BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0404.10
(989 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC87209 similar to GP|9663767|emb|CAC01237.1 RNA Binding Protein... 59 9e-09
TC84335 weakly similar to GP|21741678|emb|CAD40580. oj000126_13.... 53 5e-07
TC90607 similar to GP|20466724|gb|AAM20679.1 unknown protein {Ar... 52 1e-06
TC76334 similar to GP|9663767|emb|CAC01237.1 RNA Binding Protein... 52 1e-06
TC89523 weakly similar to GP|17065276|gb|AAL32792.1 Unknown prot... 52 1e-06
TC76886 similar to PIR|T01932|T01932 RNA binding protein homolog... 50 4e-06
TC79394 weakly similar to PIR|T49019|T49019 probable RNA binding... 49 7e-06
TC80442 similar to PIR|F84793|F84793 probable RNA-binding protei... 47 3e-05
TC80819 weakly similar to GP|10140689|gb|AAG13524.1 putative non... 38 5e-05
BE942328 weakly similar to GP|21741678|emb oj000126_13.2 {Oryza ... 47 5e-05
TC76331 similar to GP|7673355|gb|AAF66823.1| poly(A)-binding pro... 45 2e-04
AW687209 weakly similar to GP|9757907|dbj| contains similarity t... 45 2e-04
TC90571 similar to GP|15594035|emb|CAC69852. nucleic acid bindin... 45 2e-04
CA859848 similar to GP|12842203|dbj data source:MGD source key:... 44 2e-04
TC76556 similar to PIR|S71779|S71779 glycine-rich RNA-binding pr... 44 3e-04
AL371197 homologue to GP|6273331|gb| glycine-rich RNA binding pr... 44 3e-04
TC89001 similar to GP|5726567|gb|AAD48471.1| glycine-rich RNA-bi... 44 4e-04
BG453645 44 4e-04
AW573600 similar to PIR|T01932|T01 RNA binding protein homolog -... 43 5e-04
TC76341 similar to GP|7528270|gb|AAF63202.1| poly(A)-binding pro... 43 5e-04
>TC87209 similar to GP|9663767|emb|CAC01237.1 RNA Binding Protein 45
{Nicotiana plumbaginifolia}, partial (69%)
Length = 1504
Score = 58.9 bits (141), Expect = 9e-09
Identities = 49/186 (26%), Positives = 78/186 (41%), Gaps = 1/186 (0%)
Frame = +3
Query: 8 PATIAWNKRHNTSAQSTKSRANKWSGLGNNRRADGIHRRIGKSLFVDGLTDQTTHLQVKN 67
P I N Q++K+ G N ++FV L T +K
Sbjct: 750 PMRIGPASNKNLGTQTSKASYQNPQGGAQNENDPN-----NTTIFVGNLDPNVTDEHLKQ 914
Query: 68 AFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMRRMNGSILNGATINVSLARL 127
F +G ++ V + + KR GFV+F+ S AE A+R +NG++L G + +S R
Sbjct: 915 VFTQYGELVHVKIPSGKR------CGFVQFADRSSAEEALRVLNGTLLGGQNVRLSWGRS 1076
Query: 128 PQDQHTRPRPTDNQWKGVSEW-GEHSKPNKGNRRSARKEWIPLKRNSQSDYPLNYDTLFL 186
P ++ T+ P NQW G S + G ++ +G A N YP Y +
Sbjct: 1077PANKQTQQDP--NQWNGSSSYFGGYA---QGYENYAYAPPAGQDPNMYGSYPAGYASYQP 1241
Query: 187 PSIEEQ 192
P ++Q
Sbjct: 1242PQQQQQ 1259
Score = 29.3 bits (64), Expect = 7.8
Identities = 19/76 (25%), Positives = 34/76 (44%)
Frame = +3
Query: 49 KSLFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMR 108
K+L++ L + N F+ G + V V K+ + +GF+ F + AE ++
Sbjct: 258 KTLWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFISRAGAERVLQ 437
Query: 109 RMNGSILNGATINVSL 124
NG+I+ N L
Sbjct: 438 TFNGTIMPNGGQNFRL 485
>TC84335 weakly similar to GP|21741678|emb|CAD40580. oj000126_13.2 {Oryza
sativa}, partial (39%)
Length = 678
Score = 53.1 bits (126), Expect = 5e-07
Identities = 28/80 (35%), Positives = 44/80 (55%)
Frame = +2
Query: 45 RRIGKSLFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAE 104
RRI +FV GL TT ++ AF+ +G ++ + K K+R FG+V F+ + +A
Sbjct: 188 RRITSKIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEAR 367
Query: 105 VAMRRMNGSILNGATINVSL 124
A MNG IL+G + V +
Sbjct: 368 KAQIGMNGKILHGRVLYVDM 427
>TC90607 similar to GP|20466724|gb|AAM20679.1 unknown protein {Arabidopsis
thaliana}, partial (49%)
Length = 1143
Score = 52.0 bits (123), Expect = 1e-06
Identities = 30/91 (32%), Positives = 48/91 (51%), Gaps = 4/91 (4%)
Frame = +1
Query: 49 KSLFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMR 108
K LFV GL+ T+ ++ AF FG ++ V V K +R + F+ ++ + A A++
Sbjct: 577 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASAALK 756
Query: 109 RMNGSILNGATINVSLARLPQDQ----HTRP 135
MNG I+NG I V +A+ + H RP
Sbjct: 757 EMNGKIINGWMIVVDVAKTTPPRYNKGHARP 849
>TC76334 similar to GP|9663767|emb|CAC01237.1 RNA Binding Protein 45
{Nicotiana plumbaginifolia}, partial (68%)
Length = 1579
Score = 51.6 bits (122), Expect = 1e-06
Identities = 29/89 (32%), Positives = 48/89 (53%)
Frame = +1
Query: 50 SLFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMRR 109
++FV L T ++ F +G ++ V + + KR GFV+FS S AE A+R
Sbjct: 835 TIFVGNLDPNVTDDHLRQVFTQYGELVHVKIPSGKR------CGFVQFSDRSCAEEAIRV 996
Query: 110 MNGSILNGATINVSLARLPQDQHTRPRPT 138
+NG++L G + +S R P ++ T+ PT
Sbjct: 997 LNGTLLGGQNVRLSWGRTPSNKQTQQDPT 1083
Score = 29.6 bits (65), Expect = 5.9
Identities = 30/118 (25%), Positives = 50/118 (41%), Gaps = 2/118 (1%)
Frame = +1
Query: 32 SGLGNNRRADGIHRRIGKSLFVDGLTDQTTHLQVKNAF-ASFGRILGVFVQNVKRKQRRS 90
+G ++R+ DG I FV L T ++ F A + + G V + R
Sbjct: 475 AGERSSRQDDGPDHTI----FVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSK 642
Query: 91 KFGFVRFSFDSDAEVAMRRMNGSILNGATINVSLARLPQD-QHTRPRPTDNQWKGVSE 147
+GFVRF+ + + AM M G + + + + A T+P+ + N G SE
Sbjct: 643 GYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNKNPAATTQPKASYNPSGGQSE 816
>TC89523 weakly similar to GP|17065276|gb|AAL32792.1 Unknown protein
{Arabidopsis thaliana}, partial (64%)
Length = 729
Score = 51.6 bits (122), Expect = 1e-06
Identities = 27/82 (32%), Positives = 45/82 (53%)
Frame = +3
Query: 45 RRIGKSLFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAE 104
R I LFV GL+ TT + +AF+++G+++ V + ++ +GFV F+ +AE
Sbjct: 114 RAIAFKLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAE 293
Query: 105 VAMRRMNGSILNGATINVSLAR 126
A+ MN LNG + V A+
Sbjct: 294 KAITEMNEKALNGRVVFVDYAK 359
>TC76886 similar to PIR|T01932|T01932 RNA binding protein homolog - common
tobacco (fragment), partial (67%)
Length = 1896
Score = 50.1 bits (118), Expect = 4e-06
Identities = 57/219 (26%), Positives = 91/219 (41%), Gaps = 5/219 (2%)
Frame = +2
Query: 32 SGLGNNRRADGIHRRIGKSLFVDGLTDQTTHLQVKNAFAS-FGRILGVFVQNVKRKQRRS 90
+G G RR+ + S+FV L T ++ FAS F I G V R
Sbjct: 797 AGGGGERRSSEATSDL--SVFVGDLAIDVTDAMLQETFASKFSSIKGAKVVIDSNTGRSK 970
Query: 91 KFGFVRFSFDSDAEVAMRRMNGSILNGATINVSLARLPQDQHTRPRPTDNQWKGVSEWGE 150
+GFVRF +S+ AM MNG + + V +A P+ + P+ +Q ++ G
Sbjct: 971 GYGFVRFGDESERTRAMTEMNGVYCSSRPMRVGVA-TPKKTYGNPQQYSSQAVVLAGGGG 1147
Query: 151 HSKPNKGNRRSARKEWIPLKRNSQSDYPLNYDTLFLPSIEEQDRNPQETQDFLVSNGVHK 210
HS + + SQS+ N T+F+ ++ + Q FL V
Sbjct: 1148HSNG-------------AMAQGSQSEGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVIS 1288
Query: 211 AKIIPMGAMEVALEFDEVADMKHFIDTA----GSALGKK 245
K IP+G F ++AD K+ + G+ +GK+
Sbjct: 1289VK-IPVGK---GCGFVQLADRKNAEEAIQGLNGTVIGKQ 1393
Score = 43.1 bits (100), Expect = 5e-04
Identities = 28/108 (25%), Positives = 52/108 (47%)
Frame = +2
Query: 50 SLFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMRR 109
++FV GL + ++ F FG ++ V + K GFV+ + +AE A++
Sbjct: 1205 TIFVGGLDSDISDEDLRQPFLQFGDVISVKIPVGKG------CGFVQLADRKNAEEAIQG 1366
Query: 110 MNGSILNGATINVSLARLPQDQHTRPRPTDNQWKGVSEWGEHSKPNKG 157
+NG+++ T+ +S R P ++H R D+ G +G H + G
Sbjct: 1367 LNGTVIGKQTVRLSWGRSPGNKHWR---NDSNGYGGHGYGGHGYGSNG 1501
>TC79394 weakly similar to PIR|T49019|T49019 probable RNA binding protein -
Arabidopsis thaliana, partial (74%)
Length = 1909
Score = 49.3 bits (116), Expect = 7e-06
Identities = 27/83 (32%), Positives = 44/83 (52%)
Frame = +2
Query: 49 KSLFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMR 108
K+++V L + T ++K F G+I V + K Q +S++GFV F+ S A A++
Sbjct: 953 KAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALK 1132
Query: 109 RMNGSILNGATINVSLARLPQDQ 131
+NG T+ SLA+ DQ
Sbjct: 1133 NTEKYEINGQTLECSLAKPQADQ 1201
>TC80442 similar to PIR|F84793|F84793 probable RNA-binding protein
[imported] - Arabidopsis thaliana, partial (64%)
Length = 894
Score = 47.4 bits (111), Expect = 3e-05
Identities = 32/93 (34%), Positives = 45/93 (47%), Gaps = 5/93 (5%)
Frame = +1
Query: 51 LFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMRRM 110
LF+ GL+ TT ++ AF+ FG++L V + R F FV +S +AE A M
Sbjct: 295 LFISGLSRLTTDEKLTEAFSPFGQLLEAKVITDRGSGRSKGFAFVSYSTIEEAEKAREGM 474
Query: 111 NGSILNGATINVSLA-----RLPQDQHTRPRPT 138
N L+G I V A R PQ ++P T
Sbjct: 475 NAKFLDGWVIFVDPAKPREPRPPQQSQSQPSQT 573
>TC80819 weakly similar to GP|10140689|gb|AAG13524.1 putative non-LTR
retroelement reverse transcriptase {Oryza sativa
(japonica cultivar-group)}, partial (2%)
Length = 1262
Score = 37.7 bits (86), Expect(2) = 5e-05
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 744 KTSLFQVSQQLMECNIAVKASLIRRGIPIENGGLCDICGLI-GESESHLMLHCPKIWLLW 802
K SLF +L+ + K +L+ RG+ + C +CG + ES +HL LHC LW
Sbjct: 650 KVSLFV--WRLLRNRLPTKDNLVHRGVLLATNAAC-VCGCVDSESTTHLFLHCNVFCSLW 820
Query: 803 TTI 805
+ +
Sbjct: 821 SLV 829
Score = 28.1 bits (61), Expect(2) = 5e-05
Identities = 14/51 (27%), Positives = 21/51 (40%), Gaps = 11/51 (21%)
Frame = +1
Query: 846 FWSIWRARNDLVFNQKDFSADYIWDLHLIRVMWWIKS-----------WWK 885
FW IW+ RN+ +F + + D + W+KS WWK
Sbjct: 943 FWVIWKERNNRLFQNTVTAPFVLIDRIKLHSFLWLKSKQVGFAYSYLDWWK 1095
>BE942328 weakly similar to GP|21741678|emb oj000126_13.2 {Oryza sativa},
partial (34%)
Length = 548
Score = 46.6 bits (109), Expect = 5e-05
Identities = 24/70 (34%), Positives = 38/70 (54%)
Frame = +3
Query: 45 RRIGKSLFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAE 104
RRI +FV GL TT ++ AF+ +G ++ + K K+R FG+V F+ + +A
Sbjct: 102 RRITSKIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEAR 281
Query: 105 VAMRRMNGSI 114
A MNG +
Sbjct: 282 KAQIGMNGKV 311
>TC76331 similar to GP|7673355|gb|AAF66823.1| poly(A)-binding protein
{Nicotiana tabacum}, partial (97%)
Length = 2581
Score = 44.7 bits (104), Expect = 2e-04
Identities = 30/99 (30%), Positives = 47/99 (47%)
Frame = +3
Query: 48 GKSLFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAM 107
G +L+V L D ++K F+S+G I V R GFV FS +A A+
Sbjct: 1287 GANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGVSRGS-GFVAFSTPEEASRAL 1463
Query: 108 RRMNGSILNGATINVSLARLPQDQHTRPRPTDNQWKGVS 146
MNG ++ + V+LA+ +D+ R + Q + VS
Sbjct: 1464 LEMNGKMVASKPLYVTLAQRKEDRRARLQAQFAQMRPVS 1580
Score = 40.4 bits (93), Expect = 0.003
Identities = 22/73 (30%), Positives = 38/73 (51%)
Frame = +3
Query: 50 SLFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMRR 109
++F+ L H + + F+SFG IL V V + +GFV+F + A+ A+ +
Sbjct: 711 NIFIKNLDKAIDHKALHDTFSSFGNILSCKVA-VDGSGQSKGYGFVQFDTEEAAQKAIEK 887
Query: 110 MNGSILNGATINV 122
+NG +LN + V
Sbjct: 888 LNGMLLNDKQVYV 926
Score = 37.7 bits (86), Expect = 0.022
Identities = 23/64 (35%), Positives = 34/64 (52%), Gaps = 1/64 (1%)
Frame = +3
Query: 50 SLFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSK-FGFVRFSFDSDAEVAMR 108
++FV L++ TT ++K F FG I V ++ +SK FGFV F DA A+
Sbjct: 984 NVFVKNLSESTTDDELKKTFGEFGTITSAVV--MRDGDGKSKCFGFVNFESTDDAARAVE 1157
Query: 109 RMNG 112
+NG
Sbjct: 1158 ALNG 1169
>AW687209 weakly similar to GP|9757907|dbj| contains similarity to RNA
binding protein~gene_id:MMN10.9 {Arabidopsis thaliana},
partial (64%)
Length = 531
Score = 44.7 bits (104), Expect = 2e-04
Identities = 27/81 (33%), Positives = 44/81 (53%)
Frame = +2
Query: 50 SLFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMRR 109
S GL+ TT Q+++ F+ FG + + + QR FGFV + + +AE A +
Sbjct: 191 SFHFPGLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKARKA 370
Query: 110 MNGSILNGATINVSLARLPQD 130
+NG I++G I V A+ P+D
Sbjct: 371 LNGRIVDGRLIFVEHAK-PKD 430
>TC90571 similar to GP|15594035|emb|CAC69852. nucleic acid binding protein
{Nicotiana tabacum}, partial (26%)
Length = 871
Score = 44.7 bits (104), Expect = 2e-04
Identities = 28/109 (25%), Positives = 52/109 (47%)
Frame = +2
Query: 20 SAQSTKSRANKWSGLGNNRRADGIHRRIGKSLFVDGLTDQTTHLQVKNAFASFGRILGVF 79
+A KS ++ G N + ++FV GL T +K F+ +G I V
Sbjct: 83 AATPRKSSGHQPGGQSNGTSSQSEADSTNTTIFVGGLDSNVTDEDLKQTFSQYGEIASVK 262
Query: 80 VQNVKRKQRRSKFGFVRFSFDSDAEVAMRRMNGSILNGATINVSLARLP 128
+ K GFV+F+ +++E A++++NG+++ T+ +S R P
Sbjct: 263 IPVGKG------CGFVQFANRNNSEEALQKLNGTMIGKQTVRLSWGRNP 391
>CA859848 similar to GP|12842203|dbj data source:MGD source key:MGI:1917118
evidence:ISS~peptidylprolyl isomerase E (cyclophilin
E)~, partial (30%)
Length = 387
Score = 44.3 bits (103), Expect = 2e-04
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +2
Query: 50 SLFVDGLTDQTTHLQVKNAFASFGRILGVFV--QNVKRKQRRSKFGFVRFSFDSDAEVAM 107
+++V GL DQ + AF FG I+ + + Q R FGF+ F +DA+ A+
Sbjct: 44 TIYVGGLDDQVNEKILHAAFVPFGDIVEIQIPPDPASHNQHRG-FGFIEFEEAADAQEAI 220
Query: 108 RRMNGSILNGATINVSLAR 126
MN S L G I V+LAR
Sbjct: 221 DNMNLSELYGKVIKVNLAR 277
>TC76556 similar to PIR|S71779|S71779 glycine-rich RNA-binding protein GRP1
- wheat, partial (95%)
Length = 754
Score = 43.9 bits (102), Expect = 3e-04
Identities = 25/75 (33%), Positives = 39/75 (51%)
Frame = +2
Query: 52 FVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMRRMN 111
FV GL T + ++ AF+ +G I+ + N + R FGFV F+ + A+ MN
Sbjct: 110 FVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEAMN 289
Query: 112 GSILNGATINVSLAR 126
G L+G I V+ A+
Sbjct: 290 GQDLDGRNITVNQAQ 334
>AL371197 homologue to GP|6273331|gb| glycine-rich RNA binding protein
{Medicago sativa}, complete
Length = 437
Score = 43.9 bits (102), Expect = 3e-04
Identities = 25/75 (33%), Positives = 39/75 (51%)
Frame = +1
Query: 52 FVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMRRMN 111
FV GL T + ++ AF+ +G I+ + N + R FGFV F+ + A+ MN
Sbjct: 67 FVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEAMN 246
Query: 112 GSILNGATINVSLAR 126
G L+G I V+ A+
Sbjct: 247 GQDLDGRNITVNQAQ 291
>TC89001 similar to GP|5726567|gb|AAD48471.1| glycine-rich RNA-binding
protein {Glycine max}, partial (90%)
Length = 488
Score = 43.5 bits (101), Expect = 4e-04
Identities = 26/75 (34%), Positives = 37/75 (48%)
Frame = +3
Query: 52 FVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMRRMN 111
FV GL T ++ AF+ FG I V N + R FGFV F+ + A+ MN
Sbjct: 60 FVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEEMN 239
Query: 112 GSILNGATINVSLAR 126
G ++G I V+ A+
Sbjct: 240 GQDIDGRNITVNEAQ 284
>BG453645
Length = 622
Score = 43.5 bits (101), Expect = 4e-04
Identities = 28/115 (24%), Positives = 53/115 (45%), Gaps = 3/115 (2%)
Frame = +3
Query: 770 IPIENGGLCDICGLIGESESHLMLHCPKIWLLWTTILAREEVYCCFPSSIQGLLLEWSSL 829
+P E C +C L E+ +H+ LHC L+W ++ +V P ++ WS
Sbjct: 9 LPPEVSSTCVLCNLKVETTTHIFLHCDVASLVWFRVMKWFDVNFLIPPNLFVHWECWSEG 188
Query: 830 RAISDPIM--WEIIPYAMFWSIWRARNDLVFNQKDFSA-DYIWDLHLIRVMWWIK 881
+ + W ++ + W +W RNDL+F + A D I ++ ++ W ++
Sbjct: 189 GSANRVTKGHW-LVWHTTIWVLWAKRNDLIFKGLNCVAEDVIEEIKVLS*RWMLE 350
>AW573600 similar to PIR|T01932|T01 RNA binding protein homolog - common
tobacco (fragment), partial (23%)
Length = 522
Score = 43.1 bits (100), Expect = 5e-04
Identities = 28/108 (25%), Positives = 52/108 (47%)
Frame = +3
Query: 50 SLFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMRR 109
++FV GL + ++ F FG ++ V + K GFV+ + +AE A++
Sbjct: 108 TIFVGGLDSDISDEDLRQPFLQFGDVISVKIPVGKG------CGFVQLADRKNAEEAIQG 269
Query: 110 MNGSILNGATINVSLARLPQDQHTRPRPTDNQWKGVSEWGEHSKPNKG 157
+NG+++ T+ +S R P ++H R D+ G +G H + G
Sbjct: 270 LNGTVIGKQTVRLSWGRSPGNKHWR---NDSNGYGGHGYGGHGYGSNG 404
>TC76341 similar to GP|7528270|gb|AAF63202.1| poly(A)-binding protein {Cucumis
sativus}, partial (90%)
Length = 2501
Score = 43.1 bits (100), Expect = 5e-04
Identities = 27/99 (27%), Positives = 48/99 (48%)
Frame = +3
Query: 48 GKSLFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAM 107
G +L++ L D T ++K F+ FG I + R GFV FS +A A+
Sbjct: 1140 GLNLYLKNLDDSITDEKLKEMFSEFGTITSYKIMRDPNGVSRGS-GFVAFSTPEEASRAL 1316
Query: 108 RRMNGSILNGATINVSLARLPQDQHTRPRPTDNQWKGVS 146
MNG ++ + V++A+ +D+ R + +Q + V+
Sbjct: 1317 GEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQMRPVA 1433
Score = 39.3 bits (90), Expect = 0.008
Identities = 21/82 (25%), Positives = 42/82 (50%)
Frame = +3
Query: 50 SLFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMRR 109
++F+ L H + + F+SFG+I+ + Q + +GFV+F + A+ A+ +
Sbjct: 561 NIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKG-YGFVQFEAEDSAQNAIDK 737
Query: 110 MNGSILNGATINVSLARLPQDQ 131
+NG ++N + V QD+
Sbjct: 738 LNGMLINDKQVFVGHFLRKQDR 803
Score = 34.7 bits (78), Expect = 0.18
Identities = 21/64 (32%), Positives = 34/64 (52%), Gaps = 1/64 (1%)
Frame = +3
Query: 50 SLFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSK-FGFVRFSFDSDAEVAMR 108
+++V L++ T +KN F ++G I + ++ RSK FGFV F DA A+
Sbjct: 834 NVYVKNLSESFTEDDLKNEFGAYGTITSAVL--MRDADGRSKCFGFVNFENAEDAAKAVE 1007
Query: 109 RMNG 112
+NG
Sbjct: 1008ALNG 1019
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.319 0.134 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,088,453
Number of Sequences: 36976
Number of extensions: 521446
Number of successful extensions: 3392
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 3141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3373
length of query: 989
length of database: 9,014,727
effective HSP length: 106
effective length of query: 883
effective length of database: 5,095,271
effective search space: 4499124293
effective search space used: 4499124293
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Lotus: description of TM0404.10