TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0378b.13
         (282 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC77078 similar to GP|21537078|gb|AAM61419.1 putaive DNA-binding...    27  6.8

>TC77078 similar to GP|21537078|gb|AAM61419.1 putaive DNA-binding protein
            {Arabidopsis thaliana}, partial (51%)
          Length = 1346

 Score = 27.3 bits (59), Expect = 6.8
 Identities = 11/19 (57%), Positives = 14/19 (72%)
 Frame = +3

Query: 35   QNDHDP*KLCGFYLFLLWL 53
            QN++D  KL  FYLF+ WL
Sbjct: 1290 QNNYDEIKLYKFYLFIYWL 1346


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.359    0.161    0.584 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,483,397
Number of Sequences: 36976
Number of extensions: 141979
Number of successful extensions: 1391
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1391
length of query: 282
length of database: 9,014,727
effective HSP length: 95
effective length of query: 187
effective length of database: 5,502,007
effective search space: 1028875309
effective search space used: 1028875309
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 58 (26.9 bits)