TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0476b.5
         (58 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG586326 similar to PIR|G84493|G8 probable retroelement pol poly...    28  0.72
TC77595 weakly similar to PIR|T18350|T18350 probable pol polypro...    28  0.94
BE997857 weakly similar to GP|12698918|gb hypothetical protein {...    27  2.1
TC84809 similar to PIR|T09167|T09167 probable peroxidase (EC 1.1...    26  2.7

>BG586326 similar to PIR|G84493|G8 probable retroelement pol polyprotein
           [imported] - Arabidopsis thaliana, partial (13%)
          Length = 736

 Score = 28.1 bits (61), Expect = 0.72
 Identities = 10/15 (66%), Positives = 12/15 (79%)
 Frame = +2

Query: 3   ILDEGHKSRLSIHPG 17
           I+ E HKSR S+HPG
Sbjct: 671 IMSEAHKSRFSVHPG 715


>TC77595 weakly similar to PIR|T18350|T18350 probable pol polyprotein - rice
           blast fungus gypsy retroelement (fragment), partial
           (14%)
          Length = 1708

 Score = 27.7 bits (60), Expect = 0.94
 Identities = 12/43 (27%), Positives = 20/43 (45%)
 Frame = +2

Query: 3   ILDEGHKSRLSIHPGMTKMYQDLKLHFWCPGMKKRVVEYVLTC 45
           ++ E H S  + HPG     + +   F+ PG  + V  +V  C
Sbjct: 179 LVQESHDSTAAGHPGRNGTLEIVSRKFFWPGQSQTVRRFVRNC 307


>BE997857 weakly similar to GP|12698918|gb hypothetical protein {Glycine
          max}, partial (40%)
          Length = 554

 Score = 26.6 bits (57), Expect = 2.1
 Identities = 14/48 (29%), Positives = 24/48 (49%)
 Frame = +2

Query: 9  KSRLSIHPGMTKMYQDLKLHFWCPGMKKRVVEYVLTCLTYQKAKVEAK 56
          K  +SI+ G+       K   W P  ++ +V  VL  L YQ+  ++A+
Sbjct: 32 KHFISIYIGINPFLL*RKGKLWLPSHQRNLVVMVLDLLVYQQDHIQAQ 175


>TC84809 similar to PIR|T09167|T09167 probable peroxidase (EC 1.11.1.7)
           (clone PC36) - spinach (fragment), partial (58%)
          Length = 871

 Score = 26.2 bits (56), Expect = 2.7
 Identities = 9/22 (40%), Positives = 14/22 (62%)
 Frame = +1

Query: 29  FWCPGMKKRVVEYVLTCLTYQK 50
           FW   +KKR+ +Y  +C+T  K
Sbjct: 580 FWTEKIKKRLKKYATSCMTVNK 645


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.322    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,899,554
Number of Sequences: 36976
Number of extensions: 18339
Number of successful extensions: 95
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of query: 58
length of database: 9,014,727
effective HSP length: 34
effective length of query: 24
effective length of database: 7,757,543
effective search space: 186181032
effective search space used: 186181032
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)