BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0544.11
(200 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC87963 similar to GP|15081799|gb|AAK82554.1 At1g05070/T7A14_6 {... 109 6e-25
TC89329 similar to GP|15028201|gb|AAK76597.1 unknown protein {Ar... 103 3e-23
TC92424 28 2.4
TC89861 similar to GP|22022524|gb|AAM83220.1 At1g28060/F13K9_16 ... 28 2.4
TC89772 similar to GP|9759529|dbj|BAB10995.1 gene_id:K21L19.3~un... 28 3.1
TC77969 similar to GP|15450966|gb|AAK96754.1 Unknown protein {Ar... 27 5.3
AW586385 27 5.3
BQ141697 similar to GP|18159237|gb| conserved within P. aerophil... 27 6.9
CA919084 similar to GP|5923674|gb|A unknown protein {Arabidopsis... 27 6.9
TC89664 similar to PIR|A84830|A84830 hypothetical protein At2g40... 27 6.9
TC90874 similar to PIR|T52076|T52076 ABI3-interacting protein ai... 26 9.0
TC81788 similar to PIR|E86217|E86217 protein T27G7.10 [imported]... 26 9.0
TC79752 similar to GP|11994670|dbj|BAB02898. gene_id:K7P8.17~unk... 26 9.0
TC79013 similar to GP|21537154|gb|AAM61495.1 unknown {Arabidopsi... 26 9.0
AL367245 similar to GP|5923674|gb| unknown protein {Arabidopsis ... 26 9.0
BQ158023 26 9.0
TC87851 similar to GP|2398523|emb|CAA74049.1 Transcription facto... 26 9.0
>TC87963 similar to GP|15081799|gb|AAK82554.1 At1g05070/T7A14_6 {Arabidopsis
thaliana}, partial (80%)
Length = 941
Score = 109 bits (273), Expect = 6e-25
Identities = 62/151 (41%), Positives = 83/151 (54%), Gaps = 16/151 (10%)
Frame = +1
Query: 58 GPLSRWRLKE--------SASTESPCHHPCDCYCSSAE--SPPDTF------DCGKHDPV 101
GP W KE S+S+ S C PC C CSS S P DC K DP
Sbjct: 214 GPPLYWHFKEGLAAVKHSSSSSSSTCS-PCLCDCSSQPTFSIPQGLSNISFGDCAKPDPE 390
Query: 102 MNEEMNKDLLTMLSEELNLQRIVTNETLEQTDRLVMNARNASSHYQMETEKCNVAMETCE 161
+N + K+ +LSEEL L+ E + D ++ A+ +S YQ E +KCN METCE
Sbjct: 391 VNGDTEKNFAELLSEELKLRESQALENQRRADMALLEAKKVASQYQKEADKCNSGMETCE 570
Query: 162 EARERAEAELIEEHRVTALWENRAREYGWKD 192
+ARE+AE L+ + +VT+LWE RAR+ GWK+
Sbjct: 571 QAREKAELALVAQKKVTSLWELRARQKGWKE 663
>TC89329 similar to GP|15028201|gb|AAK76597.1 unknown protein {Arabidopsis
thaliana}, partial (87%)
Length = 828
Score = 103 bits (258), Expect = 3e-23
Identities = 56/153 (36%), Positives = 80/153 (51%), Gaps = 11/153 (7%)
Frame = +3
Query: 50 IVQVIVEFGPLSRWRLKESASTESPCHH--PCDCYC----SSAESPP-----DTFDCGKH 98
++ ++ GP WR K + S PC C+C S + P DCG +
Sbjct: 201 MISALMVCGPALYWRFKNGITLNSKLSSCPPCICHCPPPLSLFQLAPGLANLSVSDCGGN 380
Query: 99 DPVMNEEMNKDLLTMLSEELNLQRIVTNETLEQTDRLVMNARNASSHYQMETEKCNVAME 158
DP + EEM K + +L+EEL LQ V+ + + A+ S YQ E KC A E
Sbjct: 381 DPELREEMEKQFVDLLTEELKLQESVSEAHTRHMNITLAEAKRVGSQYQREAGKCVSATE 560
Query: 159 TCEEARERAEAELIEEHRVTALWENRAREYGWK 191
TCE+ARE+AEA L +E ++T +WE RAR+ GW+
Sbjct: 561 TCEQAREQAEAMLTKERKITLVWEKRARQMGWE 659
>TC92424
Length = 1043
Score = 28.1 bits (61), Expect = 2.4
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = +3
Query: 12 LTDSHPFISE-HTASSQSPRSS---NGSVSVDVHITCESPSDIVQVIVEFGPLSRWRLKE 67
L+ S P +S H +SQ P ++ + ++ H+T ++PS+I Q
Sbjct: 510 LSTSSPQMSNVHAPTSQIPTNTQQPHSTMKPTHHLTSKTPSNIQQ--------------- 644
Query: 68 SASTESPCHHP 78
S ST+ P HHP
Sbjct: 645 SLSTKQPTHHP 677
>TC89861 similar to GP|22022524|gb|AAM83220.1 At1g28060/F13K9_16
{Arabidopsis thaliana}, partial (26%)
Length = 790
Score = 28.1 bits (61), Expect = 2.4
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 119 NLQRIVTNETLEQTDRLVMNARNASSHYQMETEKCNVAME-TCEEARERAEAELIEE 174
NL +++ E + RL RNA++ + N+A + T E RE+ E +L ++
Sbjct: 284 NLHKVLGTEATQDPTRLEKEVRNAAAEREQAHIDRNIARKLTPAELREKKERKLFDD 454
>TC89772 similar to GP|9759529|dbj|BAB10995.1 gene_id:K21L19.3~unknown
protein {Arabidopsis thaliana}, partial (6%)
Length = 1230
Score = 27.7 bits (60), Expect = 3.1
Identities = 10/26 (38%), Positives = 12/26 (45%)
Frame = -2
Query: 75 CHHPCDCYCSSAESPPDTFDCGKHDP 100
CHH CY S+ DT H+P
Sbjct: 980 CHHQLQCYTSNLGHVQDTMPLAAHNP 903
>TC77969 similar to GP|15450966|gb|AAK96754.1 Unknown protein {Arabidopsis
thaliana}, partial (58%)
Length = 1033
Score = 26.9 bits (58), Expect = 5.3
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -3
Query: 135 LVMNARNASSHYQMETEKCNVAMETCEEARERAEAELIEEHRVTALW 181
L+ A + HY++ C+ ETC RER++ E + R W
Sbjct: 290 LLCQACGSLLHYKIACSLCHSRKETCILRRERSDWESEGKKRFEGWW 150
>AW586385
Length = 707
Score = 26.9 bits (58), Expect = 5.3
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 54 IVEFGPLSRWRLKESASTESPCHHPCD 80
IV F P+ +RLK+S S ++ CH CD
Sbjct: 380 IVPFHPV--FRLKQSVSFDAICHFVCD 306
>BQ141697 similar to GP|18159237|gb| conserved within P. aerophilum
{Pyrobaculum aerophilum}, partial (4%)
Length = 1368
Score = 26.6 bits (57), Expect = 6.9
Identities = 14/47 (29%), Positives = 24/47 (50%), Gaps = 2/47 (4%)
Frame = +3
Query: 122 RIVTNETLEQTDRLVM--NARNASSHYQMETEKCNVAMETCEEARER 166
R+ T ++TD + +A + Q +T+KC+ C +ARER
Sbjct: 1035 RVQCFRTRQRTDAITCRRHAIVETLRTQRQTQKCSATTRVCAQARER 1175
>CA919084 similar to GP|5923674|gb|A unknown protein {Arabidopsis thaliana},
partial (10%)
Length = 780
Score = 26.6 bits (57), Expect = 6.9
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +1
Query: 61 SRWRLKESASTESPCHHPCDCYCSSAESPPDTFDCGKHDPVMNEEMNKDLLTMLSEELNL 120
SR L AS +S HHP + + + T G H + ++MN+ LL +L L
Sbjct: 571 SRNPLISHASLQSILHHPTMIHQHNHHNHSCTHQPGHHYCGITQKMNQHLLPVLPHFSQL 750
Query: 121 Q 121
Q
Sbjct: 751 Q 753
>TC89664 similar to PIR|A84830|A84830 hypothetical protein At2g40480
[imported] - Arabidopsis thaliana, partial (17%)
Length = 744
Score = 26.6 bits (57), Expect = 6.9
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = +2
Query: 105 EMNKDLLTMLSEELNLQRIVTNETLEQTDRLVMNARNASSHYQMETEKCNVAMETCEEAR 164
++ K+L+ E L++ + LE T RLV N ++ + N+ + C++
Sbjct: 284 KLEKELIIKERETLDVLK-----ELESTKRLVENLKSKLQAEEESEANLNIKLNLCDDKE 448
Query: 165 ERAEAELIEEH 175
+ E E H
Sbjct: 449 NEKKEEEKENH 481
>TC90874 similar to PIR|T52076|T52076 ABI3-interacting protein aip1
[imported] - Arabidopsis thaliana, partial (19%)
Length = 1257
Score = 26.2 bits (56), Expect = 9.0
Identities = 17/67 (25%), Positives = 31/67 (45%)
Frame = +1
Query: 130 EQTDRLVMNARNASSHYQMETEKCNVAMETCEEARERAEAELIEEHRVTALWENRAREYG 189
+ TD + + + + E+ ++++ EEA A +IEEH + E + G
Sbjct: 34 DDTDDMFKRSNYPDAGISIHQEQAEISIQQ-EEASIATAAAVIEEHPYVHVSEYQPDVPG 210
Query: 190 WKDKRRT 196
D+RRT
Sbjct: 211 ISDRRRT 231
>TC81788 similar to PIR|E86217|E86217 protein T27G7.10 [imported] -
Arabidopsis thaliana, partial (6%)
Length = 710
Score = 26.2 bits (56), Expect = 9.0
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -1
Query: 74 PCHHPCDCYCSSAESPPD 91
P PC C C SA PPD
Sbjct: 467 PAAAPCCCDCCSAGDPPD 414
>TC79752 similar to GP|11994670|dbj|BAB02898. gene_id:K7P8.17~unknown protein
{Arabidopsis thaliana}, partial (2%)
Length = 2137
Score = 26.2 bits (56), Expect = 9.0
Identities = 19/68 (27%), Positives = 29/68 (41%), Gaps = 2/68 (2%)
Frame = +2
Query: 12 LTDSHPFISEHTASSQSPRSSNGSVSVDVHITCESPSDIVQVIVEFGPLSRWRL--KESA 69
L +HP S H+ Q S + S S H SPSD + V+ P++ +
Sbjct: 1337 LGPAHPSNSNHSQLQQKLHSGSTSTSSKQHQALVSPSD-SNIQVQVSPVTSGHITTPTQP 1513
Query: 70 STESPCHH 77
+ +P HH
Sbjct: 1514 AVGAPNHH 1537
>TC79013 similar to GP|21537154|gb|AAM61495.1 unknown {Arabidopsis
thaliana}, partial (42%)
Length = 1471
Score = 26.2 bits (56), Expect = 9.0
Identities = 20/71 (28%), Positives = 28/71 (39%)
Frame = -1
Query: 66 KESASTESPCHHPCDCYCSSAESPPDTFDCGKHDPVMNEEMNKDLLTMLSEELNLQRIVT 125
K +ST S C SS+ P+ KH P++ T + E+ I T
Sbjct: 652 KHPSSTSSSCSTSSSSSSSSSVIFPE-----KHPPLLETTTATACTTATTSEIRPGIITT 488
Query: 126 NETLEQTDRLV 136
T +TDR V
Sbjct: 487 QHTTIRTDRTV 455
>AL367245 similar to GP|5923674|gb| unknown protein {Arabidopsis thaliana},
partial (14%)
Length = 391
Score = 26.2 bits (56), Expect = 9.0
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = -3
Query: 61 SRWRLKESASTESPCHHPCDCYCSSAESPPDTFDCGKHDPVMNEEMNKDLLTMLSEELNL 120
SR L AS +S HHP + + + T G H + ++MN+ LL +L L
Sbjct: 188 SRNPLISHASLQSILHHPTMIHQHNHHNHSCTHQPGHHYCGITQKMNQHLLPVLPHFPQL 9
Query: 121 Q 121
Q
Sbjct: 8 Q 6
>BQ158023
Length = 407
Score = 26.2 bits (56), Expect = 9.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 1 MLFEIFSIHVNLTDSHPFISEHTASSQSPRSSNGSVSV 38
+ F IF + ++DSHPFI + SS + N S+S+
Sbjct: 72 LYFPIFMVSFPMSDSHPFII-YQLSSFGIYNKNVSISI 182
>TC87851 similar to GP|2398523|emb|CAA74049.1 Transcription factor
{Arabidopsis thaliana}, partial (24%)
Length = 1352
Score = 26.2 bits (56), Expect = 9.0
Identities = 9/35 (25%), Positives = 20/35 (56%)
Frame = -1
Query: 8 IHVNLTDSHPFISEHTASSQSPRSSNGSVSVDVHI 42
+H+ L + FI +H+ ++ P S + V + +H+
Sbjct: 446 VHIWLVTLYQFILKHSFGTRMPASDDSMVLLSIHV 342
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.315 0.128 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,127,106
Number of Sequences: 36976
Number of extensions: 100959
Number of successful extensions: 730
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of query: 200
length of database: 9,014,727
effective HSP length: 91
effective length of query: 109
effective length of database: 5,649,911
effective search space: 615840299
effective search space used: 615840299
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0544.11