TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0367.7
         (172 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC82153 similar to SP|O81263|KITH_ORYSA Thymidine kinase (EC 2.7...   201  9e-61
TC76913 similar to SP|O04450|TCPE_ARATH T-complex protein 1  eps...    27  3.1

>TC82153 similar to SP|O81263|KITH_ORYSA Thymidine kinase (EC 2.7.1.21).
           [Rice] {Oryza sativa}, partial (68%)
          Length = 731

 Score =  201 bits (512), Expect(2) = 9e-61
 Identities = 98/131 (74%), Positives = 112/131 (84%), Gaps = 1/131 (0%)
 Frame = +3

Query: 42  GVDAYEQLDVIGIDEAQFFDDLYDFCREAADHDGKTVVVAGLDGNYLRRNFGSVLDIIPL 101
           G +AY++LDVIGIDEAQFF+DLYDFC +AAD DGK VVVAGLDG+Y+RR+FGSVL IIP+
Sbjct: 93  GHEAYQKLDVIGIDEAQFFEDLYDFCCKAADEDGKIVVVAGLDGDYMRRSFGSVLHIIPI 272

Query: 102 ADSVTKLTARCEICGKHAFFTLRKTQETQVELIGGVDVYMPVCRQHYVNGQVAMETT-RL 160
           AD+VTKLTARCE+CGK AFFTLRKT E Q ELIGG D+YMPVCR HYVNGQV +E   + 
Sbjct: 273 ADTVTKLTARCELCGKRAFFTLRKTGEKQTELIGGADLYMPVCRHHYVNGQVVVEAAMKS 452

Query: 161 VLESQKVECGS 171
           V  SQKV CGS
Sbjct: 453 VFGSQKVGCGS 485



 Score = 48.5 bits (114), Expect(2) = 9e-61
 Identities = 19/30 (63%), Positives = 23/30 (76%)
 Frame = +2

Query: 12 RYGLDSIVTHDGTKLPCWALANLSSFKQKF 41
          RY +DS+VTHDG K PCWAL +L  FK K+
Sbjct: 2  RYAVDSVVTHDGIKFPCWALPDLMLFKDKY 91


>TC76913 similar to SP|O04450|TCPE_ARATH T-complex protein 1  epsilon
           subunit (TCP-1-epsilon) (CCT-epsilon). [Mouse-ear
           cress], complete
          Length = 1965

 Score = 27.3 bits (59), Expect = 3.1
 Identities = 12/43 (27%), Positives = 22/43 (50%)
 Frame = +1

Query: 38  KQKFGVDAYEQLDVIGIDEAQFFDDLYDFCREAADHDGKTVVV 80
           K K  +D  E+   +   E ++FDD+   C++     G T+V+
Sbjct: 883 KHKVDIDTVEKFQTLRKQEQKYFDDMVQQCKDV----GATLVI 999


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.322    0.138    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,778,773
Number of Sequences: 36976
Number of extensions: 56480
Number of successful extensions: 211
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of query: 172
length of database: 9,014,727
effective HSP length: 89
effective length of query: 83
effective length of database: 5,723,863
effective search space: 475080629
effective search space used: 475080629
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)