BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0403.5
(44 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC77638 similar to GP|20161455|dbj|BAB90379. ankyrin-like protei... 74 1e-14
TC88058 similar to GP|21928175|gb|AAM78114.1 AT5g64030/MBM17_13 ... 69 5e-13
BF649960 similar to GP|21928175|gb| AT5g64030/MBM17_13 {Arabidop... 56 8e-10
TC87587 similar to GP|20259233|gb|AAM14332.1 putative ankyrin pr... 45 8e-06
TC81615 similar to GP|11994314|dbj|BAB02273. ankyrin-like protei... 44 1e-05
TC90244 similar to GP|15450749|gb|AAK96646.1 At2g39750/T5I7.5 {A... 42 4e-05
TC77957 similar to GP|15450900|gb|AAK96721.1 Unknown protein {Ar... 42 4e-05
TC79288 similar to GP|8052540|gb|AAF71804.1| F3F9.21 {Arabidopsi... 36 0.004
TC79561 similar to GP|14194107|gb|AAK56248.1 At1g77260/T14N5_19 ... 35 0.008
TC81952 similar to GP|6056205|gb|AAF02822.1| unknown protein {Ar... 34 0.014
TC85980 similar to GP|15294146|gb|AAK95250.1 AT4g18030/T6K21_210... 33 0.024
TC81234 similar to GP|6752888|gb|AAF27920.1| unknown {Malus x do... 33 0.024
TC86179 similar to GP|6752888|gb|AAF27920.1| unknown {Malus x do... 32 0.053
TC85777 similar to PIR|F86442|F86442 unknown protein [imported] ... 32 0.069
TC81625 similar to PIR|T02472|T02472 hypothetical protein At2g45... 31 0.12
TC88214 similar to GP|4325339|gb|AAD17339.1| F15P23.1 gene produ... 30 0.26
BG586030 similar to PIR|G86271|G86 protein F16A14.7 [imported] -... 30 0.26
AW776066 similar to GP|6752888|gb| unknown {Malus x domestica}, ... 29 0.34
TC80791 similar to GP|16648931|gb|AAL24317.1 Unknown protein {Ar... 27 1.3
TC82869 similar to PIR|F86442|F86442 unknown protein [imported] ... 26 2.9
>TC77638 similar to GP|20161455|dbj|BAB90379. ankyrin-like protein {Oryza
sativa (japonica cultivar-group)}, partial (62%)
Length = 2345
Score = 73.9 bits (180), Expect = 1e-14
Identities = 34/41 (82%), Positives = 36/41 (86%)
Frame = +1
Query: 1 GKLLLELNRVLRPGGFFVWSTTPVYHKLPEDVEICNGMSSL 41
GKLLLELNRVLRPGGFFVWS TP+Y KLPEDVEI N M +L
Sbjct: 1693 GKLLLELNRVLRPGGFFVWSATPIYQKLPEDVEIWNEMKAL 1815
>TC88058 similar to GP|21928175|gb|AAM78114.1 AT5g64030/MBM17_13
{Arabidopsis thaliana}, partial (39%)
Length = 1335
Score = 68.6 bits (166), Expect = 5e-13
Identities = 31/39 (79%), Positives = 34/39 (86%)
Frame = +2
Query: 3 LLLELNRVLRPGGFFVWSTTPVYHKLPEDVEICNGMSSL 41
LLLELNR+LRPGGFFVWS TP+Y KLPEDVEI N M +L
Sbjct: 2 LLLELNRLLRPGGFFVWSATPIYQKLPEDVEIWNEMKAL 118
>BF649960 similar to GP|21928175|gb| AT5g64030/MBM17_13 {Arabidopsis
thaliana}, partial (10%)
Length = 431
Score = 55.8 bits (133), Expect(2) = 8e-10
Identities = 24/27 (88%), Positives = 25/27 (91%)
Frame = +2
Query: 1 GKLLLELNRVLRPGGFFVWSTTPVYHK 27
GKLLLELNRVLRPGGFFVWS TP+Y K
Sbjct: 17 GKLLLELNRVLRPGGFFVWSATPIYQK 97
Score = 21.9 bits (45), Expect(2) = 8e-10
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3
Query: 28 LPEDVEICNG 37
LPEDVEI NG
Sbjct: 99 LPEDVEIWNG 128
>TC87587 similar to GP|20259233|gb|AAM14332.1 putative ankyrin protein
{Arabidopsis thaliana}, partial (70%)
Length = 1641
Score = 44.7 bits (104), Expect = 8e-06
Identities = 22/42 (52%), Positives = 30/42 (71%)
Frame = +3
Query: 1 GKLLLELNRVLRPGGFFVWSTTPVYHKLPEDVEICNGMSSLL 42
G LLLEL+RVLRPGG+F +S+ Y + ED+ I MS+L+
Sbjct: 360 GILLLELDRVLRPGGYFAYSSPEAYAQDEEDLRIWREMSALV 485
>TC81615 similar to GP|11994314|dbj|BAB02273. ankyrin-like protein
{Arabidopsis thaliana}, partial (69%)
Length = 1489
Score = 44.3 bits (103), Expect = 1e-05
Identities = 22/42 (52%), Positives = 30/42 (71%)
Frame = +3
Query: 1 GKLLLELNRVLRPGGFFVWSTTPVYHKLPEDVEICNGMSSLL 42
G LLLEL+R+LRPGG+FV+S+ Y + ED I MS+L+
Sbjct: 435 GILLLELDRILRPGGYFVYSSPEAYAQDEEDRRIWREMSALV 560
>TC90244 similar to GP|15450749|gb|AAK96646.1 At2g39750/T5I7.5 {Arabidopsis
thaliana}, partial (49%)
Length = 1319
Score = 42.4 bits (98), Expect = 4e-05
Identities = 22/46 (47%), Positives = 29/46 (62%), Gaps = 3/46 (6%)
Frame = +3
Query: 1 GKLLLELNRVLRPGGFFVWSTTPVY---HKLPEDVEICNGMSSLLC 43
G LLLE+NR+LR GG+FVW+ PVY L E E +++ LC
Sbjct: 795 GILLLEVNRMLRAGGYFVWAAQPVYKHEEALEEQWEEMLNLTTRLC 932
>TC77957 similar to GP|15450900|gb|AAK96721.1 Unknown protein {Arabidopsis
thaliana}, partial (61%)
Length = 1689
Score = 42.4 bits (98), Expect = 4e-05
Identities = 21/42 (50%), Positives = 29/42 (69%)
Frame = +2
Query: 1 GKLLLELNRVLRPGGFFVWSTTPVYHKLPEDVEICNGMSSLL 42
G LLLEL+RVLRPGG+F +S+ Y + E++ I MS L+
Sbjct: 1259 GILLLELDRVLRPGGYFAYSSPEAYAQDEENLRIWKEMSDLV 1384
>TC79288 similar to GP|8052540|gb|AAF71804.1| F3F9.21 {Arabidopsis thaliana},
partial (40%)
Length = 1665
Score = 35.8 bits (81), Expect = 0.004
Identities = 13/21 (61%), Positives = 19/21 (89%)
Frame = +3
Query: 1 GKLLLELNRVLRPGGFFVWST 21
G LL+E +R+LRPGG+FVW++
Sbjct: 1365 GNLLIEADRLLRPGGYFVWTS 1427
>TC79561 similar to GP|14194107|gb|AAK56248.1 At1g77260/T14N5_19 {Arabidopsis
thaliana}, partial (33%)
Length = 1092
Score = 34.7 bits (78), Expect = 0.008
Identities = 15/24 (62%), Positives = 18/24 (74%)
Frame = +2
Query: 1 GKLLLELNRVLRPGGFFVWSTTPV 24
G LLLE NR+LR G +FVW+ PV
Sbjct: 1019 GILLLEANRLLRAGRYFVWAAQPV 1090
>TC81952 similar to GP|6056205|gb|AAF02822.1| unknown protein {Arabidopsis
thaliana}, partial (52%)
Length = 1126
Score = 33.9 bits (76), Expect = 0.014
Identities = 15/27 (55%), Positives = 19/27 (69%)
Frame = +1
Query: 1 GKLLLELNRVLRPGGFFVWSTTPVYHK 27
G LL EL+R+LR G+FV+S P Y K
Sbjct: 166 GILLKELDRLLRSNGYFVYSAPPAYRK 246
>TC85980 similar to GP|15294146|gb|AAK95250.1 AT4g18030/T6K21_210 {Arabidopsis
thaliana}, partial (82%)
Length = 2287
Score = 33.1 bits (74), Expect = 0.024
Identities = 14/27 (51%), Positives = 20/27 (73%)
Frame = +3
Query: 1 GKLLLELNRVLRPGGFFVWSTTPVYHK 27
G L+E++RVLRPGGF++ S P+ K
Sbjct: 1185 GMYLMEVDRVLRPGGFWILSGPPINWK 1265
>TC81234 similar to GP|6752888|gb|AAF27920.1| unknown {Malus x domestica},
partial (50%)
Length = 1149
Score = 33.1 bits (74), Expect = 0.024
Identities = 14/27 (51%), Positives = 21/27 (76%)
Frame = +3
Query: 1 GKLLLELNRVLRPGGFFVWSTTPVYHK 27
G L+E++RVLRPGG++V S P++ K
Sbjct: 1050 GIYLMEVDRVLRPGGYWVLSGPPIHWK 1130
>TC86179 similar to GP|6752888|gb|AAF27920.1| unknown {Malus x domestica},
partial (60%)
Length = 1297
Score = 32.0 bits (71), Expect = 0.053
Identities = 13/28 (46%), Positives = 21/28 (74%)
Frame = +1
Query: 1 GKLLLELNRVLRPGGFFVWSTTPVYHKL 28
G ++E++RVLRPGG++V S P+ K+
Sbjct: 1006 GMYMMEVDRVLRPGGYWVLSGPPINWKV 1089
>TC85777 similar to PIR|F86442|F86442 unknown protein [imported] -
Arabidopsis thaliana, partial (89%)
Length = 2381
Score = 31.6 bits (70), Expect = 0.069
Identities = 14/27 (51%), Positives = 20/27 (73%)
Frame = +2
Query: 1 GKLLLELNRVLRPGGFFVWSTTPVYHK 27
G L E++R+LRPGGF+V S PV ++
Sbjct: 971 GIYLQEIHRILRPGGFWVLSGPPVNYE 1051
>TC81625 similar to PIR|T02472|T02472 hypothetical protein At2g45750
[imported] - Arabidopsis thaliana, partial (45%)
Length = 1431
Score = 30.8 bits (68), Expect = 0.12
Identities = 12/27 (44%), Positives = 20/27 (73%)
Frame = +2
Query: 1 GKLLLELNRVLRPGGFFVWSTTPVYHK 27
G L E++R+LRPGG+++ S P++ K
Sbjct: 923 GLYLNEVDRILRPGGYWILSGPPIHWK 1003
>TC88214 similar to GP|4325339|gb|AAD17339.1| F15P23.1 gene product
{Arabidopsis thaliana}, partial (83%)
Length = 1866
Score = 29.6 bits (65), Expect = 0.26
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 1 GKLLLELNRVLRPGGFFVWSTTPV 24
G L E++RVLRPGG+++ S P+
Sbjct: 634 GIYLTEVDRVLRPGGYWILSGPPI 705
>BG586030 similar to PIR|G86271|G86 protein F16A14.7 [imported] - Arabidopsis
thaliana, partial (30%)
Length = 840
Score = 29.6 bits (65), Expect = 0.26
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = +3
Query: 1 GKLLLELNRVLRPGGFFV 18
G L+E++RVL+PGG+FV
Sbjct: 420 GMFLIEVDRVLKPGGYFV 473
>AW776066 similar to GP|6752888|gb| unknown {Malus x domestica}, partial
(31%)
Length = 583
Score = 29.3 bits (64), Expect = 0.34
Identities = 12/27 (44%), Positives = 19/27 (69%)
Frame = +1
Query: 1 GKLLLELNRVLRPGGFFVWSTTPVYHK 27
G + E++RVLRPGG+++ S P+ K
Sbjct: 334 GLYMKEVDRVLRPGGYWILSGPPINWK 414
>TC80791 similar to GP|16648931|gb|AAL24317.1 Unknown protein {Arabidopsis
thaliana}, partial (72%)
Length = 1890
Score = 27.3 bits (59), Expect = 1.3
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 5 LELNRVLRPGGFFVWSTTPV 24
+E++R+LRPGG+ V S PV
Sbjct: 1133 IEVDRLLRPGGYLVISGPPV 1192
>TC82869 similar to PIR|F86442|F86442 unknown protein [imported] -
Arabidopsis thaliana, partial (24%)
Length = 725
Score = 26.2 bits (56), Expect = 2.9
Identities = 9/14 (64%), Positives = 14/14 (99%)
Frame = +1
Query: 3 LLLELNRVLRPGGF 16
+LLE++R+LRPGG+
Sbjct: 271 VLLEMDRILRPGGY 312
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.325 0.146 0.474
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,979,195
Number of Sequences: 36976
Number of extensions: 21190
Number of successful extensions: 145
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of query: 44
length of database: 9,014,727
effective HSP length: 20
effective length of query: 24
effective length of database: 8,275,207
effective search space: 198604968
effective search space used: 198604968
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0403.5