BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0360.9
(107 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC91678 similar to GP|21592347|gb|AAM64298.1 unknown {Arabidopsi... 125 3e-30
BI310451 weakly similar to GP|7339698|dbj| Similar to Caenorhabd... 28 0.42
TC89256 similar to PIR|T47525|T47525 kinesin-related protein-lik... 25 4.6
TC91923 weakly similar to GP|1946369|gb|AAB63087.1| unknown prot... 25 6.1
TC85306 similar to GP|21593320|gb|AAM65269.1 unknown {Arabidopsi... 24 7.9
TC85439 homologue to SP|P36181|HS80_LYCES Heat shock cognate pro... 24 7.9
TC79503 weakly similar to GP|21734794|gb|AAM76972.1 reduced vern... 24 7.9
TC79504 weakly similar to GP|21734794|gb|AAM76972.1 reduced vern... 24 7.9
>TC91678 similar to GP|21592347|gb|AAM64298.1 unknown {Arabidopsis
thaliana}, partial (50%)
Length = 533
Score = 125 bits (313), Expect = 3e-30
Identities = 69/95 (72%), Positives = 79/95 (82%)
Frame = +1
Query: 1 ELSELKKTLNVEVEQLRTEFQDLRTTLHQQQEDVTASLRNLGLQDVSADGKKAESQA*EA 60
ELS+LK+TLNVEVEQLR EFQDLRTTL QQQEDV ASLRN+ L+DVSAD K+A+SQ E
Sbjct: 115 ELSDLKQTLNVEVEQLRAEFQDLRTTLQQQQEDVNASLRNIRLEDVSADAKQAQSQ--ET 288
Query: 61 KIEEID*KEQQVLPEEDNSKDAEN*TGFSLEYLLL 95
KIEEI +EQ VLP+E+N+K AEN* F L YLLL
Sbjct: 289 KIEEIVKEEQPVLPKEENAKVAEN*AAFCLGYLLL 393
>BI310451 weakly similar to GP|7339698|dbj| Similar to Caenorhabditis elegans
chromosome V cosmid T10G3; Homo sapiens endosomal
protein P162, partial (10%)
Length = 755
Score = 28.5 bits (62), Expect = 0.42
Identities = 15/43 (34%), Positives = 24/43 (54%)
Frame = +2
Query: 2 LSELKKTLNVEVEQLRTEFQDLRTTLHQQQEDVTASLRNLGLQ 44
LSE LN EV LR+ + L +LH+ +E + +++G Q
Sbjct: 65 LSESNADLNEEVSFLRSRLECLEGSLHKAEEANMTTAKDIGKQ 193
>TC89256 similar to PIR|T47525|T47525 kinesin-related protein-like -
Arabidopsis thaliana, partial (27%)
Length = 865
Score = 25.0 bits (53), Expect = 4.6
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 2 LSELKKTLNVEVEQLRTEFQDLRTTLHQQQEDVTA 36
L +L K + +E + L DL+ +LH+Q+ +VTA
Sbjct: 475 LEDLFKGIALEADSL---LNDLQNSLHKQEANVTA 570
>TC91923 weakly similar to GP|1946369|gb|AAB63087.1| unknown protein
{Arabidopsis thaliana}, partial (14%)
Length = 1129
Score = 24.6 bits (52), Expect = 6.1
Identities = 21/81 (25%), Positives = 38/81 (45%), Gaps = 7/81 (8%)
Frame = +3
Query: 7 KTLNVEVEQLRTEFQDLRTTLHQQQEDVTASLRNLG-----LQDVSADGKKAESQA*EA- 60
K LNV ++ L+ E +L + +EDV + +G L D+ + + S EA
Sbjct: 246 KDLNVSLDNLKLEKDNLNVEVGSLKEDVNSRDGRIGSLDRHLNDLHIEHVQLISSLEEAC 425
Query: 61 -KIEEID*KEQQVLPEEDNSK 80
++EEI K + + + + K
Sbjct: 426 RQVEEIKTKAKNLEEQVERQK 488
>TC85306 similar to GP|21593320|gb|AAM65269.1 unknown {Arabidopsis
thaliana}, partial (24%)
Length = 876
Score = 24.3 bits (51), Expect = 7.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 49 DGKKAESQA*EAKIEEID*KEQQVLPEE 76
DGK+ + EAK ++D KE+Q+ E+
Sbjct: 182 DGKEFDVDTVEAKKRKLDGKEEQLAKEQ 265
>TC85439 homologue to SP|P36181|HS80_LYCES Heat shock cognate protein 80.
[Tomato] {Lycopersicon esculentum}, complete
Length = 2401
Score = 24.3 bits (51), Expect = 7.9
Identities = 10/41 (24%), Positives = 24/41 (58%)
Frame = +2
Query: 44 QDVSADGKKAESQA*EAKIEEID*KEQQVLPEEDNSKDAEN 84
+++S D + E + E K+EE+D ++++ ++ K+ N
Sbjct: 719 KEISDDEDEEEKKEEEGKVEEVDEEKEKEEKKKKKIKEVSN 841
>TC79503 weakly similar to GP|21734794|gb|AAM76972.1 reduced vernalization
response 1 {Arabidopsis thaliana}, partial (6%)
Length = 910
Score = 24.3 bits (51), Expect = 7.9
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -2
Query: 42 GLQDVSADGKKAESQA*EAKIEEID*K 68
GL + A GKK E *E +I EID*K
Sbjct: 147 GLLEK*ACGKKEEEAL*ENEIGEID*K 67
>TC79504 weakly similar to GP|21734794|gb|AAM76972.1 reduced vernalization
response 1 {Arabidopsis thaliana}, partial (26%)
Length = 695
Score = 24.3 bits (51), Expect = 7.9
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -2
Query: 42 GLQDVSADGKKAESQA*EAKIEEID*K 68
GL + A GKK E *E +I EID*K
Sbjct: 133 GLLEK*ACGKKEEEAL*ENEIGEID*K 53
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.331 0.144 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,888,661
Number of Sequences: 36976
Number of extensions: 13241
Number of successful extensions: 77
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of query: 107
length of database: 9,014,727
effective HSP length: 83
effective length of query: 24
effective length of database: 5,945,719
effective search space: 142697256
effective search space used: 142697256
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (23.9 bits)
Lotus: description of TM0360.9