TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0383.9
         (421 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - ...   152  2e-46
TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alterna...   131  4e-31
BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin...    86  4e-17
AL367832 weakly similar to GP|14091845|gb Putative retroelement ...    59  3e-09
BG644740 similar to PIR|A84460|A84 probable retroelement pol pol...    49  4e-06
BG455032 weakly similar to GP|10440622|gb| putative NBS-LRR type...    30  1.7
TC86485 similar to GP|23315211|gb|AAN20392.1 Sequence 405 from p...    30  2.3
BQ752101 similar to PIR|S57177|S57 branched-chain-amino-acid tra...    29  3.9
TC82670 weakly similar to GP|18389232|gb|AAL67059.1 unknown prot...    28  5.1
BQ137265 similar to GP|21751020|dbj unnamed protein product {Hom...    28  8.7
TC80653 similar to GP|20257495|gb|AAM15917.1 purple acid phospha...    28  8.7

>BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - Arabidopsis
           thaliana, partial (13%)
          Length = 763

 Score =  152 bits (385), Expect(2) = 2e-46
 Identities = 70/136 (51%), Positives = 100/136 (73%)
 Frame = +2

Query: 242 MHPSDEDKTAFMTARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVK 301
           MHP D +KTAF+T R  YCY+ MPFGLKNAG+TYQRL++R+F  ++G  MEVY+DDM+VK
Sbjct: 2   MHPDDLEKTAFITDRGTYCYKVMPFGLKNAGSTYQRLVNRMFADKLGNTMEVYIDDMLVK 181

Query: 302 SVLGSSHHEDLTKAFARLRKHNMRLNPEKCSFGIQGGKFLGFMITTRGIEINLDKCKAIQ 361
           S+  + H   L + F  L ++ M+LNP KC+FG+  G+FLG+++T +GIE+N  +  AI 
Sbjct: 182 SLRATDHLNHLKE*FKTLDEYIMKLNPAKCTFGVTSGEFLGYIVTQQGIEVNPKQITAIL 361

Query: 362 EMKSPGSVKEVQHLIG 377
           ++ SP + +EVQ L G
Sbjct: 362 DLPSPKNSREVQRLTG 409



 Score = 51.2 bits (121), Expect(2) = 2e-46
 Identities = 23/41 (56%), Positives = 29/41 (70%)
 Frame = +3

Query: 377 GRIAALSRFLPHSGDKSAPFFKCLKKNAAFEWNSECEEAFK 417
           GRIAAL+RF+  S DK  PF+K L  N  F W+ +CEEAF+
Sbjct: 408 GRIAALNRFISRSTDKCLPFYKLLCGNKRFVWDEKCEEAFE 530


>TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alternaria
           alternata}, partial (21%)
          Length = 1540

 Score =  131 bits (330), Expect = 4e-31
 Identities = 71/237 (29%), Positives = 124/237 (51%), Gaps = 2/237 (0%)
 Frame = +1

Query: 182 VVMVKKANGKWRMCVDYTDLNKACPKNSYPLPSIDKLVDGASGNELMSLIDAYSGYHQIK 241
           V+ V+K  G  R CVDY  LN    K+ YPLP I + +   +G    + +D  + +H+++
Sbjct: 583 VLFVRKPGGGIRFCVDYRALNAITKKDRYPLPLISETLRRVAGARWFTKLDVVAAFHKMR 762

Query: 242 MHPSDEDKTAFMTARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVK 301
           +   D++KTAF T    + +   PFGL  A AT+QR +++     +   +  Y+DD+++ 
Sbjct: 763 IKDEDQEKTAFRTRYGLFEWIVCPFGLTGAPATFQRYINKTLHEFLDDFVTAYIDDVLIY 942

Query: 302 SVLGSSHHE-DLTKAFARLRKHNMRLNPEKCSFGIQGGKFLGFMITT-RGIEINLDKCKA 359
           +      HE  + +   RL    + L+P+KC F +   K++GF++T  +G+  +  K  A
Sbjct: 943 TTGSKKDHEAQVRRVLRRLADAGLSLDPKKCEFSVTTVKYVGFILTAGKGVSCDPLKLAA 1122

Query: 360 IQEMKSPGSVKEVQHLIGRIAALSRFLPHSGDKSAPFFKCLKKNAAFEWNSECEEAF 416
           I++   PGSVK  +  +G       F+P   + + P  +  +K+  F W +E E AF
Sbjct: 1123IRDWLPPGSVKGARSFLGFCNYYKDFIPGYSEITEPLTRLTRKDFPFRWGAEQEAAF 1293


>BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin cluster;
           Ty3-Gypsy type {Oryza sativa}, partial (15%)
          Length = 716

 Score = 85.5 bits (210), Expect = 4e-17
 Identities = 58/186 (31%), Positives = 90/186 (48%)
 Frame = +2

Query: 135 LNPGIEPVTQTRRQMGDVKEKAIHQEVNKLLAADFIREIKYPTWMTNVVMVKKANGKWRM 194
           L P + P+     ++  +K K +  ++  LL   FI+   YP  +  V+ +KK +G  RM
Sbjct: 53  LLPNMNPI*IPSYRINPLKLKVLKLQLKDLLEKGFIQPSIYP*GVV-VLFLKKKDGFLRM 229

Query: 195 CVDYTDLNKACPKNSYPLPSIDKLVDGASGNELMSLIDAYSGYHQIKMHPSDEDKTAFMT 254
            +DY  LN    K  YPLP ID+L D   G++    ID   G HQ ++   D  KTAF  
Sbjct: 230 SIDYPQLNNVNIKIKYPLPLIDELFDNLQGSKWFFKIDLRLG*HQHRVIGEDVPKTAFRI 409

Query: 255 ARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSSHHEDLTK 314
              +Y    M FG  N    +  LM+RVF+  +   + V+ +D+++ S   + H   L  
Sbjct: 410 RYGHYEILVMSFG*TNPPMAFMELMNRVFQDYLDSLVIVFSNDILIYSKNENEHENHLRL 589

Query: 315 AFARLR 320
           A   L+
Sbjct: 590 ALKVLK 607


>AL367832 weakly similar to GP|14091845|gb Putative retroelement {Oryza
           sativa}, partial (2%)
          Length = 384

 Score = 59.3 bits (142), Expect = 3e-09
 Identities = 35/86 (40%), Positives = 50/86 (57%), Gaps = 3/86 (3%)
 Frame = -1

Query: 108 LLGENLDLFAWSHKDMPGIDPNFI--CLALNPGIEPVT-QTRRQMGDVKEKAIHQEVNKL 164
           LL E LD+FA S++DMPG+DP  +   +   P   PV  + RR   D+  K I  EV K 
Sbjct: 255 LLREYLDIFACSYEDMPGLDPKIVEHRIPTKPECPPVR*KLRRTHPDMALK-IKSEVQKQ 79

Query: 165 LAADFIREIKYPTWMTNVVMVKKANG 190
           + A F+  ++YP W+ N+V V K +G
Sbjct: 78  IDAGFLMTVEYPEWVANIVPVPKKDG 1


>BG644740 similar to PIR|A84460|A84 probable retroelement pol polyprotein
           [imported] - Arabidopsis thaliana, partial (4%)
          Length = 754

 Score = 48.9 bits (115), Expect = 4e-06
 Identities = 20/39 (51%), Positives = 26/39 (66%)
 Frame = -1

Query: 182 VVMVKKANGKWRMCVDYTDLNKACPKNSYPLPSIDKLVD 220
           ++ V+K +G +RMC+DY   NK   KN YPLP ID L D
Sbjct: 232 LLFVRKKDGYFRMCIDYRQFNKVTTKNKYPLPRIDNLFD 116


>BG455032 weakly similar to GP|10440622|gb| putative NBS-LRR type resistance
           protein  3' partial {Oryza sativa}, partial (3%)
          Length = 666

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 19/64 (29%), Positives = 31/64 (47%), Gaps = 1/64 (1%)
 Frame = +1

Query: 184 MVKKANGKWRMCVDYTDLNKACPKNSYP-LPSIDKLVDGASGNELMSLIDAYSGYHQIKM 242
           ++K   G+   C+   D+ K CPK   P LPS+  L      NEL+  I  + G  Q+ +
Sbjct: 64  LLKVERGEMFPCLSSLDIWK-CPKLGLPCLPSLKDLGVDGRNNELLRSISTFRGLTQLTL 240

Query: 243 HPSD 246
           +  +
Sbjct: 241 NSGE 252


>TC86485 similar to GP|23315211|gb|AAN20392.1 Sequence 405 from patent US
            6410718, partial (90%)
          Length = 1927

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 363  MKSPGSVKEVQHLIGRIAALSRFLPHSGDKSAPFFKCLKK 402
            MKSP  +K+VQ  +  +  LSR +  S  +   + KC  K
Sbjct: 1131 MKSPEDLKKVQQELAEVVGLSRQVEESDFEKLTYLKCALK 1250


>BQ752101 similar to PIR|S57177|S57 branched-chain-amino-acid transaminase
           (EC 2.6.1.42) BAT2  cytosolic - yeast, partial (46%)
          Length = 720

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 23/65 (35%), Positives = 30/65 (45%)
 Frame = -2

Query: 49  QRGRPVREKERLGGTLM*RGRCAGREPRHKGRGTSQQAHADRGDQGAEIWREDTQDRDML 108
           +RGRP R   R    L  R R   R+P H       Q H  R D+G  +WR+  QD  + 
Sbjct: 257 RRGRPGRPSHR---GLWYRHR-RHRQP-HSHHCLEGQIHQLRSDRGRGVWRDCPQDEGLD 93

Query: 109 LGENL 113
            GE +
Sbjct: 92  *GETV 78


>TC82670 weakly similar to GP|18389232|gb|AAL67059.1 unknown protein
           {Arabidopsis thaliana}, partial (18%)
          Length = 716

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 13/31 (41%), Positives = 15/31 (47%)
 Frame = +1

Query: 199 TDLNKACPKNSYPLPSIDKLVDGASGNELMS 229
           T L + C KNSYPLP      +G   N   S
Sbjct: 52  TKLQELCQKNSYPLPEYQTTREGPPHNSRFS 144


>BQ137265 similar to GP|21751020|dbj unnamed protein product {Homo
          sapiens}, partial (9%)
          Length = 1112

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 20/52 (38%), Positives = 22/52 (41%)
 Frame = +2

Query: 29 AEWTNWESGCGPKKGEGVLLQRGRPVREKERLGGTLM*RGRCAGREPRHKGR 80
          A+ T W        G GV L         +  G T   RGRC GRE R KGR
Sbjct: 11 AQRTRWIPQAAKNSGPGVRLA--------QITGATAAARGRCEGRE-RSKGR 139


>TC80653 similar to GP|20257495|gb|AAM15917.1 purple acid phosphatase
            {Arabidopsis thaliana}, partial (67%)
          Length = 1661

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -2

Query: 216  DKLVDGASGNELMSLIDAYSGYHQIKMHP 244
            ++LV  AS N L S + + S +HQ+++HP
Sbjct: 1630 EQLVGLASLNMLSSCLSSLSRFHQLQLHP 1544


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.322    0.138    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,500,667
Number of Sequences: 36976
Number of extensions: 179098
Number of successful extensions: 756
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of query: 421
length of database: 9,014,727
effective HSP length: 99
effective length of query: 322
effective length of database: 5,354,103
effective search space: 1724021166
effective search space used: 1724021166
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)