TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0476a.1
         (57 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC82700 similar to GP|23617236|dbj|BAC20903. hypothetical protei...    82  4e-17
TC83966 weakly similar to GP|23617236|dbj|BAC20903. hypothetical...    50  1e-07
BF637405                                                               26  3.6
TC87894 similar to GP|12005328|gb|AAG44394.1 unknown {Hevea bras...    25  8.0
TC86895 similar to PIR|E96688|E96688 unknown protein  33791-3152...    25  8.0
TC77547 similar to PIR|T48354|T48354 hypothetical protein F12E4....    25  8.0

>TC82700 similar to GP|23617236|dbj|BAC20903. hypothetical protein~similar
           to Arabidopsis thaliana chromosome 4  At4g13970, partial
           (39%)
          Length = 1066

 Score = 82.0 bits (201), Expect = 4e-17
 Identities = 41/56 (73%), Positives = 48/56 (85%)
 Frame = +3

Query: 1   RRRRVIYRSTHELDANDVVSISMWVESHLNCVFFYEDFSNSDPFILGIQTE*QLQR 56
           R+ R I RST+ELDA+D VSISMWVES  + VFFY+DFS+SDPFILGIQTE QLQ+
Sbjct: 729 RQEREIRRSTYELDADDSVSISMWVESRQSNVFFYQDFSDSDPFILGIQTEWQLQQ 896


>TC83966 weakly similar to GP|23617236|dbj|BAC20903. hypothetical
           protein~similar to Arabidopsis thaliana chromosome 4
           At4g13970, partial (13%)
          Length = 720

 Score = 50.4 bits (119), Expect = 1e-07
 Identities = 21/53 (39%), Positives = 36/53 (67%)
 Frame = +3

Query: 4   RVIYRSTHELDANDVVSISMWVESHLNCVFFYEDFSNSDPFILGIQTE*QLQR 56
           R I+ S+ EL  N+  S+ +W++ H   +F+++D S S+ FI+ IQT+ QLQ+
Sbjct: 201 RTIHNSSRELLGNEECSVKIWIQRHQKDIFYFQDNSGSESFIVAIQTDWQLQQ 359


>BF637405 
          Length = 666

 Score = 25.8 bits (55), Expect = 3.6
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +2

Query: 17  DVVSISMWVESHLNCVFFY 35
           ++ S+ +W+ESH+  V+FY
Sbjct: 500 EMSSLPLWLESHVALVYFY 556


>TC87894 similar to GP|12005328|gb|AAG44394.1 unknown {Hevea brasiliensis},
           partial (26%)
          Length = 997

 Score = 24.6 bits (52), Expect = 8.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 1   RRRRVIYRSTHELDANDVVSISMWVESHLNCVF 33
           + R + Y+S        ++S S+WVES + C+F
Sbjct: 618 KEREISYKSGSSYGQRSILSNSIWVES-ICCLF 523


>TC86895 similar to PIR|E96688|E96688 unknown protein  33791-31527
           [imported] - Arabidopsis thaliana, partial (63%)
          Length = 1857

 Score = 24.6 bits (52), Expect = 8.0
 Identities = 16/46 (34%), Positives = 21/46 (44%)
 Frame = -2

Query: 10  THELDANDVVSISMWVESHLNCVFFYEDFSNSDPFILGIQTE*QLQ 55
           T+   + D V +S+  ES   C F    F N   FILG +    LQ
Sbjct: 302 TNRNQSFDKVDLSLRTESLFRCPFSSLPFENCILFILGDEDPCDLQ 165


>TC77547 similar to PIR|T48354|T48354 hypothetical protein F12E4.60 -
            Arabidopsis thaliana, partial (53%)
          Length = 2073

 Score = 24.6 bits (52), Expect = 8.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 18   VVSISMWVESHLNCVFFYEDFSNSD 42
            V+ IS W E H N ++   D ++S+
Sbjct: 1545 VIFISFWAEVHYNSIYPQGDITSSE 1619


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.335    0.144    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,085,729
Number of Sequences: 36976
Number of extensions: 23192
Number of successful extensions: 235
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of query: 57
length of database: 9,014,727
effective HSP length: 33
effective length of query: 24
effective length of database: 7,794,519
effective search space: 187068456
effective search space used: 187068456
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 51 (24.3 bits)