BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0437b.10
(101 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI310847 similar to GP|13346155|gb| bZIP protein DPBF3 {Arabidop... 71 8e-14
TC93710 similar to PIR|T51273|T51273 promoter-binding factor-lik... 64 9e-12
TC88567 similar to SP|P42777|GBF4_ARATH G-box binding factor 4. ... 44 1e-05
BE941734 similar to GP|7406677|emb| putative ripening-related bZ... 44 1e-05
TC82668 weakly similar to GP|13346157|gb|AAK19602.1 bZIP protein... 42 5e-05
AJ502380 similar to GP|13346159|gb| bZIP protein DPBF5 {Arabidop... 39 2e-04
TC77220 similar to GP|22597162|gb|AAN03468.1 bZIP transcription ... 28 0.57
TC87257 similar to GP|16323382|gb|AAL15185.1 unknown protein {Ar... 28 0.57
TC77200 similar to GP|22597162|gb|AAN03468.1 bZIP transcription ... 28 0.57
CB895144 28 0.74
BF636159 similar to GP|22136764|gb unknown protein {Arabidopsis ... 27 1.3
TC82783 similar to GP|22136764|gb|AAM91701.1 unknown protein {Ar... 27 1.3
CB893590 25 4.8
TC78321 similar to GP|21689841|gb|AAM67564.1 unknown protein {Ar... 25 6.3
TC81320 similar to GP|13430618|gb|AAK25931.1 unknown protein {Ar... 24 8.2
>BI310847 similar to GP|13346155|gb| bZIP protein DPBF3 {Arabidopsis
thaliana}, partial (30%)
Length = 670
Score = 70.9 bits (172), Expect = 8e-14
Identities = 42/74 (56%), Positives = 47/74 (62%)
Frame = +2
Query: 13 QKHGRKMMALEDMVENTVDRRQKRMIKN*VSGASSRAVKQAYINVLERNV*SLEVEIERL 72
Q GRK EDMVE TV+RRQKRMIKN S A SRA KQAY N LE V LE E E L
Sbjct: 251 QMPGRKRSTPEDMVEKTVERRQKRMIKNRESAARSRARKQAYTNELEIKVSRLEEENEML 430
Query: 73 MKQTAIQNLLTQIP 86
K+ ++N+L P
Sbjct: 431 RKRKELENMLPCAP 472
>TC93710 similar to PIR|T51273|T51273 promoter-binding factor-like protein
- Arabidopsis thaliana, partial (30%)
Length = 598
Score = 63.9 bits (154), Expect = 9e-12
Identities = 39/74 (52%), Positives = 46/74 (61%)
Frame = +1
Query: 13 QKHGRKMMALEDMVENTVDRRQKRMIKN*VSGASSRAVKQAYINVLERNV*SLEVEIERL 72
Q GRK +A +VE TV+RRQKRMIKN S A SRA KQAY LE V LE E ERL
Sbjct: 7 QTQGRKRVASGVVVEKTVERRQKRMIKNRESAARSRARKQAYTQELEIKVSHLEEENERL 186
Query: 73 MKQTAIQNLLTQIP 86
+ I+ +L +P
Sbjct: 187KRLHEIERVLPSMP 228
>TC88567 similar to SP|P42777|GBF4_ARATH G-box binding factor 4. [Mouse-ear
cress] {Arabidopsis thaliana}, partial (32%)
Length = 1250
Score = 43.9 bits (102), Expect = 1e-05
Identities = 28/64 (43%), Positives = 37/64 (57%)
Frame = +1
Query: 14 KHGRKMMALEDMVENTVDRRQKRMIKN*VSGASSRAVKQAYINVLERNV*SLEVEIERLM 73
K GR +M + ++ +RQ+RMIKN S A SR KQAY LE LE E ++LM
Sbjct: 580 KRGRPVM---EQLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVKLEEENDKLM 750
Query: 74 KQTA 77
K+ A
Sbjct: 751 KEKA 762
>BE941734 similar to GP|7406677|emb| putative ripening-related bZIP protein
{Vitis vinifera}, partial (18%)
Length = 607
Score = 43.9 bits (102), Expect = 1e-05
Identities = 25/46 (54%), Positives = 30/46 (64%)
Frame = +2
Query: 30 VDRRQKRMIKN*VSGASSRAVKQAYINVLERNV*SLEVEIERLMKQ 75
++RRQ+RMIKN S A SRA KQAY LE V L+ E E L K+
Sbjct: 5 IERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELQKK 142
>TC82668 weakly similar to GP|13346157|gb|AAK19602.1 bZIP protein DPBF4
{Arabidopsis thaliana}, partial (32%)
Length = 973
Score = 41.6 bits (96), Expect = 5e-05
Identities = 31/73 (42%), Positives = 40/73 (54%)
Frame = +1
Query: 3 TSSTYDVSNIQKHGRKMMALEDMVENTVDRRQKRMIKN*VSGASSRAVKQAYINVLERNV 62
+SS+ + K GRK A D E ++RR +R IKN S A SRA KQAY N L V
Sbjct: 205 SSSSISSLSDAKPGRKRDA-PDAYEKALERRLRRKIKNRESAARSRARKQAYHNELVTKV 381
Query: 63 *SLEVEIERLMKQ 75
LE + +L K+
Sbjct: 382 TLLEQQNMQLKKE 420
>AJ502380 similar to GP|13346159|gb| bZIP protein DPBF5 {Arabidopsis
thaliana}, partial (13%)
Length = 472
Score = 39.3 bits (90), Expect = 2e-04
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = +2
Query: 26 VENTVDRRQKRMIKN*VSGASSRAVKQAY 54
VE V+RRQKRMIKN S A SRA KQAY
Sbjct: 380 VEKGVERRQKRMIKNRESAARSRARKQAY 466
>TC77220 similar to GP|22597162|gb|AAN03468.1 bZIP transcription factor ATB2
{Glycine max}, partial (65%)
Length = 1341
Score = 28.1 bits (61), Expect = 0.57
Identities = 27/84 (32%), Positives = 41/84 (48%)
Frame = +3
Query: 1 SCTSSTYDVSNIQKHGRKMMALEDMVENTVDRRQKRMIKN*VSGASSRAVKQAYINVLER 60
S TSS Y S + G + ED++ R++KRMI N S SR KQ +++ L
Sbjct: 573 SGTSSGY--STLPNSGSE----EDLMLLMDQRKRKRMISNRESARRSRMRKQKHLDDLAV 734
Query: 61 NV*SLEVEIERLMKQTAIQNLLTQ 84
+ L E ++++ NL TQ
Sbjct: 735 QLSQLRNENQQILTSV---NLTTQ 797
>TC87257 similar to GP|16323382|gb|AAL15185.1 unknown protein {Arabidopsis
thaliana}, partial (64%)
Length = 747
Score = 28.1 bits (61), Expect = 0.57
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -2
Query: 65 LEVEIERLMKQTAIQNLLTQIPCCFVHAFLTCINSH 100
L++E +L+ ++ N +T P +HA LT INS+
Sbjct: 287 LDIEKHKLVIVVSVSNKVTDGPRKCIHALLTLINSY 180
>TC77200 similar to GP|22597162|gb|AAN03468.1 bZIP transcription factor ATB2
{Glycine max}, partial (84%)
Length = 1481
Score = 28.1 bits (61), Expect = 0.57
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +1
Query: 23 EDMVENTVDRRQKRMIKN*VSGASSRAVKQAYINVLERNV*SLEVEIERLMKQTAIQNLL 82
ED+ R++KRMI N S SR KQ +++ L V L E + ++ N+
Sbjct: 592 EDLQALMDQRKRKRMISNRESARRSRMRKQKHLDDLVSQVSKLRKENQEILTSV---NIT 762
Query: 83 TQ 84
TQ
Sbjct: 763 TQ 768
>CB895144
Length = 738
Score = 27.7 bits (60), Expect = 0.74
Identities = 8/29 (27%), Positives = 16/29 (54%)
Frame = +2
Query: 72 LMKQTAIQNLLTQIPCCFVHAFLTCINSH 100
L+ + N + ++ CC++H F+ I H
Sbjct: 5 LLSSFIVDNFVNRLICCYIHIFVVVIGYH 91
>BF636159 similar to GP|22136764|gb unknown protein {Arabidopsis thaliana},
partial (21%)
Length = 683
Score = 26.9 bits (58), Expect = 1.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 3 TSSTYDVSNIQKHGRKMMALEDMVEN 28
T Y+ + +QKH KM ALE +++N
Sbjct: 348 TEPIYNETYLQKHPSKMRALEHVIQN 271
>TC82783 similar to GP|22136764|gb|AAM91701.1 unknown protein {Arabidopsis
thaliana}, partial (36%)
Length = 823
Score = 26.9 bits (58), Expect = 1.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 3 TSSTYDVSNIQKHGRKMMALEDMVEN 28
T Y+ + +QKH KM ALE +++N
Sbjct: 394 TEPIYNETYLQKHPSKMRALEHVIQN 471
>CB893590
Length = 411
Score = 25.0 bits (53), Expect = 4.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 79 QNLLTQIPCCFVHAFLTCIN 98
Q+ Q+P FVH+ TCIN
Sbjct: 61 QSSFAQLPTIFVHSPSTCIN 2
>TC78321 similar to GP|21689841|gb|AAM67564.1 unknown protein {Arabidopsis
thaliana}, partial (80%)
Length = 2093
Score = 24.6 bits (52), Expect = 6.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 62 V*SLEVEIERLMKQTAIQNLLTQIPCCF 89
+*+L +E+ R M + +I N + PCCF
Sbjct: 1564 L*NLSIEV*RNMWRNSINNSVGFQPCCF 1647
>TC81320 similar to GP|13430618|gb|AAK25931.1 unknown protein {Arabidopsis
thaliana}, partial (6%)
Length = 635
Score = 24.3 bits (51), Expect = 8.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 69 IERLMKQTAIQNLLTQIPCCFVHAFLTCINSHP 101
IE ++Q NLL+++P C V +F NS P
Sbjct: 456 IEDPLEQELCSNLLSELPPCNVESF----NSQP 542
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.333 0.138 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,786,361
Number of Sequences: 36976
Number of extensions: 22965
Number of successful extensions: 327
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of query: 101
length of database: 9,014,727
effective HSP length: 77
effective length of query: 24
effective length of database: 6,167,575
effective search space: 148021800
effective search space used: 148021800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 50 (23.9 bits)
Lotus: description of TM0437b.10