BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0399.7
(167 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC90495 similar to PIR|H84752|H84752 probable DOF zinc finger pr... 172 4e-44
TC84145 similar to GP|7242908|dbj|BAA92506.1 ESTs C23582(S11122)... 130 2e-31
TC80991 similar to GP|15983797|gb|AAL10495.1 AT5g39660/MIJ24_130... 128 9e-31
BE999782 similar to PIR|T09661|T096 ascorbate oxidase promoter-b... 122 7e-29
TC79428 similar to PIR|T09661|T09661 ascorbate oxidase promoter-... 118 1e-27
TC81778 similar to GP|7242908|dbj|BAA92506.1 ESTs C23582(S11122)... 116 5e-27
TC88035 similar to GP|6092016|dbj|BAA85655.1 elicitor-responsive... 100 4e-22
BE324413 homologue to GP|10176912|dbj zinc finger protein {Arabi... 99 6e-22
BG454338 homologue to PIR|T52044|T520 dof zinc finger protein [i... 99 8e-22
TC93332 similar to PIR|T48267|T48267 probable zinc finger protei... 98 2e-21
TC87666 homologue to GP|4996640|dbj|BAA78572.1 Dof zinc finger p... 97 4e-21
AW585659 similar to GP|2262110|gb|A zinc finger protein isolog {... 96 5e-21
TC87766 similar to GP|10177472|dbj|BAB10863. contains similarity... 96 5e-21
BG586298 homologue to PIR|T08455|T08 hypothetical protein F22O6.... 96 7e-21
TC80314 similar to PIR|D86409|D86409 hypothetical protein AAF984... 96 7e-21
AW257152 similar to PIR|D86409|D864 hypothetical protein AAF9842... 95 1e-20
TC83748 homologue to PIR|T02375|T02375 finger protein BBF3 - com... 92 7e-20
BF519526 similar to PIR|T02525|T025 probable DOF zinc finger pro... 85 1e-17
TC90843 similar to GP|6092016|dbj|BAA85655.1 elicitor-responsive... 80 2e-16
AJ501058 homologue to PIR|T02203|T022 finger protein Dof - commo... 77 2e-15
>TC90495 similar to PIR|H84752|H84752 probable DOF zinc finger protein
[imported] - Arabidopsis thaliana, partial (41%)
Length = 620
Score = 172 bits (437), Expect = 4e-44
Identities = 93/163 (57%), Positives = 109/163 (66%), Gaps = 2/163 (1%)
Frame = +3
Query: 1 MAQVQSGQDSEGIKLFGTTITLHGGRETRERSEDKKGSGEERDQ--EKKPDKIIPCPRCK 58
MA+V+ G++++GIKLFGTTI LHG E K+G E DQ EKK +KIIPCPRCK
Sbjct: 114 MAEVRKGEENQGIKLFGTTIKLHG-------EELKEGEKESEDQTVEKKIEKIIPCPRCK 272
Query: 59 SMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKMRPSCDELLDGGGSI 118
SMETKFCYFNNYNVNQPRHFCK CQRYWTAGGALRNVPVGAGRRK +P E S
Sbjct: 273 SMETKFCYFNNYNVNQPRHFCKSCQRYWTAGGALRNVPVGAGRRKAKPPGHEDSGSPESC 452
Query: 119 CDASATVEQLGLGTHREWHEAAAMFHGDFRQLFPSKRPRTTAG 161
+A+ + G + E DFR++F KR R T+G
Sbjct: 453 LYEAASSDD---GHNYLGLEQFMPPQSDFREVFSGKRRRKTSG 572
>TC84145 similar to GP|7242908|dbj|BAA92506.1 ESTs C23582(S11122)
AU056531(S20663) correspond to a region of the predicted
gene.~Similar to AOBP, partial (16%)
Length = 673
Score = 130 bits (328), Expect = 2e-31
Identities = 59/109 (54%), Positives = 75/109 (68%), Gaps = 4/109 (3%)
Frame = +3
Query: 3 QVQSGQDSEGIKLFGTTITLHGGRETRERSEDKKGSGEERDQE----KKPDKIIPCPRCK 58
QV +D+ I T TL + R+ + K + + D + KKPDK++PCPRC
Sbjct: 84 QVNPQEDANAIPNMYNTGTLKPVTKAVHRTNEHKTAKRDTDNQEKVFKKPDKVLPCPRCN 263
Query: 59 SMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKMRPS 107
S+ETKFCYFNNYNVNQPRHFCK CQRYWTAGG +RNVP+GAG+R+ + S
Sbjct: 264 SLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGVIRNVPIGAGKRRNKQS 410
>TC80991 similar to GP|15983797|gb|AAL10495.1 AT5g39660/MIJ24_130
{Arabidopsis thaliana}, partial (19%)
Length = 782
Score = 128 bits (322), Expect = 9e-31
Identities = 56/71 (78%), Positives = 59/71 (82%)
Frame = +3
Query: 33 EDKKGSGEERDQEKKPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGAL 92
E + S E KKPDKIIPCPRC SM+TKFCYFNNYNVNQPRHFCK CQRYWTAGG +
Sbjct: 441 EQSETSVSEEKTLKKPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKKCQRYWTAGGTM 620
Query: 93 RNVPVGAGRRK 103
RNVPVGAGRRK
Sbjct: 621 RNVPVGAGRRK 653
>BE999782 similar to PIR|T09661|T096 ascorbate oxidase promoter-binding
protein AOBP - winter squash, partial (17%)
Length = 630
Score = 122 bits (306), Expect = 7e-29
Identities = 51/60 (85%), Positives = 56/60 (93%)
Frame = +2
Query: 48 PDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKMRPS 107
PDKI+PCPRC SM+TKFCY+NNYNVNQPRHFCK CQRYWTAGGA+RNVPVGAGRRK + S
Sbjct: 2 PDKILPCPRCYSMDTKFCYYNNYNVNQPRHFCKKCQRYWTAGGAMRNVPVGAGRRKNKNS 181
>TC79428 similar to PIR|T09661|T09661 ascorbate oxidase promoter-binding
protein AOBP - winter squash, partial (27%)
Length = 997
Score = 118 bits (296), Expect = 1e-27
Identities = 50/79 (63%), Positives = 63/79 (79%), Gaps = 1/79 (1%)
Frame = +1
Query: 26 RETRERSEDKKGSGEERDQE-KKPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQR 84
+ E+SE + + +++ KKPDK++ CPRC S +TKFCY+NNYNVNQPR+FCK CQR
Sbjct: 442 KSENEQSETTANNNDTQEKTLKKPDKLLLCPRCNSADTKFCYYNNYNVNQPRYFCKACQR 621
Query: 85 YWTAGGALRNVPVGAGRRK 103
YWTAGG +RNVPVGAGRRK
Sbjct: 622 YWTAGGTMRNVPVGAGRRK 678
>TC81778 similar to GP|7242908|dbj|BAA92506.1 ESTs C23582(S11122)
AU056531(S20663) correspond to a region of the predicted
gene.~Similar to AOBP, partial (17%)
Length = 1081
Score = 116 bits (290), Expect = 5e-27
Identities = 55/101 (54%), Positives = 65/101 (63%), Gaps = 3/101 (2%)
Frame = +3
Query: 46 KKPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKMR 105
KKPDKI+ CPRCKS +TKFCYFNNYNVNQPRHFC+ C RYWT GG +RNV VGAGRRK +
Sbjct: 285 KKPDKIVQCPRCKSFDTKFCYFNNYNVNQPRHFCRSCHRYWTNGGTMRNVAVGAGRRKNK 464
Query: 106 PSCDE---LLDGGGSICDASATVEQLGLGTHREWHEAAAMF 143
+ ++ I AS H E+AA+F
Sbjct: 465 HIASQYRHMIVASDGIPTASLETNDSSRYQHGSNLESAAVF 587
>TC88035 similar to GP|6092016|dbj|BAA85655.1 elicitor-responsive Dof
protein ERDP {Pisum sativum}, partial (77%)
Length = 1397
Score = 100 bits (248), Expect = 4e-22
Identities = 40/68 (58%), Positives = 52/68 (75%)
Frame = +3
Query: 40 EERDQEKKPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGA 99
+ER + +P++ + CPRC S TKFCY+NNY++ QPR+FCK C+RYWT GG LRNVPVG
Sbjct: 201 QERKPKPQPEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGG 380
Query: 100 GRRKMRPS 107
G RK + S
Sbjct: 381 GCRKNKRS 404
>BE324413 homologue to GP|10176912|dbj zinc finger protein {Arabidopsis
thaliana}, partial (21%)
Length = 339
Score = 99.4 bits (246), Expect = 6e-22
Identities = 39/58 (67%), Positives = 48/58 (82%)
Frame = +2
Query: 50 KIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKMRPS 107
+++ CPRC S+ TKFCY+NNYN++QPRHFCK C+RYWT GG LRNVPVG G RK + S
Sbjct: 17 EVMKCPRCDSINTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRS 190
>BG454338 homologue to PIR|T52044|T520 dof zinc finger protein [imported] -
Arabidopsis thaliana, partial (37%)
Length = 678
Score = 99.0 bits (245), Expect = 8e-22
Identities = 38/53 (71%), Positives = 46/53 (86%)
Frame = +1
Query: 52 IPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKM 104
+ CPRC+S TKFCY+NNYN++QPRHFCK C+RYWT GGALRN+PVG G RK+
Sbjct: 211 LKCPRCESNNTKFCYYNNYNLSQPRHFCKNCKRYWTKGGALRNIPVGGGTRKV 369
>TC93332 similar to PIR|T48267|T48267 probable zinc finger protein -
Arabidopsis thaliana, partial (20%)
Length = 666
Score = 97.8 bits (242), Expect = 2e-21
Identities = 48/111 (43%), Positives = 67/111 (60%), Gaps = 6/111 (5%)
Frame = +1
Query: 52 IPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKMRPSCDEL 111
+ CPRC+S TKFCY+NNYN++QPRHFCK C+RYWT GGALRNVPVG G R+ + +
Sbjct: 127 LKCPRCESTNTKFCYYNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRSKKT---- 294
Query: 112 LDGGGSICDASATVEQLGLGTHREWHEAAAMFH------GDFRQLFPSKRP 156
S ++ + + +E+ +A+ H G+F L P+ RP
Sbjct: 295 ---KKSNTSSTPSKSPISNSNDKEYSTSASAIHSTSTPLGEF--LHPTNRP 432
>TC87666 homologue to GP|4996640|dbj|BAA78572.1 Dof zinc finger protein
{Oryza sativa}, partial (20%)
Length = 1828
Score = 96.7 bits (239), Expect = 4e-21
Identities = 38/61 (62%), Positives = 49/61 (80%)
Frame = +2
Query: 43 DQEKKPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRR 102
+++ +P + I CPRC S TKFCY+NNY++ QPR+FCK C+RYWT GG+LRNVPVG G R
Sbjct: 677 EKKARPQEQINCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSR 856
Query: 103 K 103
K
Sbjct: 857 K 859
>AW585659 similar to GP|2262110|gb|A zinc finger protein isolog {Arabidopsis
thaliana}, partial (27%)
Length = 483
Score = 96.3 bits (238), Expect = 5e-21
Identities = 37/63 (58%), Positives = 50/63 (78%)
Frame = +2
Query: 41 ERDQEKKPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAG 100
ER +++ + I CPRC S+ TKFCY+NNY++ QPR+FCK C+RYWT GG++RN+PVG G
Sbjct: 170 ERKPKQQKQEAINCPRCNSINTKFCYYNNYSLTQPRYFCKTCRRYWTQGGSIRNIPVGGG 349
Query: 101 RRK 103
RK
Sbjct: 350 SRK 358
>TC87766 similar to GP|10177472|dbj|BAB10863. contains similarity to dof
zinc finger protein~gene_id:MQB2.26 {Arabidopsis
thaliana}, partial (21%)
Length = 1516
Score = 96.3 bits (238), Expect = 5e-21
Identities = 38/50 (76%), Positives = 44/50 (88%)
Frame = +2
Query: 54 CPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRK 103
CPRC+S TKFCY+NNYN++QPRHFCK C+RYWT GGALRNVPVG G R+
Sbjct: 332 CPRCESTNTKFCYYNNYNLSQPRHFCKTCRRYWTKGGALRNVPVGGGCRR 481
>BG586298 homologue to PIR|T08455|T08 hypothetical protein F22O6.180 -
Arabidopsis thaliana, partial (65%)
Length = 723
Score = 95.9 bits (237), Expect = 7e-21
Identities = 46/80 (57%), Positives = 56/80 (69%), Gaps = 14/80 (17%)
Frame = +3
Query: 40 EERDQEK----------KPD---KIIP-CPRCKSMETKFCYFNNYNVNQPRHFCKGCQRY 85
EERD E+ +P+ +I P CPRC S TKFCY+NNY++ QPR+FCKGC+RY
Sbjct: 111 EERDMERTEALTSSFIWRPNANAEITPSCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRY 290
Query: 86 WTAGGALRNVPVGAGRRKMR 105
WT GG+LRNVPVG G RK R
Sbjct: 291 WTKGGSLRNVPVGGGCRKSR 350
>TC80314 similar to PIR|D86409|D86409 hypothetical protein AAF98424.1
[imported] - Arabidopsis thaliana, partial (19%)
Length = 986
Score = 95.9 bits (237), Expect = 7e-21
Identities = 37/66 (56%), Positives = 50/66 (75%)
Frame = +1
Query: 40 EERDQEKKPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGA 99
+++ Q ++ + + CPRC S TKFCY+NNYN +QPRHFC+ C+R+WT GG LRNVPVG
Sbjct: 412 QQQQQSQQQAEHLNCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGG 591
Query: 100 GRRKMR 105
GR+ R
Sbjct: 592 GRKNKR 609
>AW257152 similar to PIR|D86409|D864 hypothetical protein AAF98424.1
[imported] - Arabidopsis thaliana, partial (20%)
Length = 587
Score = 95.1 bits (235), Expect = 1e-20
Identities = 40/65 (61%), Positives = 51/65 (77%)
Frame = +1
Query: 39 GEERDQEKKPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVG 98
G+E Q+++ + + CPRC S TKFCY+NNY+++QPRHFCK C+RYWT GG LRNVPVG
Sbjct: 88 GQELLQQQQ--QALRCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVG 261
Query: 99 AGRRK 103
G RK
Sbjct: 262 GGCRK 276
>TC83748 homologue to PIR|T02375|T02375 finger protein BBF3 - common tobacco
(fragment), partial (60%)
Length = 658
Score = 92.4 bits (228), Expect = 7e-20
Identities = 38/63 (60%), Positives = 46/63 (72%)
Frame = +3
Query: 41 ERDQEKKPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAG 100
ER D + CPRC S TKFCY+NNY+++QPR+FCK C+RYWT GG LRN+PVG G
Sbjct: 342 ERRLRPPHDLSLKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGG 521
Query: 101 RRK 103
RK
Sbjct: 522 CRK 530
>BF519526 similar to PIR|T02525|T025 probable DOF zinc finger protein
[imported] - Arabidopsis thaliana, partial (26%)
Length = 453
Score = 85.1 bits (209), Expect = 1e-17
Identities = 33/47 (70%), Positives = 37/47 (78%)
Frame = +1
Query: 48 PDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRN 94
P+ + CPRC S TKFCYFNNY++ QPRHFCK C RYWT GGALRN
Sbjct: 313 PEPALKCPRCDSTNTKFCYFNNYSLTQPRHFCKTCMRYWTRGGALRN 453
>TC90843 similar to GP|6092016|dbj|BAA85655.1 elicitor-responsive Dof
protein ERDP {Pisum sativum}, partial (19%)
Length = 698
Score = 79.7 bits (195), Expect(2) = 2e-16
Identities = 30/40 (75%), Positives = 34/40 (85%)
Frame = +1
Query: 54 CPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALR 93
CPRC S TKFCY+NNYN+ QPRHFCK C+RYWT GGAL+
Sbjct: 325 CPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALK 444
Score = 21.6 bits (44), Expect(2) = 2e-16
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +2
Query: 93 RNVPVGAGRRK 103
RNVP+G G RK
Sbjct: 443 RNVPIGGGCRK 475
>AJ501058 homologue to PIR|T02203|T022 finger protein Dof - common tobacco
(fragment), partial (20%)
Length = 215
Score = 77.4 bits (189), Expect = 2e-15
Identities = 29/50 (58%), Positives = 38/50 (76%)
Frame = +3
Query: 41 ERDQEKKPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGG 90
ER + D+ + CPRC S TKFCY+NNY+++QPR+FCK C+RYWT GG
Sbjct: 66 ERKARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGG 215
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.318 0.136 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,940,660
Number of Sequences: 36976
Number of extensions: 94152
Number of successful extensions: 543
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of query: 167
length of database: 9,014,727
effective HSP length: 89
effective length of query: 78
effective length of database: 5,723,863
effective search space: 446461314
effective search space used: 446461314
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0399.7