TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0520.5
         (262 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG586266 similar to GP|7267666|em RNA-directed DNA polymerase-li...   121  2e-28
BG647708 weakly similar to GP|13786450|gb| putative reverse tran...    77  5e-15
BE248682 similar to GP|18568269|gb putative gag-pol polyprotein ...    69  1e-12
TC91765 weakly similar to GP|19881779|gb|AAM01180.1 Putative ret...    43  1e-11
TC83437 weakly similar to PIR|D86384|D86384 unknown protein [imp...    51  5e-07
BF650289 weakly similar to GP|9049283|dbj| orf129a {Beta vulgari...    45  2e-05
BQ148771                                                               28  0.13
TC80576 similar to GP|11139266|gb|AAG31651.1 PRLI-interacting fa...    28  3.6
TC91415 similar to GP|20856609|gb|AAM26675.1 At1g18620/F25I16_13...    27  6.1
AW736473 similar to PIR|C84201|C842 multidrug resistance protein...    27  6.1
AW697253 similar to GP|12597289|gb| FasL isoform {Homo sapiens},...    27  6.1
TC88436 similar to GP|9293867|dbj|BAB01770.1 DEAD-Box RNA helica...    27  8.0
TC85780 similar to SP|P49608|ACOC_CUCMA Aconitate hydratase  cyt...    27  8.0

>BG586266 similar to GP|7267666|em RNA-directed DNA polymerase-like protein
           {Arabidopsis thaliana}, partial (18%)
          Length = 789

 Score =  121 bits (304), Expect = 2e-28
 Identities = 70/205 (34%), Positives = 108/205 (52%), Gaps = 1/205 (0%)
 Frame = -3

Query: 3   DNIILAQEVMHTIHTQ-KKGRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 61
           DN+++  +++H +     K    +A+K D+ KAYDR++W+FLR  L   GF    +  IM
Sbjct: 637 DNVLITHKILHYLRQSGAKKHVSMAVKTDMTKAYDRIAWNFLREVLTRLGFHGIWISWIM 458

Query: 62  WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 121
             V     S L N        P RGLRQGDPLSPYLF+LC E L+   Q  + +GT   V
Sbjct: 457 ECVSTVSYSFLINGGPQGRVLPSRGLRQGDPLSPYLFILCTEVLSGLCQQALRKGTLPGV 278

Query: 122 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 181
           ++ ++   I+HL FADD + F +++     ++ + + ++  ASG  +N  KS + FS   
Sbjct: 277 KVARNCPPINHLLFADDTMFFGKSNASSCAILLSIMDKYRAASGRCIN*TKSAITFSSKT 98

Query: 182 DHRRQINLSHIAGISRASDLGKYLG 206
                  +     I++    GKYLG
Sbjct: 97  SQAIIDRVKGELKIAKEGGTGKYLG 23


>BG647708 weakly similar to GP|13786450|gb| putative reverse transcriptase
           {Oryza sativa}, partial (9%)
          Length = 708

 Score = 77.4 bits (189), Expect = 5e-15
 Identities = 38/104 (36%), Positives = 62/104 (59%)
 Frame = +1

Query: 83  PQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPVRITKDGVGISHLFFADDVLLF 142
           P++GLRQGDPLSPYLF+LC   L+  ++    +     +++ +    I+HL FADD LLF
Sbjct: 4   PEKGLRQGDPLSPYLFILCANVLSGLLKREGNKQNLHGIQVARSDPKITHLLFADDSLLF 183

Query: 143 CQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAVDHRRQ 186
            +A+  +   +   L  +  ASG  VN +KS + +S+ V ++ +
Sbjct: 184 ARANLTEAATIMQVLHSYQSASGQLVNFEKSEVSYSQNVPNQEK 315


>BE248682 similar to GP|18568269|gb putative gag-pol polyprotein {Zea mays},
           partial (1%)
          Length = 441

 Score = 69.3 bits (168), Expect = 1e-12
 Identities = 35/93 (37%), Positives = 57/93 (60%)
 Frame = +3

Query: 84  QRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPVRITKDGVGISHLFFADDVLLFC 143
           QRGL+QGDPL+P+LF+L  E ++  ++N V +  ++   + + G  +SHL +ADD L   
Sbjct: 21  QRGLKQGDPLAPFLFLLVAEGISGLMKNAVNRNLFQGFDVKRGGTRVSHLQYADDTLCIG 200

Query: 144 QASKEQLQLVNNTLKEFCEASGMKVNLDKSRML 176
             + + L  +   L+ F  ASG+KVN  KS ++
Sbjct: 201 MPTVDNLWTLKALLQGFEMASGLKVNFHKSSLI 299


>TC91765 weakly similar to GP|19881779|gb|AAM01180.1 Putative retroelement
           {Oryza sativa (japonica cultivar-group)}, partial (1%)
          Length = 625

 Score = 43.1 bits (100), Expect(3) = 1e-11
 Identities = 19/46 (41%), Positives = 29/46 (62%)
 Frame = +2

Query: 71  ILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQG 116
           +L N   +    P RGL+QGD LSPY+F++C+E L+  I +   +G
Sbjct: 128 VLVNNDAVDPIIPSRGLQQGDHLSPYIFIICVEGLSFLIPHAKERG 265



 Score = 39.7 bits (91), Expect(3) = 1e-11
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
 Frame = +3

Query: 133 LFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAVDHRRQINLSHI 192
           L F    L   +  +   Q++ N L  + E SG  ++L KS +  S+ V    + ++++I
Sbjct: 279 LLFEGAPLRSLRVEEHHAQIMKNILILYEEDSGKAISLRKS*IYCSRNVPDILKTSITYI 458

Query: 193 AGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSW-KNNLLNR 240
            G+       KYLG+P + GR     F+S+ G +      W KN  L R
Sbjct: 459 LGVQFMLGTCKYLGLPSMIGRDRTTTFSSIKGGV------WQKNKFLER 587



 Score = 22.3 bits (46), Expect(3) = 1e-11
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 31 LEKAYDRVSWDFLRATLYDFGFPPR 55
          + K Y+RV  D+L+  +   GF  R
Sbjct: 7  ISKVYNRVD*DYLKEIMIKMGFNNR 81


>TC83437 weakly similar to PIR|D86384|D86384 unknown protein [imported] -
           Arabidopsis thaliana, partial (6%)
          Length = 951

 Score = 50.8 bits (120), Expect = 5e-07
 Identities = 39/128 (30%), Positives = 63/128 (48%), Gaps = 4/128 (3%)
 Frame = +2

Query: 128 VGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAVDHRRQI 187
           V +SHL FA+D LL    +   ++ +   L  F   SG+KVN  KS ++           
Sbjct: 536 VVVSHLQFANDTLLLETKNWANIRALRAALVIF*AMSGLKVNFHKSGLVCVNIAPSW--- 706

Query: 188 NLSHIAGISRASDLGK----YLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRAGR 243
            LS  A +  +  +GK    YLG+P+       + +  ++ ++ +RLT W +  L+  GR
Sbjct: 707 -LSEAASVL-SWKVGKVPFLYLGMPIEGNSRRLSFWEPIVNRIKARLTGWNSRFLSFGGR 880

Query: 244 VCLAKSVL 251
           + L KSVL
Sbjct: 881 LVLLKSVL 904



 Score = 33.1 bits (74), Expect = 0.11
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +1

Query: 3   DNIILAQEVMHTIHTQKKGRGLVAIKIDLEKAYDRVSWDFLRATLYDFGF 52
           D I++A E +      KK   L+  K+D EKAY  V W +L + L  + F
Sbjct: 244 DGILIANEAVDEAKKLKKD--LLLFKVDFEKAYHSVDWAYLDSVLGRYVF 387


>BF650289 weakly similar to GP|9049283|dbj| orf129a {Beta vulgaris}, partial
           (69%)
          Length = 616

 Score = 45.4 bits (106), Expect = 2e-05
 Identities = 22/59 (37%), Positives = 37/59 (62%)
 Frame = +3

Query: 3   DNIILAQEVMHTIHTQKKGRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 61
           DNIIL+ E++ + +++K       +KIDL KAYD   W F++  + + GFP + V+ +M
Sbjct: 384 DNIILSHELVKS-YSRKGISPRCMVKIDLXKAYDSXEWPFIKHLMLELGFPYKFVNWVM 557


>BQ148771 
          Length = 680

 Score = 27.7 bits (60), Expect(2) = 0.13
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -3

Query: 215 TKAHFASLIGKMSSRLTSWKNNLLNRAGRVCLAKSVL 251
           TK    S+  ++   L +WK N L+ A RV LAKSV+
Sbjct: 618 TKKSRFSVYYQVHVMLANWKANHLSLARRVTLAKSVI 508



 Score = 23.9 bits (50), Expect(2) = 0.13
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 193 AGISRASDLGKYLGIP 208
           AG   A+ LGKY G+P
Sbjct: 679 AGFRXATSLGKYXGVP 632


>TC80576 similar to GP|11139266|gb|AAG31651.1 PRLI-interacting factor K
           {Arabidopsis thaliana}, partial (41%)
          Length = 933

 Score = 28.1 bits (61), Expect = 3.6
 Identities = 24/81 (29%), Positives = 40/81 (48%), Gaps = 2/81 (2%)
 Frame = +3

Query: 22  RGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIMWGVKCPKLSILWNCSKLPS- 80
           R L A+KI  ++ +++   +F  + L    +    V L+M+G+ C    +LWN   L S 
Sbjct: 441 RDLQALKILTKRKWEQPIQEF*NSLLMKVQW----VFLLMYGIICFLKVVLWNLH*LKSA 608

Query: 81  -FAPQRGLRQGDPLSPYLFVL 100
            F  Q+GL Q   L    F++
Sbjct: 609 MFGFQKGLMQNFNLKEEDFLI 671


>TC91415 similar to GP|20856609|gb|AAM26675.1 At1g18620/F25I16_13
           {Arabidopsis thaliana}, partial (3%)
          Length = 705

 Score = 27.3 bits (59), Expect = 6.1
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +2

Query: 140 LLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAVDHRRQINL 189
           +L  Q S+EQL  ++N  + FC+  G +V+L    + F   +D     NL
Sbjct: 128 ILNSQHSEEQLSEISNDSRSFCQ--GDEVSLQSDSVTFDSKLDIEVTSNL 271


>AW736473 similar to PIR|C84201|C842 multidrug resistance protein homolog
           [imported] - Halobacterium sp. NRC-1, partial (3%)
          Length = 443

 Score = 27.3 bits (59), Expect = 6.1
 Identities = 9/16 (56%), Positives = 12/16 (74%)
 Frame = -1

Query: 65  KCPKLSILWNCSKLPS 80
           +CP  S+ WNCS+ PS
Sbjct: 146 QCPSCSLDWNCSQCPS 99


>AW697253 similar to GP|12597289|gb| FasL isoform {Homo sapiens}, partial
           (16%)
          Length = 761

 Score = 27.3 bits (59), Expect = 6.1
 Identities = 11/28 (39%), Positives = 16/28 (56%)
 Frame = -1

Query: 66  CPKLSILWNCSKLPSFAPQRGLRQGDPL 93
           CP+ S     S  P+F PQR ++ G P+
Sbjct: 530 CPRASSAPTTSPAPTFPPQRHIKHGFPI 447


>TC88436 similar to GP|9293867|dbj|BAB01770.1 DEAD-Box RNA helicase-like
           protein {Arabidopsis thaliana}, partial (38%)
          Length = 1024

 Score = 26.9 bits (58), Expect = 8.0
 Identities = 11/19 (57%), Positives = 14/19 (72%)
 Frame = +2

Query: 69  LSILWNCSKLPSFAPQRGL 87
           LS+LW   + PSF+P RGL
Sbjct: 338 LSLLWRRKESPSFSPFRGL 394


>TC85780 similar to SP|P49608|ACOC_CUCMA Aconitate hydratase  cytoplasmic (EC
            4.2.1.3) (Citrate hydro-lyase) (Aconitase)., partial
            (97%)
          Length = 3124

 Score = 26.9 bits (58), Expect = 8.0
 Identities = 15/43 (34%), Positives = 21/43 (47%)
 Frame = -1

Query: 64   VKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLA 106
            V CP L  L+  SK  +F+P+       P SP+  +  M  LA
Sbjct: 2389 VSCPSLLYLFAASKTDNFSPEGTCIVLGPTSPFRNLFTMRILA 2261


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.327    0.141    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,377,343
Number of Sequences: 36976
Number of extensions: 117592
Number of successful extensions: 663
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of query: 262
length of database: 9,014,727
effective HSP length: 94
effective length of query: 168
effective length of database: 5,538,983
effective search space: 930549144
effective search space used: 930549144
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)