BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0403.9
(139 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC85268 similar to GP|21491|emb|CAA27989.1|| ST-LS1 protein (AA ... 229 3e-61
BQ151110 similar to GP|21491|emb|C ST-LS1 protein (AA 1-138) {So... 227 1e-60
BQ148582 similar to GP|21491|emb|C ST-LS1 protein (AA 1-138) {So... 227 1e-60
BG457528 similar to GP|21491|emb|C ST-LS1 protein (AA 1-138) {So... 227 1e-60
BQ142391 similar to GP|21491|emb|C ST-LS1 protein (AA 1-138) {So... 227 1e-60
BQ150595 similar to GP|21491|emb|C ST-LS1 protein (AA 1-138) {So... 227 1e-60
BQ159089 similar to GP|21491|emb|C ST-LS1 protein (AA 1-138) {So... 226 3e-60
BQ158726 similar to GP|21491|emb|C ST-LS1 protein (AA 1-138) {So... 225 4e-60
BQ151212 similar to GP|21491|emb|C ST-LS1 protein (AA 1-138) {So... 216 2e-57
BQ150949 similar to GP|21491|emb|C ST-LS1 protein (AA 1-138) {So... 216 2e-57
BQ158063 similar to GP|21491|emb|C ST-LS1 protein (AA 1-138) {So... 216 2e-57
BQ157973 similar to GP|21491|emb|C ST-LS1 protein (AA 1-138) {So... 214 7e-57
BF006266 similar to GP|21491|emb|C ST-LS1 protein (AA 1-138) {So... 209 4e-55
BE316505 similar to GP|21491|emb|C ST-LS1 protein (AA 1-138) {So... 208 6e-55
AW683612 similar to GP|21491|emb|CA ST-LS1 protein (AA 1-138) {S... 206 2e-54
BE316359 similar to GP|21491|emb|C ST-LS1 protein (AA 1-138) {So... 197 1e-51
AL386625 similar to GP|21491|emb|C ST-LS1 protein (AA 1-138) {So... 189 2e-49
BQ151264 similar to GP|21491|emb|C ST-LS1 protein (AA 1-138) {So... 189 2e-49
AW981255 similar to SP|Q40519|PSBR Photosystem II 10 kDa polypep... 186 2e-48
BE316757 similar to GP|21491|emb|C ST-LS1 protein (AA 1-138) {So... 180 2e-46
>TC85268 similar to GP|21491|emb|CAA27989.1|| ST-LS1 protein (AA 1-138)
{Solanum tuberosum}, partial (87%)
Length = 716
Score = 229 bits (584), Expect = 3e-61
Identities = 117/139 (84%), Positives = 124/139 (89%)
Frame = +1
Query: 1 MASSVMASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNL 60
MASSVMASVSLKP F +EKSSVRGLP+LSR F+VVASG KKIKTDTPYGTGGGM L
Sbjct: 64 MASSVMASVSLKPTPFRVEKSSVRGLPALSRP---FKVVASGVKKIKTDTPYGTGGGMAL 234
Query: 61 RNGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTL 120
+G DASGRK +GKGVYQ+VDKYGANVDGYSPIY+ KDWSPTGDVY GGTTGLAIWAVTL
Sbjct: 235 PDGKDASGRKQKGKGVYQFVDKYGANVDGYSPIYEPKDWSPTGDVYTGGTTGLAIWAVTL 414
Query: 121 LGLLAGGALLVYNTSALSQ 139
GLLAGGALLVYNTSALSQ
Sbjct: 415 AGLLAGGALLVYNTSALSQ 471
>BQ151110 similar to GP|21491|emb|C ST-LS1 protein (AA 1-138) {Solanum
tuberosum}, partial (77%)
Length = 723
Score = 227 bits (579), Expect = 1e-60
Identities = 116/138 (84%), Positives = 123/138 (89%)
Frame = +1
Query: 2 ASSVMASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNLR 61
ASSVMASVSLKP F +EKSSVRGLP+LSR F+VVASG KKIKTDTPYGTGGGM L
Sbjct: 10 ASSVMASVSLKPTPFRVEKSSVRGLPALSRP---FKVVASGVKKIKTDTPYGTGGGMALP 180
Query: 62 NGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTLL 121
+G DASGRK +GKGVYQ+VDKYGANVDGYSPIY+ KDWSPTGDVY GGTTGLAIWAVTL
Sbjct: 181 DGKDASGRKQKGKGVYQFVDKYGANVDGYSPIYEPKDWSPTGDVYTGGTTGLAIWAVTLA 360
Query: 122 GLLAGGALLVYNTSALSQ 139
GLLAGGALLVYNTSALSQ
Sbjct: 361 GLLAGGALLVYNTSALSQ 414
>BQ148582 similar to GP|21491|emb|C ST-LS1 protein (AA 1-138) {Solanum
tuberosum}, partial (77%)
Length = 528
Score = 227 bits (579), Expect = 1e-60
Identities = 116/138 (84%), Positives = 123/138 (89%)
Frame = +2
Query: 2 ASSVMASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNLR 61
ASSVMASVSLKP F +EKSSVRGLP+LSR F+VVASG KKIKTDTPYGTGGGM L
Sbjct: 2 ASSVMASVSLKPTPFRVEKSSVRGLPALSRP---FKVVASGVKKIKTDTPYGTGGGMALP 172
Query: 62 NGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTLL 121
+G DASGRK +GKGVYQ+VDKYGANVDGYSPIY+ KDWSPTGDVY GGTTGLAIWAVTL
Sbjct: 173 DGKDASGRKQKGKGVYQFVDKYGANVDGYSPIYEPKDWSPTGDVYTGGTTGLAIWAVTLA 352
Query: 122 GLLAGGALLVYNTSALSQ 139
GLLAGGALLVYNTSALSQ
Sbjct: 353 GLLAGGALLVYNTSALSQ 406
>BG457528 similar to GP|21491|emb|C ST-LS1 protein (AA 1-138) {Solanum
tuberosum}, partial (77%)
Length = 527
Score = 227 bits (579), Expect = 1e-60
Identities = 116/138 (84%), Positives = 123/138 (89%)
Frame = +1
Query: 2 ASSVMASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNLR 61
ASSVMASVSLKP F +EKSSVRGLP+LSR F+VVASG KKIKTDTPYGTGGGM L
Sbjct: 1 ASSVMASVSLKPTPFRVEKSSVRGLPALSRP---FKVVASGVKKIKTDTPYGTGGGMALP 171
Query: 62 NGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTLL 121
+G DASGRK +GKGVYQ+VDKYGANVDGYSPIY+ KDWSPTGDVY GGTTGLAIWAVTL
Sbjct: 172 DGKDASGRKQKGKGVYQFVDKYGANVDGYSPIYEPKDWSPTGDVYTGGTTGLAIWAVTLA 351
Query: 122 GLLAGGALLVYNTSALSQ 139
GLLAGGALLVYNTSALSQ
Sbjct: 352 GLLAGGALLVYNTSALSQ 405
>BQ142391 similar to GP|21491|emb|C ST-LS1 protein (AA 1-138) {Solanum
tuberosum}, partial (77%)
Length = 526
Score = 227 bits (579), Expect = 1e-60
Identities = 116/138 (84%), Positives = 123/138 (89%)
Frame = +1
Query: 2 ASSVMASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNLR 61
ASSVMASVSLKP F +EKSSVRGLP+LSR F+VVASG KKIKTDTPYGTGGGM L
Sbjct: 10 ASSVMASVSLKPTPFRVEKSSVRGLPALSRP---FKVVASGVKKIKTDTPYGTGGGMALP 180
Query: 62 NGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTLL 121
+G DASGRK +GKGVYQ+VDKYGANVDGYSPIY+ KDWSPTGDVY GGTTGLAIWAVTL
Sbjct: 181 DGKDASGRKQKGKGVYQFVDKYGANVDGYSPIYEPKDWSPTGDVYTGGTTGLAIWAVTLA 360
Query: 122 GLLAGGALLVYNTSALSQ 139
GLLAGGALLVYNTSALSQ
Sbjct: 361 GLLAGGALLVYNTSALSQ 414
>BQ150595 similar to GP|21491|emb|C ST-LS1 protein (AA 1-138) {Solanum
tuberosum}, partial (86%)
Length = 710
Score = 227 bits (579), Expect = 1e-60
Identities = 116/138 (84%), Positives = 123/138 (89%)
Frame = +3
Query: 2 ASSVMASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNLR 61
ASSVMASVSLKP F +EKSSVRGLP+LSR F+VVASG KKIKTDTPYGTGGGM L
Sbjct: 9 ASSVMASVSLKPTPFRVEKSSVRGLPALSRP---FKVVASGVKKIKTDTPYGTGGGMALP 179
Query: 62 NGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTLL 121
+G DASGRK +GKGVYQ+VDKYGANVDGYSPIY+ KDWSPTGDVY GGTTGLAIWAVTL
Sbjct: 180 DGKDASGRKQKGKGVYQFVDKYGANVDGYSPIYEPKDWSPTGDVYTGGTTGLAIWAVTLA 359
Query: 122 GLLAGGALLVYNTSALSQ 139
GLLAGGALLVYNTSALSQ
Sbjct: 360 GLLAGGALLVYNTSALSQ 413
>BQ159089 similar to GP|21491|emb|C ST-LS1 protein (AA 1-138) {Solanum
tuberosum}, partial (77%)
Length = 666
Score = 226 bits (575), Expect = 3e-60
Identities = 115/137 (83%), Positives = 122/137 (88%)
Frame = +3
Query: 3 SSVMASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNLRN 62
SSVMASVSLKP F +EKSSVRGLP+LSR F+VVASG KKIKTDTPYGTGGGM L +
Sbjct: 6 SSVMASVSLKPTPFRVEKSSVRGLPALSRP---FKVVASGVKKIKTDTPYGTGGGMALPD 176
Query: 63 GVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTLLG 122
G DASGRK +GKGVYQ+VDKYGANVDGYSPIY+ KDWSPTGDVY GGTTGLAIWAVTL G
Sbjct: 177 GKDASGRKQKGKGVYQFVDKYGANVDGYSPIYEPKDWSPTGDVYTGGTTGLAIWAVTLAG 356
Query: 123 LLAGGALLVYNTSALSQ 139
LLAGGALLVYNTSALSQ
Sbjct: 357 LLAGGALLVYNTSALSQ 407
>BQ158726 similar to GP|21491|emb|C ST-LS1 protein (AA 1-138) {Solanum
tuberosum}, partial (77%)
Length = 689
Score = 225 bits (574), Expect = 4e-60
Identities = 115/138 (83%), Positives = 122/138 (88%)
Frame = +1
Query: 2 ASSVMASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNLR 61
ASS MASVSLKP F +EKSSVRGLP+LSR F+VVASG KKIKTDTPYGTGGGM L
Sbjct: 13 ASSXMASVSLKPTPFRVEKSSVRGLPALSRP---FKVVASGVKKIKTDTPYGTGGGMALP 183
Query: 62 NGVDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTLL 121
+G DASGRK +GKGVYQ+VDKYGANVDGYSPIY+ KDWSPTGDVY GGTTGLAIWAVTL
Sbjct: 184 DGKDASGRKQKGKGVYQFVDKYGANVDGYSPIYEPKDWSPTGDVYTGGTTGLAIWAVTLA 363
Query: 122 GLLAGGALLVYNTSALSQ 139
GLLAGGALLVYNTSALSQ
Sbjct: 364 GLLAGGALLVYNTSALSQ 417
>BQ151212 similar to GP|21491|emb|C ST-LS1 protein (AA 1-138) {Solanum
tuberosum}, partial (77%)
Length = 734
Score = 216 bits (551), Expect = 2e-57
Identities = 109/132 (82%), Positives = 117/132 (88%)
Frame = +3
Query: 8 SVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNLRNGVDAS 67
+VSLKP F +EKSSVRGLP+LSR F+VVASG KKIKTDTPYGTGGGM L +G DAS
Sbjct: 15 AVSLKPTPFRVEKSSVRGLPALSRP---FKVVASGVKKIKTDTPYGTGGGMALPDGKDAS 185
Query: 68 GRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTLLGLLAGG 127
GRK +GKGVYQ+VDKYGANVDGYSPIY+ KDWSPTGDVY GGTTGLAIWAVTL GLLAGG
Sbjct: 186 GRKQKGKGVYQFVDKYGANVDGYSPIYEPKDWSPTGDVYTGGTTGLAIWAVTLAGLLAGG 365
Query: 128 ALLVYNTSALSQ 139
ALLVYNTSALSQ
Sbjct: 366 ALLVYNTSALSQ 401
>BQ150949 similar to GP|21491|emb|C ST-LS1 protein (AA 1-138) {Solanum
tuberosum}, partial (77%)
Length = 689
Score = 216 bits (550), Expect = 2e-57
Identities = 109/131 (83%), Positives = 116/131 (88%)
Frame = +3
Query: 9 VSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNLRNGVDASG 68
VSLKP F +EKSSVRGLP+LSR F+VVASG KKIKTDTPYGTGGGM L +G DASG
Sbjct: 3 VSLKPTPFRVEKSSVRGLPALSRP---FKVVASGVKKIKTDTPYGTGGGMALPDGKDASG 173
Query: 69 RKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTLLGLLAGGA 128
RK +GKGVYQ+VDKYGANVDGYSPIY+ KDWSPTGDVY GGTTGLAIWAVTL GLLAGGA
Sbjct: 174 RKQKGKGVYQFVDKYGANVDGYSPIYEPKDWSPTGDVYTGGTTGLAIWAVTLAGLLAGGA 353
Query: 129 LLVYNTSALSQ 139
LLVYNTSALSQ
Sbjct: 354 LLVYNTSALSQ 386
>BQ158063 similar to GP|21491|emb|C ST-LS1 protein (AA 1-138) {Solanum
tuberosum}, partial (77%)
Length = 717
Score = 216 bits (550), Expect = 2e-57
Identities = 109/131 (83%), Positives = 116/131 (88%)
Frame = +2
Query: 9 VSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNLRNGVDASG 68
VSLKP F +EKSSVRGLP+LSR F+VVASG KKIKTDTPYGTGGGM L +G DASG
Sbjct: 8 VSLKPTPFRVEKSSVRGLPALSRP---FKVVASGVKKIKTDTPYGTGGGMALPDGKDASG 178
Query: 69 RKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTLLGLLAGGA 128
RK +GKGVYQ+VDKYGANVDGYSPIY+ KDWSPTGDVY GGTTGLAIWAVTL GLLAGGA
Sbjct: 179 RKQKGKGVYQFVDKYGANVDGYSPIYEPKDWSPTGDVYTGGTTGLAIWAVTLAGLLAGGA 358
Query: 129 LLVYNTSALSQ 139
LLVYNTSALSQ
Sbjct: 359 LLVYNTSALSQ 391
>BQ157973 similar to GP|21491|emb|C ST-LS1 protein (AA 1-138) {Solanum
tuberosum}, partial (77%)
Length = 704
Score = 214 bits (546), Expect = 7e-57
Identities = 108/130 (83%), Positives = 115/130 (88%)
Frame = +3
Query: 10 SLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNLRNGVDASGR 69
SLKP F +EKSSVRGLP+LSR F+VVASG KKIKTDTPYGTGGGM L +G DASGR
Sbjct: 6 SLKPTPFRVEKSSVRGLPALSRP---FKVVASGVKKIKTDTPYGTGGGMALPDGKDASGR 176
Query: 70 KPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTLLGLLAGGAL 129
K +GKGVYQ+VDKYGANVDGYSPIY+ KDWSPTGDVY GGTTGLAIWAVTL GLLAGGAL
Sbjct: 177 KQKGKGVYQFVDKYGANVDGYSPIYEPKDWSPTGDVYTGGTTGLAIWAVTLAGLLAGGAL 356
Query: 130 LVYNTSALSQ 139
LVYNTSALSQ
Sbjct: 357 LVYNTSALSQ 386
>BF006266 similar to GP|21491|emb|C ST-LS1 protein (AA 1-138) {Solanum
tuberosum}, partial (75%)
Length = 472
Score = 209 bits (531), Expect = 4e-55
Identities = 106/131 (80%), Positives = 113/131 (85%)
Frame = +2
Query: 9 VSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNLRNGVDASG 68
VSLKP F + K SVRGLP+LSR F+VVASG KIKTDTPYGTGGGM L +G DASG
Sbjct: 2 VSLKPTPFRVVKFSVRGLPALSRR---FKVVASGVTKIKTDTPYGTGGGMALPDGKDASG 172
Query: 69 RKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTLLGLLAGGA 128
RK +GKGVYQ+VDKYGANVDGYSPIY+ KDWSPTGDVY GGTTGLAIWAVTL GLLAGGA
Sbjct: 173 RKQKGKGVYQFVDKYGANVDGYSPIYEPKDWSPTGDVYTGGTTGLAIWAVTLAGLLAGGA 352
Query: 129 LLVYNTSALSQ 139
LLVYNTSALSQ
Sbjct: 353 LLVYNTSALSQ 385
>BE316505 similar to GP|21491|emb|C ST-LS1 protein (AA 1-138) {Solanum
tuberosum}, partial (73%)
Length = 370
Score = 208 bits (529), Expect = 6e-55
Identities = 104/126 (82%), Positives = 111/126 (87%)
Frame = +1
Query: 9 VSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNLRNGVDASG 68
VSLKP F +EKSSVRGLP+LSR F+VVASG KKIKTDTPYGTGGGM L +G DASG
Sbjct: 1 VSLKPTPFRVEKSSVRGLPALSRP---FKVVASGVKKIKTDTPYGTGGGMALPDGKDASG 171
Query: 69 RKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTLLGLLAGGA 128
RK +GKGVYQ+VDKYGANVDGYSPIY+ KDWSPTGDVY GGTTGLAIWAVTL GLLAGGA
Sbjct: 172 RKQKGKGVYQFVDKYGANVDGYSPIYEPKDWSPTGDVYTGGTTGLAIWAVTLAGLLAGGA 351
Query: 129 LLVYNT 134
LLVYNT
Sbjct: 352 LLVYNT 369
>AW683612 similar to GP|21491|emb|CA ST-LS1 protein (AA 1-138) {Solanum
tuberosum}, partial (71%)
Length = 373
Score = 206 bits (524), Expect = 2e-54
Identities = 104/127 (81%), Positives = 111/127 (86%)
Frame = +2
Query: 4 SVMASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNLRNG 63
SVMASVSLKP F +EKSSVRGLP+LSR F+VVASG KKIKTDTPYGTGGGM L +G
Sbjct: 2 SVMASVSLKPTPFRVEKSSVRGLPALSRP---FKVVASGVKKIKTDTPYGTGGGMALPDG 172
Query: 64 VDASGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTLLGL 123
DASGRK +GKGVYQ+VDKYGANVDGYSPIY+ KDWSPTGDVY GGTTGLAIWAVTL GL
Sbjct: 173 KDASGRKQKGKGVYQFVDKYGANVDGYSPIYEPKDWSPTGDVYTGGTTGLAIWAVTLAGL 352
Query: 124 LAGGALL 130
L GGALL
Sbjct: 353 LTGGALL 373
>BE316359 similar to GP|21491|emb|C ST-LS1 protein (AA 1-138) {Solanum
tuberosum}, partial (72%)
Length = 366
Score = 197 bits (501), Expect = 1e-51
Identities = 98/123 (79%), Positives = 107/123 (86%)
Frame = +1
Query: 10 SLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNLRNGVDASGR 69
++KP F +EKSSVRGLP+LSR F+VVASG KKIKTDTPYGTGGGM L +G DASGR
Sbjct: 7 AVKPTPFRVEKSSVRGLPALSRP---FKVVASGVKKIKTDTPYGTGGGMALPDGKDASGR 177
Query: 70 KPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTLLGLLAGGAL 129
K +GKGVYQ+VDKYGANVDGYSPIY+ KDWSPTGDVY GGTTGLAIWAVTL GLLAGGAL
Sbjct: 178 KQKGKGVYQFVDKYGANVDGYSPIYEPKDWSPTGDVYTGGTTGLAIWAVTLAGLLAGGAL 357
Query: 130 LVY 132
L Y
Sbjct: 358 LGY 366
>AL386625 similar to GP|21491|emb|C ST-LS1 protein (AA 1-138) {Solanum
tuberosum}, partial (77%)
Length = 427
Score = 189 bits (481), Expect = 2e-49
Identities = 92/107 (85%), Positives = 97/107 (89%)
Frame = +3
Query: 33 SASFRVVASGGKKIKTDTPYGTGGGMNLRNGVDASGRKPRGKGVYQYVDKYGANVDGYSP 92
S F+VVASG KKIKTDTPYGTGGGM L +G DASGRK +GKGVYQ+VDKYGANVDGYSP
Sbjct: 3 SRPFKVVASGVKKIKTDTPYGTGGGMALPDGKDASGRKQKGKGVYQFVDKYGANVDGYSP 182
Query: 93 IYDTKDWSPTGDVYAGGTTGLAIWAVTLLGLLAGGALLVYNTSALSQ 139
IY+ KDWSPTGDVY GGTTGLAIWAVTL GLLAGGALLVYNTSALSQ
Sbjct: 183 IYEPKDWSPTGDVYTGGTTGLAIWAVTLAGLLAGGALLVYNTSALSQ 323
>BQ151264 similar to GP|21491|emb|C ST-LS1 protein (AA 1-138) {Solanum
tuberosum}, partial (77%)
Length = 581
Score = 189 bits (481), Expect = 2e-49
Identities = 92/107 (85%), Positives = 97/107 (89%)
Frame = +2
Query: 33 SASFRVVASGGKKIKTDTPYGTGGGMNLRNGVDASGRKPRGKGVYQYVDKYGANVDGYSP 92
S F+VVASG KKIKTDTPYGTGGGM L +G DASGRK +GKGVYQ+VDKYGANVDGYSP
Sbjct: 38 SRPFKVVASGVKKIKTDTPYGTGGGMALPDGKDASGRKQKGKGVYQFVDKYGANVDGYSP 217
Query: 93 IYDTKDWSPTGDVYAGGTTGLAIWAVTLLGLLAGGALLVYNTSALSQ 139
IY+ KDWSPTGDVY GGTTGLAIWAVTL GLLAGGALLVYNTSALSQ
Sbjct: 218 IYEPKDWSPTGDVYTGGTTGLAIWAVTLAGLLAGGALLVYNTSALSQ 358
>AW981255 similar to SP|Q40519|PSBR Photosystem II 10 kDa polypeptide
chloroplast precursor (PII10). [Common tobacco], partial
(73%)
Length = 433
Score = 186 bits (473), Expect = 2e-48
Identities = 92/112 (82%), Positives = 99/112 (88%), Gaps = 3/112 (2%)
Frame = +3
Query: 31 RSSASFR---VVASGGKKIKTDTPYGTGGGMNLRNGVDASGRKPRGKGVYQYVDKYGANV 87
R++ FR +VASG KKIKTDTPYGTGGGM L +G DASGRK +GKGVYQ+VDKYGANV
Sbjct: 15 RTTCPFRTLQIVASGVKKIKTDTPYGTGGGMALPDGKDASGRKQKGKGVYQFVDKYGANV 194
Query: 88 DGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTLLGLLAGGALLVYNTSALSQ 139
DGYSPIY+ KDWSPTGDVY GGTTGLAIWAVTL GLLAGGALLVYNTSALSQ
Sbjct: 195 DGYSPIYEPKDWSPTGDVYTGGTTGLAIWAVTLAGLLAGGALLVYNTSALSQ 350
>BE316757 similar to GP|21491|emb|C ST-LS1 protein (AA 1-138) {Solanum
tuberosum}, partial (72%)
Length = 366
Score = 180 bits (456), Expect = 2e-46
Identities = 89/111 (80%), Positives = 96/111 (86%)
Frame = +3
Query: 22 SVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNLRNGVDASGRKPRGKGVYQYVD 81
S +P+LSR F+VVASG KKIKTDTPYGTGGGM L +G DASGRK +GKGVYQ+VD
Sbjct: 42 SYEDVPALSRP---FKVVASGVKKIKTDTPYGTGGGMALPDGKDASGRKQKGKGVYQFVD 212
Query: 82 KYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTLLGLLAGGALLVY 132
KYGANVDGYSPIY+ KDWSPTGDVY GGTTGLAIWAVTL GLLAGGALLVY
Sbjct: 213 KYGANVDGYSPIYEPKDWSPTGDVYTGGTTGLAIWAVTLAGLLAGGALLVY 365
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.312 0.132 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,541,606
Number of Sequences: 36976
Number of extensions: 43101
Number of successful extensions: 257
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of query: 139
length of database: 9,014,727
effective HSP length: 86
effective length of query: 53
effective length of database: 5,834,791
effective search space: 309243923
effective search space used: 309243923
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)
Lotus: description of TM0403.9