BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0476b.11
(556 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW687028 weakly similar to GP|9909176|dbj| hypothetical protein~... 238 5e-63
TC89654 weakly similar to PIR|T05644|T05644 hypothetical protein... 96 3e-49
TC82456 weakly similar to GP|18057159|gb|AAL58182.1 putative far... 121 6e-28
BG449141 similar to GP|15983442|gb At1g10240/F14N23_12 {Arabidop... 95 6e-20
BQ147857 weakly similar to GP|15983442|gb At1g10240/F14N23_12 {A... 80 2e-15
TC83834 similar to PIR|G96565|G96565 F6D8.26 [imported] - Arabid... 79 3e-15
TC89977 similar to GP|5764395|gb|AAD51282.1| far-red impaired re... 60 3e-09
CA917189 similar to PIR|T05645|T05 hypothetical protein F20D10.3... 57 2e-08
BE124675 weakly similar to GP|13365573|db hypothetical protein~s... 55 5e-08
TC79804 weakly similar to GP|6175165|gb|AAF04891.1| Mutator-like... 54 1e-07
CB892328 GP|15075873|em PROBABLE GLYCOSYL HYDROLASE PROTEIN {Sin... 50 3e-06
TC82323 similar to GP|7673677|gb|AAF66982.1| transposase {Zea ma... 47 1e-05
TC92024 similar to PIR|T05645|T05645 hypothetical protein F20D10... 42 8e-04
BE239532 40 0.002
BG451959 homologue to GP|6175165|gb| Mutator-like transposase {A... 35 0.099
AL375901 similar to GP|9759134|dbj mutator-like transposase-like... 31 1.1
CA859430 similar to GP|8131699|dbj cytoplasmic ribosomal protein... 29 4.1
TC92908 similar to GP|10140704|gb|AAG13538.1 putative gag-pol po... 28 7.1
TC79484 similar to GP|15912321|gb|AAL08294.1 AT4g17070/dl4565c {... 28 7.1
>AW687028 weakly similar to GP|9909176|dbj| hypothetical protein~similar to
Arabidopsis thaliana F20D10.300, partial (11%)
Length = 662
Score = 238 bits (607), Expect = 5e-63
Identities = 117/220 (53%), Positives = 149/220 (67%), Gaps = 1/220 (0%)
Frame = +1
Query: 223 DVIVFYSTYKKNKYNKPVVIFSGYNHHKETTIFACALVCDETIETYKWVLKALDEAMFGK 282
DV+ F +TYKKNKYN P+ IFSG NHH +T IF AL+ DETIE+YKWVL E M K
Sbjct: 1 DVLAFDTTYKKNKYNYPLCIFSGCNHHSQTIIFGVALLEDETIESYKWVLNRFLECMENK 180
Query: 283 QPKAVVTDGDKSMREAVKVVFPNATHRLCGWHIQQNCLEKIKIPDFLNEFKTLIYGNFTP 342
PKAVVTDGD SMREA+K VFP+A+HRLC WH+ +N E IK FL F+ +Y NFTP
Sbjct: 181 FPKAVVTDGDGSMREAIKQVFPDASHRLCAWHLHKNAQENIKKTPFLEGFRKAMYSNFTP 360
Query: 343 ERFETKWLQVIEKYGIGEEKWIKQTYETRQMWATAFMREKFFAGIRTTSLCEGINSFIKR 402
E+FE W ++I+K + W+ +TY + +WATA++R+KFF IRTTS CE IN+ +K
Sbjct: 361 EQFEDFWSELIQKNELEGNAWVIKTYANKSLWATAYLRDKFFGRIRTTSQCEAINAIVKT 540
Query: 403 YVQCKNSILDFIYNF-ERAVEEYRHNELASDFKSSYGEPV 441
Y + + F R E YR+NEL +DFKS + EPV
Sbjct: 541 YSRSQRQNF*IYA*FLNRF*EGYRNNELVADFKSKFTEPV 660
>TC89654 weakly similar to PIR|T05644|T05644 hypothetical protein F20D10.290
- Arabidopsis thaliana, partial (65%)
Length = 1358
Score = 95.9 bits (237), Expect(3) = 3e-49
Identities = 55/194 (28%), Positives = 88/194 (45%)
Frame = +1
Query: 362 KWIKQTYETRQMWATAFMREKFFAGIRTTSLCEGINSFIKRYVQCKNSILDFIYNFERAV 421
+W + Y RQ W ++R FF I E +N F +V ++ + +E+AV
Sbjct: 700 EWPQSMYNARQHWVPVYLRGSFFGEIPLNDGNECLNFFFDGHVNASTTLQLLVRQYEKAV 879
Query: 422 EEYRHNELASDFKSSYGEPVLITALSHIEQGAAKLLTLNMFREVRHMIQRALNLNLVERS 481
+ EL +DF++S PVL T S +E+ AA L T MF + + + + +
Sbjct: 880 STWHERELKADFETSNSNPVLRTP-SPMEKQAASLYTRKMFMKFQEELVGTMANPATKIE 1056
Query: 482 EIGTTVMIKFSICRHPNTQFLVIYDKNQNMFDCDCGFSEYVGIPCSHIICAMRTENMNEF 541
+ GT + + T V ++ ++ C C EY GI C HI+ R +N+
Sbjct: 1057DSGTITTYRVAKFGENQTSHTVAFNSSEMKASCSCQMFEYSGIVCRHILAVFRAKNVLTL 1236
Query: 542 PASLVSKRWLKTAK 555
P+ V KRW AK
Sbjct: 1237PSHYVLKRWTMNAK 1278
Score = 74.7 bits (182), Expect(3) = 3e-49
Identities = 32/86 (37%), Positives = 47/86 (54%)
Frame = +2
Query: 173 GDAASALSYLQRKGEKDPMFFFKFTRSGEENLENLFWCDGTSRLDYQAFGDVIVFYSTYK 232
G L YL+R ++ FF+ + N+FW D T R +Y FGD ++F +TYK
Sbjct: 116 GGGHQVLDYLKRMRAENHAFFYAVQSDVDNAGGNIFWADETCRTNYSYFGDTVIFDTTYK 295
Query: 233 KNKYNKPVVIFSGYNHHKETTIFACA 258
N+Y P F+G+NHH + +F CA
Sbjct: 296 TNQYRVPFASFTGFNHHGQPVLFGCA 373
Score = 64.3 bits (155), Expect(3) = 3e-49
Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Frame = +3
Query: 256 ACALVCDETIETYKWVLKALDEAMFGKQPKAVVTDGDKSMREAVKVVFPNATHRLCGWHI 315
A L+ +E+ +Y W+ K A+ G+ P ++ TD D ++ AV V P HR C W I
Sbjct: 366 AVLLILNESEPSYIWLFKTWLRAVSGRPPVSITTDLDPVIQVAVAQVLPPTRHRFCKWSI 545
Query: 316 QQNCLEKI-----KIPDFLNEFKTLIYGNFTPERFETKWLQVIEKYGI 358
+ K+ P F NEFK ++ + T + FE+ W ++E+Y I
Sbjct: 546 FRENRSKLAHLYQSNPTFDNEFKKCVHESVTIDEFESCWRSLLERYYI 689
>TC82456 weakly similar to GP|18057159|gb|AAL58182.1 putative far-red
impaired response protein {Oryza sativa}, partial (7%)
Length = 1244
Score = 121 bits (304), Expect = 6e-28
Identities = 55/160 (34%), Positives = 89/160 (55%)
Frame = +2
Query: 173 GDAASALSYLQRKGEKDPMFFFKFTRSGEENLENLFWCDGTSRLDYQAFGDVIVFYSTYK 232
GD + S+ R +++ F+ + N++NLFW D R Y+ FG+VI +TY
Sbjct: 713 GDVDAIHSFFHRMQKQNSQFYCAMDMDDKRNIQNLFWADARCRAAYEYFGEVITLDTTYL 892
Query: 233 KNKYNKPVVIFSGYNHHKETTIFACALVCDETIETYKWVLKALDEAMFGKQPKAVVTDGD 292
+KY+ P+V F G NHH +T + CA++ + +T W+ E M G P ++T+ D
Sbjct: 893 TSKYDLPLVPFVGVNHHGQTILLGCAILSNLDAKTLTWLFTRWLECMHGHAPNGIITEED 1072
Query: 293 KSMREAVKVVFPNATHRLCGWHIQQNCLEKIKIPDFLNEF 332
K+M+ A++V FP A HR C WHI + K+P+ L ++
Sbjct: 1073KAMKNAIEVAFPKARHRWCLWHIMK------KVPEMLGKY 1174
>BG449141 similar to GP|15983442|gb At1g10240/F14N23_12 {Arabidopsis
thaliana}, partial (33%)
Length = 690
Score = 95.1 bits (235), Expect = 6e-20
Identities = 43/129 (33%), Positives = 71/129 (54%)
Frame = +3
Query: 187 EKDPMFFFKFTRSGEENLENLFWCDGTSRLDYQAFGDVIVFYSTYKKNKYNKPVVIFSGY 246
+KDP F F++T LEN+ W +S Y FGD +VF +T++ ++ P+ ++ G
Sbjct: 270 DKDPNFKFEYTLDANNRLENIAWSYASSIQLYDIFGDAVVFDTTHRLTAFDMPLGLWVGI 449
Query: 247 NHHKETTIFACALVCDETIETYKWVLKALDEAMFGKQPKAVVTDGDKSMREAVKVVFPNA 306
N++ F C L+ DET+ ++ W +KA M GK P+ ++TD + ++EA+ P
Sbjct: 450 NNYGMPCFFGCVLLRDETVRSFSWAIKAFLGFMNGKAPQTILTDQNICLKEALSAEMPMT 629
Query: 307 THRLCGWHI 315
H C W I
Sbjct: 630 KHAFCIWMI 656
>BQ147857 weakly similar to GP|15983442|gb At1g10240/F14N23_12 {Arabidopsis
thaliana}, partial (26%)
Length = 560
Score = 80.1 bits (196), Expect = 2e-15
Identities = 51/180 (28%), Positives = 83/180 (45%), Gaps = 5/180 (2%)
Frame = +1
Query: 284 PKAVVTDGDKSMREAVKVVFPNATHRLCGWHIQQNCLE--KIKIPDFLNEFKT---LIYG 338
P+ ++TD + ++EA+ V P + H C WHI + + + +E+K +Y
Sbjct: 4 PQTLLTDHNTWLKEAIAVEMPESKHAFCIWHILSKFSDWXYLLLGSQYDEWKADFHRLYN 183
Query: 339 NFTPERFETKWLQVIEKYGIGEEKWIKQTYETRQMWATAFMREKFFAGIRTTSLCEGINS 398
E FE W Q+++KYG+ K I Y R WA F+R FFAG+ + E IN
Sbjct: 184 LEMXEDFEKSWRQMVDKYGLHANKHIISLYSLRTFWALPFLRRYFFAGLTSXCQTESINV 363
Query: 399 FIKRYVQCKNSILDFIYNFERAVEEYRHNELASDFKSSYGEPVLITALSHIEQGAAKLLT 458
FI+R++ ++ F+ V ++ A + + S IE AA +LT
Sbjct: 364 FIQRFLSAQSQPXRFLQQVADIV-DFNDRAGAKQXMQRKMQKXCLKTGSPIESHAATILT 540
>TC83834 similar to PIR|G96565|G96565 F6D8.26 [imported] - Arabidopsis
thaliana, partial (24%)
Length = 1032
Score = 79.3 bits (194), Expect = 3e-15
Identities = 38/101 (37%), Positives = 54/101 (52%)
Frame = +3
Query: 173 GDAASALSYLQRKGEKDPMFFFKFTRSGEENLENLFWCDGTSRLDYQAFGDVIVFYSTYK 232
GD + ++L R +P FF+ + E +L N W D SR F DVI F +TY
Sbjct: 687 GDTQAIYNFLCRMQLTNPNFFYLMDFNDEGHLRNALWVDAKSRAACGYFSDVIYFDNTYL 866
Query: 233 KNKYNKPVVIFSGYNHHKETTIFACALVCDETIETYKWVLK 273
NKY P+V G NHH ++ + C L+ E IE+YKW+ +
Sbjct: 867 VNKYEIPLVALVGINHHGQSVLLGCGLLAGEIIESYKWLFR 989
>TC89977 similar to GP|5764395|gb|AAD51282.1| far-red impaired response
protein {Arabidopsis thaliana}, partial (35%)
Length = 1523
Score = 59.7 bits (143), Expect = 3e-09
Identities = 39/172 (22%), Positives = 78/172 (44%), Gaps = 1/172 (0%)
Frame = +2
Query: 385 AGIRTTSLCEGINSFIKRYVQCKNSILDFIYNFERAVEEYRHNELASDFKSSYGEPVLIT 444
AG T E +NSF +Y+ K ++ +F+ + + E +DF + + +P L +
Sbjct: 2 AGTSTAQRSESMNSFFDKYIHKKITLKEFVKQYRLILLNRYDEEEIADFDTLHKQPALKS 181
Query: 445 ALSHIEQGAAKLLTLNMFREVRHMIQRALNLNLVERSEIGTTVMIKFSICRHP-NTQFLV 503
S E+ + + T +F++ + + R E+G +++ + + + +FLV
Sbjct: 182 P-SPWEKQMSTIYTHAIFKKFQVEVLGVAGCQ--SRIEVGDGTAVRYIVQDYEKDEEFLV 352
Query: 504 IYDKNQNMFDCDCGFSEYVGIPCSHIICAMRTENMNEFPASLVSKRWLKTAK 555
+ + + C C EY G C H + ++ + P+ + KRW K AK
Sbjct: 353 TWKELSSEVSCFCRLFEYKGFLCRHALSVLQRCGCSSVPSHYIMKRWTKDAK 508
>CA917189 similar to PIR|T05645|T05 hypothetical protein F20D10.300 -
Arabidopsis thaliana, partial (12%)
Length = 312
Score = 56.6 bits (135), Expect = 2e-08
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Frame = +1
Query: 278 AMFGKQPKAVVTDGDKSMREAVKVVFPNATHRLCGWHIQQNCLEK-----IKIPDFLNEF 332
AM G+ P ++ TD D ++ A+ VFP+ HR C WHI + C EK ++ P+F EF
Sbjct: 7 AMSGRPPLSITTDHDSVIQSAIMQVFPDTRHRFCKWHIFKQCQEKLSHIFLQFPNFEAEF 186
Query: 333 KTLIYGNFTPERFETKW 349
+ + + FE+ W
Sbjct: 187 HKCVNLTDSIDEFESCW 237
>BE124675 weakly similar to GP|13365573|db hypothetical protein~similar to
Arabidopsis thaliana F20D10.300, partial (4%)
Length = 448
Score = 55.5 bits (132), Expect = 5e-08
Identities = 38/142 (26%), Positives = 62/142 (42%), Gaps = 3/142 (2%)
Frame = +2
Query: 417 FERAVEEYRHNELASDFKSSYGEPVL---ITALSHIEQGAAKLLTLNMFREVRHMIQRAL 473
FER VEE R+ E+ + + P L + L H A+ T F + +++L
Sbjct: 2 FERIVEEQRYKEIEASDEMKGCLPKLMGNVVVLKH----ASVAYTPRAFEVFQQRYEKSL 169
Query: 474 NLNLVERSEIGTTVMIKFSICRHPNTQFLVIYDKNQNMFDCDCGFSEYVGIPCSHIICAM 533
N+ + + G K + H Q+ V + + N C C E+VG CSH + +
Sbjct: 170 NVIVNQHKRDGYLFEYKVNTYGHAR-QYTVTFSSSDNTVVCSCMKFEHVGFLCSHALKVL 346
Query: 534 RTENMNEFPASLVSKRWLKTAK 555
N+ P+ + KRW K A+
Sbjct: 347 DNRNIKVVPSRYILKRWTKDAR 412
>TC79804 weakly similar to GP|6175165|gb|AAF04891.1| Mutator-like transposase
{Arabidopsis thaliana}, partial (57%)
Length = 2129
Score = 54.3 bits (129), Expect = 1e-07
Identities = 65/305 (21%), Positives = 122/305 (39%), Gaps = 4/305 (1%)
Frame = +1
Query: 233 KNKYNKPVVIFSGYNHHKETTIFACALVCDETIETYKWVLKALDEAMFGK---QPKAV-V 288
K+KY + + ++ A A+V E E++ W L L A+ P+ + +
Sbjct: 784 KSKYLSTFLSATSFDADGGLFPLAFAVVDVENDESWTWFLSELHNALEVNTECMPQIIFL 963
Query: 289 TDGDKSMREAVKVVFPNATHRLCGWHIQQNCLEKIKIPDFLNEFKTLIYGNFTPERFETK 348
+DG K + +A++ FP ++H C H+ +N ++ K ++ + Y T F K
Sbjct: 964 SDGQKGIVDAIRRKFPRSSHAFCMRHLSENIGKEFKNSRLIHLLWSAAYAT-TINAFREK 1140
Query: 349 WLQVIEKYGIGEEKWIKQTYETRQMWATAFMREKFFAGIRTTSLCEGINSFIKRYVQCKN 408
+ IE+ W++ + ++ WA +F G R L I F K ++ +
Sbjct: 1141 MAE-IEEVSPNASMWLQHFHPSQ--WALV-----YFEGTRYGHLSSNIEEFNKWILEAQE 1296
Query: 409 SILDFIYNFERAVEEYRHNELASDFKSSYGEPVLITALSHIEQGAAKLLTLNMFREVRHM 468
L I ER + S K+ + + L ++ +LT + R +
Sbjct: 1297 --LPIIQVIER---------IQSKLKTEFDDRRLKSS------SWCSVLTPSSERRMVEA 1425
Query: 469 IQRALNLNLVERSEIGTTVMIKFSICRHPNTQFLVIYDKNQNMFDCDCGFSEYVGIPCSH 528
I RA +++ E ++F + + + N C C + GIPCSH
Sbjct: 1426 INRASTYQVLKSDE------VEFEVISADRSDIV-----NIGSHSCSCRDWQLYGIPCSH 1572
Query: 529 IICAM 533
+ A+
Sbjct: 1573 AVAAL 1587
>CB892328 GP|15075873|em PROBABLE GLYCOSYL HYDROLASE PROTEIN {Sinorhizobium
meliloti}, partial (1%)
Length = 828
Score = 49.7 bits (117), Expect = 3e-06
Identities = 24/51 (47%), Positives = 31/51 (60%)
Frame = +1
Query: 172 AGDAASALSYLQRKGEKDPMFFFKFTRSGEENLENLFWCDGTSRLDYQAFG 222
AGDA S L++LQ K +D MF++ E L N+FW DG S +DY A G
Sbjct: 670 AGDAQSLLNHLQSKQAQDSMFYYSVQLDHESRLNNVFWRDGKSVVDYIATG 822
>TC82323 similar to GP|7673677|gb|AAF66982.1| transposase {Zea mays},
partial (2%)
Length = 1165
Score = 47.4 bits (111), Expect = 1e-05
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +1
Query: 504 IYDKNQNMFDCDCGFSEYVGIPCSHIICAMRTENMNEFPASLVSKRWLKTAK 555
+Y+ F C C E GIPC H+ M+ E+++ P LV RW K AK
Sbjct: 1 VYNAASLEFQCSCRLFESRGIPCCHVFFVMKEEDVDHIPKCLVMTRWTKNAK 156
>TC92024 similar to PIR|T05645|T05645 hypothetical protein F20D10.300 -
Arabidopsis thaliana, partial (11%)
Length = 938
Score = 41.6 bits (96), Expect = 8e-04
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 514 CDCGFSEYVGIPCSHIICAMRTENMNEFPASLVSKRWLKTAKA 556
C C E+ G+ C HI+ R N+ P+ + KRW K AK+
Sbjct: 93 CSCQMFEFSGLLCRHILAVFRVTNVLTLPSHYILKRWTKNAKS 221
>BE239532
Length = 645
Score = 40.0 bits (92), Expect = 0.002
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +3
Query: 497 PNTQFLVIYDKNQNMFDCDCGFSEYVGIPCSHIICAMRTENMNEFPASLVSKRWLKTAKA 556
PN ++ V +D + +C C + +GI CSH + + + P KRW K A++
Sbjct: 189 PNKKYAVTFDSSNMKINCSCRKFDSMGILCSHALRIYNIKGILRIPDQYFLKRWSKNARS 368
>BG451959 homologue to GP|6175165|gb| Mutator-like transposase {Arabidopsis
thaliana}, partial (28%)
Length = 658
Score = 34.7 bits (78), Expect = 0.099
Identities = 22/92 (23%), Positives = 42/92 (44%), Gaps = 4/92 (4%)
Frame = +2
Query: 231 YKKNKYNKPVVIFSGYNHHKETTIFACALVCDETIETYKWVLKALD---EAMFGKQPK-A 286
Y K+KY +++ +G++ A +V +E + + W L L E P+
Sbjct: 371 YLKSKYLGTLLLATGFDGDGALFPLAFGVVDEENDDNWMWFLSKLHNLLEINTENMPRLT 550
Query: 287 VVTDGDKSMREAVKVVFPNATHRLCGWHIQQN 318
+++D + + + V+ FP A H C H+ N
Sbjct: 551 ILSDRQQGIVDGVEANFPTAFHGFCMRHLSDN 646
>AL375901 similar to GP|9759134|dbj mutator-like transposase-like protein
{Arabidopsis thaliana}, partial (27%)
Length = 493
Score = 31.2 bits (69), Expect = 1.1
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +3
Query: 303 FPNATHRLCGWHIQQNCLEKIKIPDFLNEFKTLIYGNFTPERFETKWLQVIE 354
FP+A+H C ++ +N + K +N F +Y T FE+K ++IE
Sbjct: 9 FPSASHGFCLRYVSENFRDTFKNTKLVNIFWNAVYA-LTAAEFESKITEMIE 161
>CA859430 similar to GP|8131699|dbj cytoplasmic ribosomal protein S13 {Panax
ginseng}, complete
Length = 575
Score = 29.3 bits (64), Expect = 4.1
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = -3
Query: 388 RTTSLCEGINSFIKRYVQCKNSILDFIYNFERAVEEYRHNELASDFKSSYGEPVL 442
R T +C+G+ F C + ++N E V Y ELA + P+L
Sbjct: 216 RYTPICDGLMPFFAYLQICSQTSSGVVFNHEGGVRRYGKAELAIPLPGACIRPIL 52
>TC92908 similar to GP|10140704|gb|AAG13538.1 putative gag-pol polyprotein
{Oryza sativa}, partial (1%)
Length = 638
Score = 28.5 bits (62), Expect = 7.1
Identities = 23/88 (26%), Positives = 37/88 (41%)
Frame = +2
Query: 372 QMWATAFMREKFFAGIRTTSLCEGINSFIKRYVQCKNSILDFIYNFERAVEEYRHNELAS 431
Q W A +E TS E + K++V C+ + I+ +E+Y+ +A
Sbjct: 311 QEWLAAMEQEIQVLEENNTSTLEPLREG-KKWVDCR-PVYKIIHKANGEIEKYKAQLVAK 484
Query: 432 DFKSSYGEPVLITALSHIEQGAAKLLTL 459
DF GE LS+ + LLT+
Sbjct: 485 DFVQVEGEDF*DLCLSNKDDNCRCLLTI 568
>TC79484 similar to GP|15912321|gb|AAL08294.1 AT4g17070/dl4565c {Arabidopsis
thaliana}, partial (40%)
Length = 685
Score = 28.5 bits (62), Expect = 7.1
Identities = 15/52 (28%), Positives = 30/52 (56%), Gaps = 4/52 (7%)
Frame = +2
Query: 4 WCFVLRRMLLNFTNTMPISKVLVQ----GKMMSVVIERVILLVVNWCVIGKV 51
W +++RRML + I VQ +S+++ + ++++VN CV+GK+
Sbjct: 224 WIWLVRRMLEGVVEGLKIWSFGVQL*NGVPSLSLILLKNVVILVNLCVLGKM 379
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.336 0.144 0.474
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,581,965
Number of Sequences: 36976
Number of extensions: 268504
Number of successful extensions: 2030
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 1521
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 491
Number of HSP's gapped (non-prelim): 1604
length of query: 556
length of database: 9,014,727
effective HSP length: 101
effective length of query: 455
effective length of database: 5,280,151
effective search space: 2402468705
effective search space used: 2402468705
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0476b.11