TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0388a.1
         (728 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG587150 similar to GP|13592175|gb ppg3 {Leishmania major}, part...    74  2e-13
BG644741                                                               60  2e-09
BE999414                                                               39  0.005
BG586274                                                               33  0.51
BE997611                                                               31  1.5
TC85983 weakly similar to GP|8777362|dbj|BAA96952.1 60S acidic r...    30  3.3
TC93226 weakly similar to PIR|B96737|B96737 hypothetical protein...    29  7.3

>BG587150 similar to GP|13592175|gb ppg3 {Leishmania major}, partial (1%)
          Length = 754

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 56/187 (29%), Positives = 91/187 (47%), Gaps = 2/187 (1%)
 Frame = +2

Query: 473 KALAKKSLDKKFSKFVDVFKKLHISIPFADALEQMPIYAKFMKDILHKRRRLKGVDETV- 531
           K +AK        K ++ F+K    IP     E+    A F   +    R  +  +E + 
Sbjct: 113 KKVAKHLKRGANEKEMESFQKRVFMIPLEKPFEE----AYFTHRLWMFFRETRETEEDIR 280

Query: 532 -LMTEECSAILQRKMPKKRRDPGSFTIPVEIEGMADVEALCDLGASINLMPLTMFERLNL 590
            +  E    + +R   KK+ D G F I   ++G+    ALC+ GAS+ ++P  M + L L
Sbjct: 281 RMFCEAREKMKKRITLKKKSDSGKFAISWTMKGIEFPHALCNTGASVIILPRDMADHLGL 460

Query: 591 GEVTPTMLSLQMADRSLKTPYGIVEDVMVWVDKYVFPVDFVVLDMEEDEKIPLILGRPFL 650
            +V P+  S    D S ++  GI+ D+ V +   + PVDF VLD++ +    L+L R FL
Sbjct: 461 -KVDPSKESFTFVDCSQRSSGGIIRDLEVQIGNALVPVDFHVLDIKINWNSSLLLRRAFL 637

Query: 651 ATGRAKI 657
           +TGR  +
Sbjct: 638 STGRGSV 658


>BG644741 
          Length = 735

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 30/114 (26%), Positives = 50/114 (43%)
 Frame = -2

Query: 85  DTIRLSLFPFSLRDTAEEWLNSQPQGSITSWEDLAEKFTTRFVPRALLRKLKNDIMTFTQ 144
           + + L +FP SL   A+ W    P  SI +W  L + F  R+ P +      + +  F  
Sbjct: 599 NVLGLRVFPLSLMGEADIWFTELPYNSIFTWNQLRDVFLARYYPVSKKLNHNDRVNNFVA 420

Query: 145 STDENLYEAWERFKKLLRRCPQHNLTQAEQVAKFYDGLQYSSRFGLDAASSGEF 198
              E++  +W+RF   LR  P H +        FY G   +++  LD  + G +
Sbjct: 419 LPGESVSSSWDRFTSFLRSVPNHRIDDDSLKEYFYRGQDDNNKVVLDTIAGGSY 258


>BE999414 
          Length = 613

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 25/65 (38%), Positives = 31/65 (47%)
 Frame = +3

Query: 62  DPHAHMERFIRNCNTYRVQNVSTDTIRLSLFPFSLRDTAEEWLNSQPQGSITSWEDLAEK 121
           DP  HME  I    TYR        ++  LF  +LR  A  W  +  + SI SW DL  +
Sbjct: 33  DPDEHMEN-IEVVLTYRSVR---GAVKCKLFVTTLRRGAMTWFKNLRRNSIGSWGDLCHE 200

Query: 122 FTTRF 126
           FTT F
Sbjct: 201 FTTHF 215


>BG586274 
          Length = 546

 Score = 32.7 bits (73), Expect = 0.51
 Identities = 23/105 (21%), Positives = 42/105 (39%), Gaps = 10/105 (9%)
 Frame = -3

Query: 300 NDPFSNTYNPGWRNHPNFSWRQGSSGQGNGFQRQFPSQGFQG----------QSLRQPQE 349
           N  ++N     + N+    +   ++ QG+   +Q PS G             + + + Q 
Sbjct: 340 NFQYNNYQQKSYPNNHQSGYPPRNNQQGSYQPQQNPSSGSSAPQESSTDTLLKQILESQT 161

Query: 350 RGEGEGSGSKKSLEELVETFINRTENNYKNQEAANKNLENQFGQL 394
           R E       K+L   ++   N   N + +  +  KNLENQF  +
Sbjct: 160 RSEKHVGYELKNLHSKIDGSYNELNNKFSHLASTVKNLENQFASM 26


>BE997611 
          Length = 547

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 14/59 (23%), Positives = 30/59 (50%)
 Frame = -2

Query: 477 KKSLDKKFSKFVDVFKKLHISIPFADALEQMPIYAKFMKDILHKRRRLKGVDETVLMTE 535
           +K +  KF+    + K   +++P  + +EQ+P   KF++++L     L   +   L +E
Sbjct: 444 EKEVPPKFNALHHILKGYKVNMPITETVEQIPCCIKFLQELLKTNANLSEEEFISLSSE 268


>TC85983 weakly similar to GP|8777362|dbj|BAA96952.1 60S acidic ribosomal
           protein P3 {Arabidopsis thaliana}, partial (85%)
          Length = 653

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +1

Query: 71  IRNCNTYRVQNVSTDTIRLSLFPFSLRDTAEEWLNSQPQGSITSWEDLAEKFTTRFVPRA 130
           +RN N     ++S ++I + +F F L  T  EW   Q  G I +  +   +   + V  A
Sbjct: 22  LRNFNIQLGFSLSPESITMGVFTFVLNKTGAEWTAKQYSGDIEASAESTFEIQRKLVQAA 201

Query: 131 L 131
           L
Sbjct: 202 L 204


>TC93226 weakly similar to PIR|B96737|B96737 hypothetical protein F3I17.10
           [imported] - Arabidopsis thaliana, partial (60%)
          Length = 847

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 15/49 (30%), Positives = 27/49 (54%)
 Frame = -3

Query: 79  VQNVSTDTIRLSLFPFSLRDTAEEWLNSQPQGSITSWEDLAEKFTTRFV 127
           ++N++ DTI +S++   +R  + E L+   + SI S   L     TRF+
Sbjct: 746 IKNITKDTISVSIYKLGIRMVSVELLHH*SESSIVSSNHLIY*IHTRFL 600


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.316    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,131,146
Number of Sequences: 36976
Number of extensions: 245376
Number of successful extensions: 1206
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of query: 728
length of database: 9,014,727
effective HSP length: 103
effective length of query: 625
effective length of database: 5,206,199
effective search space: 3253874375
effective search space used: 3253874375
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)