TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0403.8
         (117 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BM814840 weakly similar to GP|15128241|db helicase-like protein ...    60  1e-10
CB892155 similar to PIR|D86481|D86 hypothetical protein AAG28292...    35  0.003
AW686924 similar to GP|22136670|gb| putative serine/threonine ki...    26  2.0
TC81880 similar to PIR|B85431|B85431 trichohyalin like protein [...    25  3.3
TC79169 type IIB calcium ATPase [Medicago truncatula]                  25  4.4
BG451333 similar to GP|16604434|gb| AT5g10910/T30N20_180 {Arabid...    25  5.7
TC77895 similar to GP|18087577|gb|AAL58919.1 AT4g00150/F6N15_20 ...    24  7.4
TC77174 similar to PIR|H84453|H84453 probable heat shock protein...    24  9.7

>BM814840 weakly similar to GP|15128241|db helicase-like protein {Oryza
           sativa (japonica cultivar-group)}, partial (6%)
          Length = 733

 Score = 60.1 bits (144), Expect = 1e-10
 Identities = 33/82 (40%), Positives = 48/82 (58%)
 Frame = +3

Query: 36  SSWFV**NPMRVTHLTQ*MIVATVFPGNKLGKTAYIPRISLTSSDSGLPFKFSRRQFLVT 95
           S W +    + +  L + +I A V  G   G+ +YIPR++L  S + +   F R QF + 
Sbjct: 12  SIWSLHGTRLIIVSLGKNVICARVIGGTHAGEVSYIPRMNLIPSGANVSITFERCQFPLV 191

Query: 96  LCFAMTINNNQGQSLSHVSLYL 117
           L FAMTIN +QGQ+L+ V LYL
Sbjct: 192 LSFAMTINKSQGQTLTSVGLYL 257


>CB892155 similar to PIR|D86481|D86 hypothetical protein AAG28292.1
           [imported] - Arabidopsis thaliana, partial (4%)
          Length = 572

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 15/24 (62%), Positives = 19/24 (78%)
 Frame = -2

Query: 94  VTLCFAMTINNNQGQSLSHVSLYL 117
           V + FAMTIN +QGQSL H+ +YL
Sbjct: 370 VEVYFAMTINKSQGQSLKHIGVYL 299


>AW686924 similar to GP|22136670|gb| putative serine/threonine kinase
           {Arabidopsis thaliana}, partial (4%)
          Length = 649

 Score = 26.2 bits (56), Expect = 2.0
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
 Frame = -2

Query: 83  LPFKFSRRQFLVTLCFAMT-------INNNQGQSLSHVSLY 116
           L FKF  RQF++  CF M+       ++N  G ++ H+  Y
Sbjct: 231 LLFKFLARQFVLLFCFHMSNFLIFSILDNLCG*AIEHIKNY 109


>TC81880 similar to PIR|B85431|B85431 trichohyalin like protein [imported] -
           Arabidopsis thaliana, partial (4%)
          Length = 1043

 Score = 25.4 bits (54), Expect = 3.3
 Identities = 13/42 (30%), Positives = 23/42 (53%)
 Frame = -3

Query: 74  ISLTSSDSGLPFKFSRRQFLVTLCFAMTINNNQGQSLSHVSL 115
           +SL+ S+S +  + S    L   CF+ +++   G  L+H SL
Sbjct: 522 LSLSLSNSSIFLRRSFSNSLSIFCFSSSLSTEAGVLLTHFSL 397


>TC79169 type IIB calcium ATPase [Medicago truncatula]
          Length = 3565

 Score = 25.0 bits (53), Expect = 4.4
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 68  TAYIPRISLTSSDSGLPFKFSRRQFLVTLCFAMTI 102
           T Y   IS+ S    LPF+F     L  LCF M +
Sbjct: 14  TRYKYNISILSIQQTLPFRFCALITLN*LCFVMVL 118


>BG451333 similar to GP|16604434|gb| AT5g10910/T30N20_180 {Arabidopsis
           thaliana}, partial (14%)
          Length = 536

 Score = 24.6 bits (52), Expect = 5.7
 Identities = 11/27 (40%), Positives = 18/27 (65%)
 Frame = -1

Query: 70  YIPRISLTSSDSGLPFKFSRRQFLVTL 96
           ++ RI++T S   LPF+FSR +  V +
Sbjct: 110 WMKRITVTIS*KXLPFRFSRPKLAVVV 30


>TC77895 similar to GP|18087577|gb|AAL58919.1 AT4g00150/F6N15_20
           {Arabidopsis thaliana}, partial (41%)
          Length = 2591

 Score = 24.3 bits (51), Expect = 7.4
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
 Frame = +1

Query: 74  ISLTSSDSGLPFK-----FSRRQFLVTLCFAMTINNNQ 106
           ISL  ++  + FK       + QFL+ +CF ++INNNQ
Sbjct: 826 ISLLVAEG*IKFKTLISVLHKFQFLMVVCF-ISINNNQ 936


>TC77174 similar to PIR|H84453|H84453 probable heat shock protein [imported]
           - Arabidopsis thaliana, partial (90%)
          Length = 2727

 Score = 23.9 bits (50), Expect = 9.7
 Identities = 13/31 (41%), Positives = 18/31 (57%)
 Frame = -1

Query: 79  SDSGLPFKFSRRQFLVTLCFAMTINNNQGQS 109
           S + +  KFS + FLVT+    T+NN   QS
Sbjct: 474 SITSITHKFSEKNFLVTI---QTVNNQIHQS 391


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.353    0.153    0.503 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,385,703
Number of Sequences: 36976
Number of extensions: 37867
Number of successful extensions: 418
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of query: 117
length of database: 9,014,727
effective HSP length: 93
effective length of query: 24
effective length of database: 5,575,959
effective search space: 133823016
effective search space used: 133823016
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 50 (23.9 bits)