TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0490.9
         (157 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BF635063 weakly similar to PIR|F84486|F84 probable retroelement ...    93  4e-20
BG646342 weakly similar to PIR|F84486|F84 probable retroelement ...    55  2e-08
TC93152                                                                30  0.31
BF648150 similar to GP|14586969|gb| pol polyprotein {Citrus x pa...    30  0.40
TC93065                                                                27  2.6
TC77640 similar to GP|19347791|gb|AAL86346.1 unknown protein {Ar...    27  3.4
BF639770 similar to GP|9758924|dbj| gb|AAD50008.1~gene_id:MXI22....    25  9.9
TC77899 similar to GP|5802248|gb|AAD51627.1| seed maturation pro...    25  9.9

>BF635063 weakly similar to PIR|F84486|F84 probable retroelement pol
           polyprotein [imported] - Arabidopsis thaliana, partial
           (4%)
          Length = 677

 Score = 93.2 bits (230), Expect = 4e-20
 Identities = 54/154 (35%), Positives = 88/154 (57%), Gaps = 4/154 (2%)
 Frame = -2

Query: 2   LNPGGAKFEVTRLNGTRNFGLWQMRVKDLLAQQGLHKALRDK-SLDIAI--VDWNEMKKK 58
           L+  G+K ++ +  G  +FGLW+++++ +L QQ   KAL+ + SL + +   +  EM  K
Sbjct: 577 LSTMGSKRDIEKFTGDNDFGLWKVKMEAVLIQQKCEKALKGEVSLPVTMSRAEKTEMVDK 398

Query: 59  AAGLIKLCVSDDVMNHTLDLTTLNDVWDTLESQYMSKTLMDKLLVKQRRYSLKMQEGGDL 118
           A   I LC+ D V+       T   +W  L S YM+K+L  +  +KQ+ YS +M E   +
Sbjct: 397 ARSAIVLCLGDKVLREVAKERTAASMWAKL*SLYMTKSLAHRQFLKQQLYSFRMVESKAI 218

Query: 119 QDHVNAFNNILADLTRLGVKVDDENKAI-IFCAL 151
            + +  FN IL DL  + V+++DE KAI + CAL
Sbjct: 217 MEQLTEFNKILDDLENIEVQLEDEEKAILLLCAL 116


>BG646342 weakly similar to PIR|F84486|F84 probable retroelement pol
           polyprotein [imported] - Arabidopsis thaliana, partial
           (4%)
          Length = 599

 Score = 54.7 bits (130), Expect = 2e-08
 Identities = 29/93 (31%), Positives = 47/93 (50%)
 Frame = +2

Query: 59  AAGLIKLCVSDDVMNHTLDLTTLNDVWDTLESQYMSKTLMDKLLVKQRRYSLKMQEGGDL 118
           A   I LC+ D V+       T   +   LE  YM+K+L  +  +KQ+ YS KM E   +
Sbjct: 2   ARSAIVLCLGDKVLREVAKEPTATSMCAKLEYLYMTKSLAHRQFLKQQLYSFKMVESKAI 181

Query: 119 QDHVNAFNNILADLTRLGVKVDDENKAIIFCAL 151
            + +  FN I+ DL  + V ++D    +++C L
Sbjct: 182 TELLVEFNKIIGDLENIEVHLEDAGALMVWCCL 280


>TC93152 
          Length = 647

 Score = 30.4 bits (67), Expect = 0.31
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 52  WNEMKKKAAGLIKLCVSDDVMNHTLDLTTLNDVWDTLESQYMSKTLMD 99
           WN    KA  +I+L    + +N   DL +  + W+ L + Y S    D
Sbjct: 279 WNRRNGKALHIIQLACGPENINLIKDLQSAREAWNELSTHYSSDLSAD 422


>BF648150 similar to GP|14586969|gb| pol polyprotein {Citrus x paradisi},
           partial (3%)
          Length = 658

 Score = 30.0 bits (66), Expect = 0.40
 Identities = 18/90 (20%), Positives = 38/90 (42%)
 Frame = +2

Query: 52  WNEMKKKAAGLIKLCVSDDVMNHTLDLTTLNDVWDTLESQYMSKTLMDKLLVKQRRYSLK 111
           W+       G I   +SD + +      +  D+WD LE++YM +    K  +     + K
Sbjct: 179 WDNDDYICLGHILNGMSDSLFDIYQSSPSAKDLWDKLETRYMREDATSKKFLVSHFNNYK 358

Query: 112 MQEGGDLQDHVNAFNNILADLTRLGVKVDD 141
           M +   + + +     IL +  +  + +D+
Sbjct: 359 MVDNKSVMEQLYEIERILNNYKQHNMNMDE 448


>TC93065 
          Length = 783

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 14/54 (25%), Positives = 22/54 (39%)
 Frame = +3

Query: 58  KAAGLIKLCVSDDVMNHTLDLTTLNDVWDTLESQYMSKTLMDKLLVKQRRYSLK 111
           +A  +I   + DD+    L+L    + W  L  +Y       K+ V     SLK
Sbjct: 72  RALAIIHAALHDDIFIKILNLEIAKEAWSKLMEEYQGSERTKKMKVLNLEESLK 233


>TC77640 similar to GP|19347791|gb|AAL86346.1 unknown protein {Arabidopsis
           thaliana}, partial (97%)
          Length = 1493

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 122 VNAFNNILADLTRLGVKVDDENKAIIFC 149
           V  F+  +A  ++LG  + D+N A+IFC
Sbjct: 190 VTIFSTTVAVSSKLGGAISDKNLAVIFC 107


>BF639770 similar to GP|9758924|dbj| gb|AAD50008.1~gene_id:MXI22.14~strong
           similarity to unknown protein {Arabidopsis thaliana},
           partial (16%)
          Length = 399

 Score = 25.4 bits (54), Expect = 9.9
 Identities = 11/29 (37%), Positives = 17/29 (57%)
 Frame = +3

Query: 50  VDWNEMKKKAAGLIKLCVSDDVMNHTLDL 78
           ++WN  K K   L+ +CVS  + NH + L
Sbjct: 93  IEWNPKKDKF--LVAICVSGQMSNHLICL 173


>TC77899 similar to GP|5802248|gb|AAD51627.1| seed maturation protein PM39
           {Glycine max}, partial (7%)
          Length = 2260

 Score = 25.4 bits (54), Expect = 9.9
 Identities = 17/73 (23%), Positives = 28/73 (38%)
 Frame = -2

Query: 84  VWDTLESQYMSKTLMDKLLVKQRRYSLKMQEGGDLQDHVNAFNNILADLTRLGVKVDDEN 143
           +W        S+ L+ +  V Q  +    Q+G   Q H+  F  +   LTR       E 
Sbjct: 882 LWTMFPEDIHSEFLLHQ*SVAQTDHGF*HQKGIQCQQHMTGFLVLW*VLTRHAHSFSQEI 703

Query: 144 KAIIFCALYRALL 156
             ++ C L+   L
Sbjct: 702 PRVVLCLLFHHFL 664


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.321    0.137    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,030,610
Number of Sequences: 36976
Number of extensions: 40393
Number of successful extensions: 171
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of query: 157
length of database: 9,014,727
effective HSP length: 88
effective length of query: 69
effective length of database: 5,760,839
effective search space: 397497891
effective search space used: 397497891
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)