BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0388a.6
(1591 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG644690 weakly similar to GP|18542179|gb putative pol protein {... 193 3e-67
BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2... 209 7e-54
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid... 173 4e-43
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi... 172 1e-42
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported... 165 1e-40
BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2... 162 7e-40
TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret... 141 2e-33
BG587170 similar to PIR|F86470|F8 probable retroelement polyprot... 118 2e-26
BI262917 weakly similar to GP|19920130|g Putative retroelement {... 116 6e-26
TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-relate... 77 8e-26
AJ502495 weakly similar to GP|18071369|g putative gag-pol polypr... 115 2e-25
TC89912 weakly similar to PIR|B84512|B84512 probable retroelemen... 108 1e-23
BG586293 weakly similar to PIR|E84473|E84 probable retroelement ... 96 1e-19
BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vu... 92 1e-18
BG586273 weakly similar to PIR|F86470|F8 probable retroelement p... 80 6e-15
BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T... 72 1e-12
CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotia... 70 9e-12
BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sati... 69 1e-11
AJ499215 weakly similar to GP|6642775|gb| gag-pol polyprotein {V... 63 8e-10
BG587174 similar to PIR|A47759|A4775 retrovirus-related reverse ... 60 5e-09
>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
partial (22%)
Length = 629
Score = 193 bits (490), Expect(2) = 3e-67
Identities = 89/141 (63%), Positives = 116/141 (82%)
Frame = -2
Query: 1179 VVRNKARLVAQGYSQQEGIDYTETFAPIARLEAIRLLISFSVNHNIVLHQMDVKSAFLNG 1238
+ RNK++LV QGY+Q+EGIDY E F+P+AR+EAIR+LI+F+ L+QMDVKSAF+NG
Sbjct: 424 ITRNKSKLVVQGYNQKEGIDYDEAFSPVARMEAIRILIAFAAFMGFKLYQMDVKSAFING 245
Query: 1239 YISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDT 1298
+ EEV+V QPPGFED + P+HVF+L K+LYGLKQAPRAWYERLS FLL+N F RGK+D
Sbjct: 244 DLKEEVFVKQPPGFEDAEVPNHVFRLNKTLYGLKQAPRAWYERLSKFLLKNGFKRGKIDN 65
Query: 1299 TLFCKTYKDDILVVQIYVDDI 1319
TLF + ++L++Q+YVDDI
Sbjct: 64 TLFLLKRE*ELLIIQVYVDDI 2
Score = 82.8 bits (203), Expect(2) = 3e-67
Identities = 37/64 (57%), Positives = 49/64 (75%)
Frame = -3
Query: 1110 LLSLKGLVSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPESVHVIGTKWVF 1169
L+S +S IEPK++ EAL+D DWI +M+EEL+QF ++ VW LV +PE VIGT+WVF
Sbjct: 621 LVSFSAFISSIEPKNVKEALRDADWINSMQEELHQFERSKVWYLVPRPEGKTVIGTRWVF 442
Query: 1170 RNKL 1173
RNKL
Sbjct: 441 RNKL 430
>BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2O9.150 -
Arabidopsis thaliana, partial (11%)
Length = 732
Score = 209 bits (532), Expect = 7e-54
Identities = 102/217 (47%), Positives = 144/217 (66%), Gaps = 1/217 (0%)
Frame = +1
Query: 1354 IQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYRGM 1413
++V Q EG YI Q KY +LL++F M +S +++ P+ P C L K++ KV Y+ +
Sbjct: 1 VEVIQNEEGIYICQRKYVTDLLERFGMEKSNLSRNPIAPRCKLIKDENGVKVDATKYKQI 180
Query: 1414 IGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKDTTNLGLMYKKTSEYK 1473
+G L+YL A+RPD+++ + L +RF + P E H+ AVKR+LRYL T NLG+MYK+ K
Sbjct: 181 VGCLMYLAATRPDLMYVLSLISRFMNCPTELHMHAVKRVLRYLNGTINLGIMYKRNGSEK 360
Query: 1474 LSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWESKRQSTIALSTAEAEYISAAICSTQK 1533
L Y D+DYAGD +RKSTSG L S VSW SK+Q + LST +AE+I+AA C+ Q
Sbjct: 361 LEAYTDSDYAGDLDDRKSTSGYVFMLSSGAVSWSSKKQPVVTLSTTKAEFIAAAFCACQS 540
Query: 1534 LWMKHQLEDYQILES-NIPIYCDNTAAISLSKNPILH 1569
+WM+ LE +S +I +YCDN + I LSKNP+LH
Sbjct: 541 VWMRRVLEKLGYTQSGSITMYCDNNSTIKLSKNPVLH 651
>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
thaliana}, partial (14%)
Length = 778
Score = 173 bits (439), Expect = 4e-43
Identities = 90/251 (35%), Positives = 149/251 (58%), Gaps = 6/251 (2%)
Frame = +3
Query: 1121 EPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPESVHVIGTKWVFRNKLNEKGDVV 1180
+P + +EA++ + W +M E+ +N+ W L IG KW+F+ KLNE G++
Sbjct: 39 DPTTFEEAVKSEKWRASMNNEMEATERNNTWELTDLRSGAKTIGLKWIFKTKLNENGEIE 218
Query: 1181 RNKARLVAQGYSQQEGIDYTETFAPIARLEAIRLLISFSV---NHNIVLHQMDVKSAFLN 1237
+ KARLVA+GYSQQ G+DYTE FAP+AR + IR++I+ + + + M + +
Sbjct: 219 KYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAAQIKRDGVCIS*M*KAHSCME 398
Query: 1238 GYISEEVYVHQPPGFEDEKKPDHVF--KLKKSLYGLKQAPRAWYERLSSFLLENEFVRGK 1295
+ + + ++ V ++K++LYGLKQAPRAWY R+ ++ + F +
Sbjct: 399 N*MRKFLLINH------RVM*RRVIS*RVKRALYGLKQAPRAWYSRIEAYFTKEGFEKCP 560
Query: 1296 VDTTLFCKTYK-DDILVVQIYVDDIIFGSANQSLCKEFSKMMQAEFEMSMMGELTYFLGI 1354
+ TLF K + IL++ +YVDD+IF ++++ +EF K M+ EF MS +G++ YFLG+
Sbjct: 561 YEHTLFVKLSEGGKILIISLYVDDLIFIGNDENMFEEFKKSMKKEFNMSDLGKMHYFLGV 740
Query: 1355 QVDQTPEGTYI 1365
+V Q +G YI
Sbjct: 741 EVTQNEKGIYI 773
>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
partial (9%)
Length = 675
Score = 172 bits (435), Expect = 1e-42
Identities = 95/218 (43%), Positives = 128/218 (58%), Gaps = 3/218 (1%)
Frame = +1
Query: 1113 LKGLVSLIEPKSID---EALQDKDWILAMEEELNQFSKNDVWSLVKKPESVHVIGTKWVF 1169
LK V L EP D L D W+ AM+ E N W LV P IG KWV+
Sbjct: 25 LKPKVFLTEPCPQDCENLPLSDPRWLQAMKTEYKALIDNKTWDLVPLPPHKKAIGCKWVY 204
Query: 1170 RNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAPIARLEAIRLLISFSVNHNIVLHQM 1229
R K N G V + KARLVA+G+SQ G DYTETF+P+ + IRL+++ ++ + + Q+
Sbjct: 205 RVKENPDGSVNKFKARLVAKGFSQTLGCDYTETFSPVIKPVTIRLILTIAITYKWEIQQI 384
Query: 1230 DVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLEN 1289
D+ +AFLNG++ EEVY+ QP GFE K V KL KSLYGLKQAPRAWYE L+S ++
Sbjct: 385 DINNAFLNGFLQEEVYMSQPQGFEAANK-SLVCKLNKSLYGLKQAPRAWYEXLTSAQIQF 561
Query: 1290 EFVRGKVDTTLFCKTYKDDILVVQIYVDDIIFGSANQS 1327
F + + D +L + + IYVDDI+ ++ S
Sbjct: 562 GFTKSRCDPSLLIYNQNGACIYLXIYVDDILITGSSAS 675
>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
Arabidopsis thaliana, partial (17%)
Length = 618
Score = 165 bits (418), Expect = 1e-40
Identities = 80/183 (43%), Positives = 118/183 (63%)
Frame = -1
Query: 1122 PKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPESVHVIGTKWVFRNKLNEKGDVVR 1181
P+S +EA++DK+W ++ E KND W + P+ + ++W+F K G + R
Sbjct: 558 PRSYEEAMEDKEWKESVGAEAGAMIKNDTWYESELPKGKKAVSSRWIFTIKYKADGSIER 379
Query: 1182 NKARLVAQGYSQQEGIDYTETFAPIARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYIS 1241
K RLVA+G++ G DY ETFAP+A+L IR+++S +VN L QMDVK+AFL G +
Sbjct: 378 KKTRLVARGFTLTYGEDYIETFAPVAKLHTIRIVLSLAVNLGWGLWQMDVKNAFLQGELE 199
Query: 1242 EEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLF 1301
+EVY++ PPG E K +V +LKK++YGLKQ+PRAWY +LS+ L F + ++D TLF
Sbjct: 198 DEVYMYPPPGLEHLVKRGNVLRLKKAIYGLKQSPRAWYNKLSTTLNGRGFRKSELDHTLF 19
Query: 1302 CKT 1304
T
Sbjct: 18 TLT 10
>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (10%)
Length = 744
Score = 162 bits (411), Expect = 7e-40
Identities = 91/241 (37%), Positives = 134/241 (54%)
Frame = +2
Query: 1261 VFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILVVQIYVDDII 1320
V +L+KS+YGLKQA R WY +LS L+ +++ D +LF K + +YVDDI+
Sbjct: 20 VCELQKSIYGLKQASRQWYSKLSESLISFGYLQSSSDFSLFTKFKDSSFTTLLVYVDDIV 199
Query: 1321 FGSANQSLCKEFSKMMQAEFEMSMMGELTYFLGIQVDQTPEGTYIHQSKYTKELLKKFNM 1380
+ S + + F++ +G L YFLG++V ++ +G ++Q KYT ELL+
Sbjct: 200 LAGNDISEIQHVKCFLIDRFKIKDLGSLRYFLGLEVARSKQGILLNQRKYTLELLEDSGN 379
Query: 1381 LESTVAKTPMHPTCILEKEDASGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSD 1440
L TP + L D+ + YR +IG L+YLT +RPDI F+V ++F S
Sbjct: 380 LAVKSTLTPYDISLKLHNSDSPLYNDETQYRRLIGKLIYLTTTRPDISFAVQQLSQFVSK 559
Query: 1441 PRETHLTAVKRILRYLKDTTNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLG 1500
P++ H A R+L+YLK GL Y TS KLS + D+D+A T RKS +G FLG
Sbjct: 560 PQQVHYQAAIRVLQYLKTAPAKGLFYSATSNLKLSSFADSDWATCPTTRKSVTGYWVFLG 739
Query: 1501 S 1501
S
Sbjct: 740 S 742
>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
{Oryza sativa} [Oryza sativa (japonica cultivar-group)],
partial (10%)
Length = 823
Score = 141 bits (356), Expect = 2e-33
Identities = 85/255 (33%), Positives = 130/255 (50%), Gaps = 3/255 (1%)
Frame = +1
Query: 764 GLPNLKFASDALCEACQKG-KFTKVPFKAKNVVSTSRPLELLHIDLFGPVKSESIGGKRY 822
G+ L+F L +K F+ + K + L+ +H DL+GP K S GG+RY
Sbjct: 1 GIDKLEFCKHLLFFGNRKKVSFSTATHRTKGI------LDYIHSDLWGPSKVTSYGGRRY 162
Query: 823 GMIIVDDYSRWTWVKFLTRKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFES 882
M I+DD+ R WV FL K+E+ F + V+ + + ++ +D+ EF + F
Sbjct: 163 MMTIIDDFPRKVWVYFLRYKNETFPTFKKWRILVETQTGKNVKKLITDN*LEFCSSDFNE 342
Query: 883 LFDSYGIAHDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGM--AKHFWTEAVNTACYI 940
++GIA + PR PQQNGV ER RTL E AR ML G+ + W EA +TAC++
Sbjct: 343 FCTNHGIARHKTIPRNPQQNGVAERMIRTLLERARCMLSNAGL*N*RDLWVEAASTACHL 522
Query: 941 QNRISVRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYS 1000
NR + K P ++W + S FGC Y L +L ++ +C+ L Y+
Sbjct: 523 VNRSPHSALDFKVPEDIWSGNLVDYSNLRIFGCPAYALVNDGKL---APRAGECIFLSYA 693
Query: 1001 ERSKGFRFYNTDAKT 1015
SKG+R + +D K+
Sbjct: 694 SESKGYRLWCSDPKS 738
>BG587170 similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 718
Score = 118 bits (296), Expect = 2e-26
Identities = 83/240 (34%), Positives = 125/240 (51%), Gaps = 4/240 (1%)
Frame = -3
Query: 712 KNNIYKIRLSELEAQNVKCLL----SVNEEQWVWHRRLGHASMRKISQLSKLNLVRGLPN 767
K ++Y + + N KC S+N++ +WH RLGH R LNL+ LP
Sbjct: 674 KGDLYMLEKLD-PVSNYKCSFTSSSSLNKDA-LWHARLGHPHGRA------LNLM--LPG 525
Query: 768 LKFASDALCEACQKGKFTKVPFKAKNVVSTSRPLELLHIDLFGPVKSESIGGKRYGMIIV 827
+ F + CEAC GK K F + V + +L++ DL+ S S +Y + +
Sbjct: 524 VVFENKN-CEACILGKHCKNVFPRTSTVYENC-FDLIYTDLW-TAPSLSRDNHKYFVTFI 354
Query: 828 DDYSRWTWVKFLTRKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSY 887
D+ S++TW+ + KD F F A V N +I +RSD+GGE+ + F+S D +
Sbjct: 353 DEKSKYTWLTLIPSKDRVIDAFKNFQAYVTNHYHAKIKILRSDNGGEYTSYAFKSHLDHH 174
Query: 888 GIAHDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWTEAVNTACYIQNRISVR 947
GI H SCP TPQQNGV +RKN+ L E+AR+++ + V+TACY+ N I +
Sbjct: 173 GILHQTSCPYTPQQNGVAKRKNKHLMEVARSLMFQAN---------VSTACYLINWIPTK 21
>BI262917 weakly similar to GP|19920130|g Putative retroelement {Oryza sativa}
[Oryza sativa (japonica cultivar-group)], partial (8%)
Length = 426
Score = 116 bits (291), Expect = 6e-26
Identities = 57/113 (50%), Positives = 68/113 (59%)
Frame = +1
Query: 898 TPQQNGVVERKNRTLQEMARTMLQETGMAKHFWTEAVNTACYIQNRISVRPILNKTPYEL 957
TPQQNGV ER NRTL E R ML+ GMAK FW EAV TACY+ NR I KTP E+
Sbjct: 85 TPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTVIDLKTPMEM 264
Query: 958 WKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSERSKGFRFYN 1010
WK + S H FGC YV+ K D KS KC+ LGY++ KG+ ++
Sbjct: 265 WKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYXLWD 423
>TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
(EC 3.4.23.-);, partial (7%)
Length = 705
Score = 76.6 bits (187), Expect(2) = 8e-26
Identities = 40/87 (45%), Positives = 58/87 (65%)
Frame = +1
Query: 1449 VKRILRYLKDTTNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWES 1508
VKRI+RY+K T+ + + + SE + GY D+D+AGD +RKST+G L VSW S
Sbjct: 1 VKRIMRYIKGTSGVAVCFGG-SELTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLS 177
Query: 1509 KRQSTIALSTAEAEYISAAICSTQKLW 1535
K Q+ +ALST EAEY++A + +KL+
Sbjct: 178 KLQTVVALSTTEAEYMAAYLKHARKLF 258
Score = 60.5 bits (145), Expect(2) = 8e-26
Identities = 22/58 (37%), Positives = 40/58 (68%)
Frame = +3
Query: 1532 QKLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYV*KG 1589
+ +WM+ +E+ + I +YCD+ +A+ +++NP HSR KHI ++YHF+R+ V +G
Sbjct: 249 EAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVREVVEEG 422
>AJ502495 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
sativa}, partial (9%)
Length = 542
Score = 115 bits (287), Expect = 2e-25
Identities = 55/109 (50%), Positives = 77/109 (70%), Gaps = 2/109 (1%)
Frame = +2
Query: 1480 ADYAGDRTERKSTSGNCQFLGSNLVSWESKRQSTIALSTAEAEYISAAICSTQKLWMKHQ 1539
+D+AGD RKSTSG LG+ +SW SK+Q +A STAEAEYI++ C+TQ +W++
Sbjct: 2 SDWAGDTETRKSTSGYAFHLGTGAISWSSKKQPVVAFSTAEAEYIASTSCATQTVWLRRI 181
Query: 1540 LEDYQILESNIP--IYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYV 1586
LE E N P IYCDN +AI+LSKNP+ H R+KHI++++H IR+ +
Sbjct: 182 LE-VMHHEQNTPTKIYCDNKSAIALSKNPVFHGRSKHIDIQFHKIRELI 325
>TC89912 weakly similar to PIR|B84512|B84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(10%)
Length = 814
Score = 108 bits (271), Expect = 1e-23
Identities = 53/141 (37%), Positives = 85/141 (59%), Gaps = 2/141 (1%)
Frame = +1
Query: 1448 AVKRILRYLKDTTNLGLMYKKTSEYK--LSGYCDADYAGDRTERKSTSGNCQFLGSNLVS 1505
A+K +L+YL ++ L Y K ++ + L GY DADYAG+ RKS SG L +S
Sbjct: 4 ALKWVLKYLNESLKSSLKYTKAAQEEDALEGYVDADYAGNVDTRKSLSGFVFTLYGTTIS 183
Query: 1506 WESKRQSTIALSTAEAEYISAAICSTQKLWMKHQLEDYQILESNIPIYCDNTAAISLSKN 1565
W++ +QS + LST +AEYI+ +W+K + + I + + I+CD+ +AI L+ +
Sbjct: 184 WKANQQSVVTLSTTQAEYIAFVEGVKDAIWLKGMIGELGITQEYVKIHCDSQSAIHLANH 363
Query: 1566 PILHSRAKHIEVKYHFIRDYV 1586
+ H R KHI+++ HFIRD +
Sbjct: 364 QVYHERTKHIDIRLHFIRDMI 426
>BG586293 weakly similar to PIR|E84473|E84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(7%)
Length = 763
Score = 95.9 bits (237), Expect = 1e-19
Identities = 48/116 (41%), Positives = 73/116 (62%)
Frame = +2
Query: 1124 SIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPESVHVIGTKWVFRNKLNEKGDVVRNK 1183
S+D + +D I ++ L LVKKP V IG +W+++ K NE G +++ K
Sbjct: 5 SLDRCNEGRDRIYYQKQTLK---------LVKKPTGVKPIGLRWIYKIKRNEDGTLIKYK 157
Query: 1184 ARLVAQGYSQQEGIDYTETFAPIARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGY 1239
ARLVA+GY +Q+GID+ E FAP+ R+E I LL++ + + +H +DVK AFLNG+
Sbjct: 158 ARLVAKGYVKQQGIDFDEVFAPVVRIETI*LLLALAATNGC*IHHIDVKIAFLNGH 325
>BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vulgaris},
partial (13%)
Length = 494
Score = 92.4 bits (228), Expect = 1e-18
Identities = 49/122 (40%), Positives = 73/122 (59%), Gaps = 3/122 (2%)
Frame = +1
Query: 1424 RPDILFSVHLCARFQSDPRETHLTAVKRILRYLKDTTNLGLMY---KKTSEYKLSGYCDA 1480
RPDI +SV + ++F DPR+ HL A RILRY++ T GL++ K+ Y+L Y D+
Sbjct: 121 RPDICYSVSVISKFMHDPRKPHLIAANRILRYVRGTMEYGLLFPYGAKSEVYELICYSDS 300
Query: 1481 DYAGDRTERKSTSGNCQFLGSNLVSWESKRQSTIALSTAEAEYISAAICSTQKLWMKHQL 1540
D+ GD R+STSG +SW +K+Q ALS+ EAEYI+ + Q LW+ +
Sbjct: 301 DWCGD---RRSTSGYVFKFNDAAISWCTKKQPITALSSYEAEYIAGTFATFQALWLDSVI 471
Query: 1541 ED 1542
++
Sbjct: 472 KE 477
>BG586273 weakly similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (7%)
Length = 705
Score = 80.1 bits (196), Expect = 6e-15
Identities = 40/113 (35%), Positives = 67/113 (58%)
Frame = -2
Query: 937 ACYIQNRISVRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLL 996
ACY+ NRI R + ++ P+E+ KP+++Y FGC+CYVL + +K +A+S K +
Sbjct: 704 ACYLINRIPTRVLKDQAPFEVLNQRKPSLTYMRVFGCLCYVLVPGELRNKLEARSRKAMF 525
Query: 997 LGYSERSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADLSINVSDK 1049
+GYS KG++ Y+ +A+ + S V+F ++ + K E DL+ SDK
Sbjct: 524 IGYSTTQKGYKCYDPEARRVLVSRDVKFIEERGYYEEKNQEDLRDLT---SDK 375
>BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T15F17.l
{Arabidopsis thaliana}, partial (3%)
Length = 539
Score = 72.4 bits (176), Expect = 1e-12
Identities = 49/145 (33%), Positives = 72/145 (48%), Gaps = 5/145 (3%)
Frame = -3
Query: 1418 LYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKDTTNLGLMYKKTSEYKLSGY 1477
+ LT P+I FS++L +R+ S P H +K I +YLK ++GL Y K L GY
Sbjct: 531 ILLTLQGPNITFSINLLSRYSSAPTMRH*NGIKHICKYLKGIIDMGLFYSKDCSPDLIGY 352
Query: 1478 CDADYAGDRTERKSTSGNCQFLGSNLVSWESKRQSTIALSTAEAEYISAAI-----CSTQ 1532
+A Y D + +S +G G+ ++SW S + STIA S+ A Y+ + S
Sbjct: 351 VNA*YLSDPHKARS*TGYIFTCGNTVISWRSTK*STIATSSNHA-YVQVIL*H*IRFSIT 175
Query: 1533 KLWMKHQLEDYQILESNIPIYCDNT 1557
K HQL + E +I CD T
Sbjct: 174 KD*TNHQL--FIEFEKHIICLCDKT 106
>CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotiana tabacum},
partial (7%)
Length = 780
Score = 69.7 bits (169), Expect = 9e-12
Identities = 37/74 (50%), Positives = 47/74 (63%)
Frame = -2
Query: 1203 FAPIARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVF 1262
F PI +L I L+S N+ L +DVK+AFL G + E++Y+HQP GF E V
Sbjct: 554 FVPIVKLNTIMFLLSIVAIENLYLE*LDVKTAFLRGDLVEDIYMHQPEGFS*E-VGKMVG 378
Query: 1263 KLKKSLYGLKQAPR 1276
KLKKS+YGLKQ PR
Sbjct: 377 KLKKSMYGLKQGPR 336
>BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 503
Score = 69.3 bits (168), Expect = 1e-11
Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 3/125 (2%)
Frame = +1
Query: 1273 QAPRAWYERLSSFLLENEFVRGKVDTTLFCK---TYKDDILVVQIYVDDIIFGSANQSLC 1329
Q+PR W++R + + + +++ + D +F K T K IL+V YVDDI +
Sbjct: 1 QSPRDWFDRFT*VVKKFGYIQCQTDHAMFIKHSSTVKKAILIV--YVDDIFLTGDHGK*I 174
Query: 1330 KEFSKMMQAEFEMSMMGELTYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTP 1389
K ++ EFE+ +G L YFLG++V + +G+ I Q KY +LLK+ M+ + P
Sbjct: 175 KRLKNLLAEEFEIKDLGNLKYFLGMEVARWKKGSSISQRKYVLDLLKETRMIGCKTIRDP 354
Query: 1390 MHPTC 1394
C
Sbjct: 355 YGCNC 369
Score = 35.4 bits (80), Expect = 0.18
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +2
Query: 1381 LESTVAKTPMHPTCILEKEDASGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARF 1437
L+ ++TPM T L D V + Y+ ++G L+YL+ +RPDI F V ++F
Sbjct: 329 LDVKPSETPMDATVKLGTLDNGTLVDKGRYQRLVGKLIYLSHTRPDISFVVCTMSQF 499
>AJ499215 weakly similar to GP|6642775|gb| gag-pol polyprotein {Vitis
vinifera}, partial (18%)
Length = 567
Score = 63.2 bits (152), Expect = 8e-10
Identities = 41/116 (35%), Positives = 58/116 (49%), Gaps = 3/116 (2%)
Frame = +3
Query: 594 LSMLQISFIAPLKHQSWYLDSGCSRHMTGERRMFQELKLKPGGEVGFGGNEKGKIVGTGT 653
L+M + P K+ W +DSGC+ HMT +R +F+EL +V ++ G GT
Sbjct: 66 LAMSTFATKQPSKY--WLIDSGCTHHMTHDRDLFKELNKSTISKVRMLNGAHIEVEGIGT 239
Query: 654 ICVDSS---PCIYNVLLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVL 706
+ V S I NVL L +LLS+ QL KGY V+F + C Q + VL
Sbjct: 240 VLVKSHSGYKQISNVLYAPKLNQSLLSVPQLLTKGYKVLFEHEKCVIKDQNNKEVL 407
>BG587174 similar to PIR|A47759|A4775 retrovirus-related reverse transcriptase
homolog - rape retrotransposon copia-like (fragment),
partial (84%)
Length = 249
Score = 60.5 bits (145), Expect = 5e-09
Identities = 26/46 (56%), Positives = 34/46 (73%)
Frame = -1
Query: 1240 ISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSF 1285
+ E++Y+ QP GF K DHV KL+KSLYGLKQ+PR WY+R S+
Sbjct: 246 LEEKIYMTQPEGFLFPGKEDHVCKLRKSLYGLKQSPRQWYKRFDSY 109
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.332 0.142 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,593,706
Number of Sequences: 36976
Number of extensions: 666101
Number of successful extensions: 5650
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 3158
Number of HSP's successfully gapped in prelim test: 305
Number of HSP's that attempted gapping in prelim test: 2344
Number of HSP's gapped (non-prelim): 3677
length of query: 1591
length of database: 9,014,727
effective HSP length: 109
effective length of query: 1482
effective length of database: 4,984,343
effective search space: 7386796326
effective search space used: 7386796326
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0388a.6