TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0476b.2
         (264 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC85359 weakly similar to PIR|C96592|C96592 hypothetical protein...    30  0.73
TC91600 similar to SP|Q9SZ30|HIS5_ARATH Imidazole glycerol phosp...    30  1.2
BE205528 similar to GP|12382006|d putative ABC transporter prote...    29  1.6
BQ141259 similar to GP|22136880|gb| unknown protein {Arabidopsis...    27  8.1
BG587938 homologue to GP|22655312|g putative ABC transporter {Ar...    27  8.1
TC77526 similar to GP|6177796|dbj|BAA86060.1 senescencs-related ...    27  8.1
BI264272 similar to GP|4204793|gb| P-glycoprotein {Solanum tuber...    27  8.1

>TC85359 weakly similar to PIR|C96592|C96592 hypothetical protein T7N22.2
            [imported] - Arabidopsis thaliana, partial (7%)
          Length = 1955

 Score = 30.4 bits (67), Expect = 0.73
 Identities = 34/128 (26%), Positives = 54/128 (41%), Gaps = 11/128 (8%)
 Frame = +2

Query: 96   ILSSWNGLIVVRLRWKKVLRLLICNPVTSSWA--PLRTRCGEYDANANVNIIIIPATAPT 153
            I++S NGL+ +         L+ICNPVT  +   P  T   ++   A   +       P 
Sbjct: 899  IVNSCNGLLCLS-ETSIGSPLVICNPVTREFTILPELTTTSDWFNRARARVQAGFGFQPK 1075

Query: 154  RNDYRLL-----SVTRQNK-IFPPYVLKEYNQIADQWQVLNPDMNLGDRKLNISKPAIVN 207
             N+Y+++      V R N+ +F   VL+ +      W+ +  D  +   KL    P  VN
Sbjct: 1076 TNEYKVIIMWNKYVRRNNRLVFERVVLEIHTLGTPSWRKVEVDPQISFLKL--LNPTCVN 1249

Query: 208  ---EWIYF 212
                WI F
Sbjct: 1250 GALHWIIF 1273


>TC91600 similar to SP|Q9SZ30|HIS5_ARATH Imidazole glycerol phosphate
           synthase hisHF  chloroplast precursor (IGP synthase)
           (ImGP synthase), partial (28%)
          Length = 715

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 17/44 (38%), Positives = 23/44 (51%)
 Frame = -1

Query: 178 NQIADQWQVLNPDMNLGDRKLNISKPAIVNEWIYFMSDNYHYMN 221
           NQIA ++QVL+ D+ L      I K   V +    M D + YMN
Sbjct: 538 NQIAQRFQVLSQDLLLAHSLH*IQKAIEVQDKFLKMGDPFQYMN 407


>BE205528 similar to GP|12382006|d putative ABC transporter protein {Oryza
           sativa (japonica cultivar-group)}, partial (14%)
          Length = 617

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 158 RLLSVTRQNKIFPPYVLKEYNQIADQWQVLNPDMNLGDRKLNISK 202
           R+     QN I  PYV    + +   W  L+PD+N   RK+ + +
Sbjct: 58  RISGYCEQNDIHSPYVTVYESLLYSAWLRLSPDINAETRKMFVEE 192


>BQ141259 similar to GP|22136880|gb| unknown protein {Arabidopsis thaliana},
           partial (5%)
          Length = 467

 Score = 26.9 bits (58), Expect = 8.1
 Identities = 11/37 (29%), Positives = 20/37 (53%)
 Frame = -2

Query: 84  TDFFNVVARSGKILSSWNGLIVVRLRWKKVLRLLICN 120
           TD F  +  S  +   +N + ++ L+WK  L + +CN
Sbjct: 202 TDIFLFIVLSK*VYG*FNNISMILLKWKIYLGICVCN 92


>BG587938 homologue to GP|22655312|g putative ABC transporter {Arabidopsis
           thaliana}, partial (19%)
          Length = 780

 Score = 26.9 bits (58), Expect = 8.1
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 99  SWNGLIVVRLRWKKVLRLLI 118
           SW GL+  RLR KK+L LL+
Sbjct: 436 SWEGLMQTRLRLKKLLGLLM 495


>TC77526 similar to GP|6177796|dbj|BAA86060.1 senescencs-related protein
           {Pyrus pyrifolia}, partial (92%)
          Length = 1725

 Score = 26.9 bits (58), Expect = 8.1
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = +1

Query: 153 TRNDYRLLSVTRQNKIFPPYVLKEYNQIADQWQVLNPDMNLGDRKLNISKPAIV 206
           TRN     S     K++P     ++   A + QV  PD+++    L++  P ++
Sbjct: 217 TRNSASRFSFNFSKKVYPRPSRVDFKVFASEGQVSEPDLSVKVNGLHMPNPFVI 378


>BI264272 similar to GP|4204793|gb| P-glycoprotein {Solanum tuberosum},
           partial (5%)
          Length = 678

 Score = 26.9 bits (58), Expect = 8.1
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 99  SWNGLIVVRLRWKKVLRLLI 118
           SW GL+  RLR KK+L LL+
Sbjct: 139 SWEGLMQTRLRLKKLLGLLM 198


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.325    0.140    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,957,876
Number of Sequences: 36976
Number of extensions: 153489
Number of successful extensions: 939
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of query: 264
length of database: 9,014,727
effective HSP length: 94
effective length of query: 170
effective length of database: 5,538,983
effective search space: 941627110
effective search space used: 941627110
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)