+ GKGK +IGSAS F
Sbjct: 423 KRLGKGKXKIGSASPXF 473
>TC83516 similar to PIR|C27399|HSZPA3 histone H2A.2 - fission yeast
(Schizosaccharomyces pombe), partial (94%)
Length = 699
Score = 186 bits (471), Expect = 4e-48
Identities = 97/130 (74%), Positives = 110/130 (84%), Gaps = 2/130 (1%)
Frame = +3
Query: 3 STGGNNTKGGRGKPKAAK--SVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 60
S+GG + GG+ AA S SRS KAGLQFPVGRI R L+ G YA+RVGAGAPVYL+A
Sbjct: 129 SSGGKS--GGKSAAAAASKASSSRSAKAGLQFPVGRIHRLLRKGNYAQRVGAGAPVYLAA 302
Query: 61 VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 120
VLEYLAAE+LELAGNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ
Sbjct: 303 VLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQ 482
Query: 121 TLLPKKAGKG 130
LLPKK+ KG
Sbjct: 483 NLLPKKSKKG 512
>TC80358 similar to SP|P40281|H2A2_PEA Histone H2A. [Garden pea] {Pisum
sativum}, complete
Length = 715
Score = 180 bits (456), Expect = 2e-46
Identities = 95/138 (68%), Positives = 107/138 (76%)
Frame = +2
Query: 2 SSTGGNNTKGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 61
+ST GGR KSV+RS +AGLQFPVGRI R+LK G+YA+RVG GAPVYL+AV
Sbjct: 71 ASTKTKKGAGGRKGGPRKKSVTRSTRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAV 250
Query: 62 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 121
LEYLAAEVLELAGNAARDNKKNRI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+
Sbjct: 251 LEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPI 430
Query: 122 LLPKKAGKGKGEIGSASQ 139
LLPKK K S S+
Sbjct: 431 LLPKKNEKAATTTKSPSK 484
>TC84965 homologue to GP|7649159|gb|AAF65769.1| histone H2A {Euphorbia
esula}, partial (91%)
Length = 578
Score = 179 bits (453), Expect = 4e-46
Identities = 93/129 (72%), Positives = 106/129 (82%)
Frame = +3
Query: 11 GGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVL 70
G +G KSV+RS +AGLQFPVGRI R+LK G+YA+RVG GAPVYL+AVLEYLAAEVL
Sbjct: 30 GRKGGGPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVL 209
Query: 71 ELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKAGKG 130
ELAGNAARDNKKNRI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+ LLPKK+ K
Sbjct: 210 ELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSEKP 389
Query: 131 KGEIGSASQ 139
E S S+
Sbjct: 390 VKEPKSPSK 416
>TC86385 similar to SP|P25469|H2A_LYCES Histone H2A. [Tomato] {Lycopersicon
esculentum}, partial (95%)
Length = 679
Score = 177 bits (449), Expect = 1e-45
Identities = 90/119 (75%), Positives = 101/119 (84%)
Frame = +2
Query: 11 GGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVL 70
G +G KSV+RS +AGLQFPVGRI R+LK G+YA+RVG GAPVYL+AVLEYLAAEVL
Sbjct: 98 GRKGGGPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVL 277
Query: 71 ELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKAGK 129
ELAGNAARDNKKNRI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+ LLPKK K
Sbjct: 278 ELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLNGVTIAHGGVLPNINPILLPKKTEK 454
>TC85986 homologue to SP|P19177|H2A_PETCR Histone H2A. [Parsley
Petroselinum hortense] {Petroselinum crispum}, partial
(92%)
Length = 747
Score = 177 bits (449), Expect = 1e-45
Identities = 94/127 (74%), Positives = 106/127 (83%), Gaps = 2/127 (1%)
Frame = +2
Query: 2 SSTGGNNTKGGR--GKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 59
+ST GGR G P+ KSV+RS +AGLQFPVGRI R+LK G+YA+RVG GAPVYL+
Sbjct: 110 ASTKTKKGAGGRKGGGPRK-KSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLA 286
Query: 60 AVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 119
AVLEYLAAEVLELAGNAARDNKKNRI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+
Sbjct: 287 AVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNIN 466
Query: 120 QTLLPKK 126
LLPKK
Sbjct: 467 PVLLPKK 487
>TC86387 homologue to SP|P25470|H2A1_PEA Histone H2A. [Garden pea] {Pisum
sativum}, partial (94%)
Length = 661
Score = 176 bits (445), Expect = 4e-45
Identities = 89/116 (76%), Positives = 100/116 (85%)
Frame = +2
Query: 11 GGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVL 70
G +G KSV+RS +AGLQFPVGRI R+LK G+YA+RVG GAPVYL+AVLEYLAAEVL
Sbjct: 113 GRKGGGPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVL 292
Query: 71 ELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 126
ELAGNAARDNKKNRI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+ LLPKK
Sbjct: 293 ELAGNAARDNKKNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKK 460
>TC82748 similar to GP|17644129|gb|AAL38970.1 histone H2A {Neurospora
crassa}, partial (77%)
Length = 740
Score = 166 bits (420), Expect = 3e-42
Identities = 87/130 (66%), Positives = 101/130 (76%), Gaps = 3/130 (2%)
Frame = +2
Query: 5 GGNNTKGGRGKPKAA---KSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 61
GG R KA + V++S KAGL FPVGR++R LK G+YA+R+GAGAPVYL+AV
Sbjct: 176 GGKTKTKXRXGAKAITTPQKVTKSVKAGLTFPVGRMSRLLKKGRYADRIGAGAPVYLAAV 355
Query: 62 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 121
LEYL AEVLELAGNAARDNKK RI+PRH+QLA+RNDEEL+ LL V IA GGVLPNIH
Sbjct: 356 LEYLTAEVLELAGNAARDNKKQRIIPRHLQLAIRNDEELNILLRHVHIAEGGVLPNIHVE 535
Query: 122 LLPKKAGKGK 131
LLPKK G+ K
Sbjct: 536 LLPKKKGEKK 565
>BG648587 similar to SP|P25469|H2A_ Histone H2A. [Tomato] {Lycopersicon
esculentum}, partial (87%)
Length = 698
Score = 159 bits (401), Expect = 5e-40
Identities = 90/158 (56%), Positives = 104/158 (64%), Gaps = 33/158 (20%)
Frame = +1
Query: 2 SSTGGNNTKGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 61
++ G KGG K K+VS+S KAGLQFPVGRIARF+K G+Y++RVG GAP+YL+AV
Sbjct: 40 TTKGAGGRKGGERK----KAVSKSSKAGLQFPVGRIARFMKKGRYSQRVGTGAPIYLAAV 207
Query: 62 LEYLAAEV---------------------------------LELAGNAARDNKKNRIVPR 88
LEYLAAEV LELAGNAARDNKKNRI PR
Sbjct: 208 LEYLAAEVFSVYFKAKFIINRFL*LINVN*VIVLECDVM*VLELAGNAARDNKKNRINPR 387
Query: 89 HIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 126
H+ LAVRND+EL KLL VTIA+GGVLPNI+ LLPKK
Sbjct: 388 HVCLAVRNDDELGKLLQGVTIASGGVLPNINPVLLPKK 501
>BG450812 similar to PIR|D96568|D96 probable histone H2A 14481-15293
[imported] - Arabidopsis thaliana, partial (88%)
Length = 652
Score = 130 bits (326), Expect = 2e-31
Identities = 74/131 (56%), Positives = 91/131 (68%), Gaps = 2/131 (1%)
Frame = +3
Query: 1 MSSTGGNNTKGGRGKP-KAAKSVSRSQKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYL 58
+S G T G +GK K VSRS +AGLQFPVGRI R LK A RVGA + VY
Sbjct: 39 LSGKGAKGTMGDKGKAGDKKKPVSRSARAGLQFPVGRIHRLLKGRVSANGRVGATSAVYS 218
Query: 59 SAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNI 118
+A+LEYL AEVLELAGNA++D K RI PRH+QLA+R DEEL L+ TIA GGV+P+I
Sbjct: 219 AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KATIAGGGVIPHI 395
Query: 119 HQTLLPKKAGK 129
H++L+ K+ K
Sbjct: 396 HKSLINKQNKK 428
>TC85318 similar to PIR|D96568|D96568 probable histone H2A 14481-15293
[imported] - Arabidopsis thaliana, complete
Length = 778
Score = 123 bits (309), Expect = 2e-29
Identities = 67/109 (61%), Positives = 82/109 (74%), Gaps = 1/109 (0%)
Frame = +2
Query: 20 KSVSRSQKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAAR 78
K SRS +AGLQFPVGRI R LK+ A RVGA A VY +A+LEYL AEVLELAGNA++
Sbjct: 149 KPTSRSSRAGLQFPVGRIHRLLKSRTMAHGRVGATAAVYSAAILEYLTAEVLELAGNASK 328
Query: 79 DNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKA 127
D K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH++L+ K +
Sbjct: 329 DLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 472
>TC78143 homologue to PIR|T47615|T47615 histone H2A.F/Z - Arabidopsis
thaliana, partial (98%)
Length = 723
Score = 123 bits (309), Expect = 2e-29
Identities = 74/130 (56%), Positives = 90/130 (68%), Gaps = 12/130 (9%)
Frame = +2
Query: 10 KGGRG----KPKAA-------KSVSRSQKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVY 57
KGG+G K AA K SRS +AG+QFPVGRI R LK A RVGA A VY
Sbjct: 92 KGGKGLVAAKTTAANKDKDKKKPTSRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVY 271
Query: 58 LSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPN 117
L+++LEYL AEVLELAGNA++D K RI PRH+QLA+R DEEL L+ TIA GGV+P+
Sbjct: 272 LASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPH 448
Query: 118 IHQTLLPKKA 127
IH++L+ K A
Sbjct: 449 IHKSLINKTA 478
>TC85324 homologue to GP|22773254|gb|AAN06860.1 Putative histone H2A {Oryza
sativa (japonica cultivar-group)}, partial (64%)
Length = 710
Score = 96.3 bits (238), Expect = 4e-21
Identities = 49/79 (62%), Positives = 62/79 (78%)
Frame = +2
Query: 49 RVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVT 108
RVGA A VY +A+LEYL AEVLELAGNA++D K RI PRH+QLA+R DEEL L+ T
Sbjct: 155 RVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-T 331
Query: 109 IANGGVLPNIHQTLLPKKA 127
IA GGV+P+IH++L+ K +
Sbjct: 332 IAGGGVIPHIHKSLINKSS 388
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.312 0.132 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,888,932
Number of Sequences: 36976
Number of extensions: 28099
Number of successful extensions: 136
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of query: 141
length of database: 9,014,727
effective HSP length: 86
effective length of query: 55
effective length of database: 5,834,791
effective search space: 320913505
effective search space used: 320913505
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)
Lotus: description of TM0544.2