BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0358.18
(152 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BQ141208 similar to PIR|S71477|S71 homeotic protein ovule-speci... 71 2e-13
TC77191 similar to GP|5031285|gb|AAD38148.1| beta-amylase {Prunu... 28 1.1
TC88817 weakly similar to GP|10039641|gb|AAG12204.1 Orf122 {Chlo... 27 2.4
TC79915 similar to GP|17979379|gb|AAL49915.1 unknown protein {Ar... 27 2.4
TC83314 similar to GP|10177135|dbj|BAB10425. gene_id:K2A18.28~pi... 27 2.4
BG648238 weakly similar to GP|20259057|gb unknown protein {Arabi... 26 5.4
AL381833 similar to GP|21629636|gb| PilO {Pseudomonas aeruginosa... 26 5.4
TC78581 similar to GP|20196943|gb|AAC14506.2 expressed protein {... 26 7.0
TC91234 similar to GP|2766715|gb|AAB95486.1| chromomethylase {Ar... 26 7.0
TC86853 similar to GP|20198043|gb|AAD21708.2 26S proteasome regu... 26 7.0
>BQ141208 similar to PIR|S71477|S71 homeotic protein ovule-specific -
Phalaenopsis sp., partial (19%)
Length = 661
Score = 70.9 bits (172), Expect = 2e-13
Identities = 38/80 (47%), Positives = 49/80 (60%)
Frame = +3
Query: 1 ATCTTCGGLTSLGEMSYDEQLMKLENARLREAIERISGIVAKYAGKSTTSYSSLLSQNYN 60
A+C CGG T++GEMS+DE ++LENARLRE I+RIS + AKY GK +YS N
Sbjct: 396 ASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISTMAAKYVGKPVVNYS-------N 554
Query: 61 QMPSSSRAFDLGVGNYGGDG 80
PS ++G N G G
Sbjct: 555 ISPSLPPRTEIGFXNPQGIG 614
>TC77191 similar to GP|5031285|gb|AAD38148.1| beta-amylase {Prunus armeniaca},
partial (93%)
Length = 1972
Score = 28.5 bits (62), Expect = 1.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 118 GHPLWVLSNNHNVETLNEEEYVREFPRGTGS 148
G+PLW L H+V T ++ Y F + GS
Sbjct: 996 GNPLWGLGGPHDVPTYDQSPYSNSFFKDGGS 1088
>TC88817 weakly similar to GP|10039641|gb|AAG12204.1 Orf122 {Chlorobium
tepidum}, partial (66%)
Length = 1211
Score = 27.3 bits (59), Expect = 2.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 42 KYAGKSTTSYSSLLSQNYNQMPSSSRAFDL 71
+Y G STT Y +L Q + Q P +R F +
Sbjct: 376 RYTGNSTTLYRTLACQFWMQFPG*ARGFHI 287
>TC79915 similar to GP|17979379|gb|AAL49915.1 unknown protein {Arabidopsis
thaliana}, partial (3%)
Length = 1090
Score = 27.3 bits (59), Expect = 2.4
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = -3
Query: 9 LTSLGEMSYDEQLMKLENARLREAIERISGIVAKYAGKSTTSYSSLLSQNYNQMPSSSRA 68
L+ G +SY +L KLE ARL I I + +TS L++ + +P++ R+
Sbjct: 1043 LSKSGHISYAIRLSKLEAARLFT*ITGIVSFAVNHPAVKSTSVGLLVALVLSLIPTALRS 864
>TC83314 similar to GP|10177135|dbj|BAB10425.
gene_id:K2A18.28~pir||T10240~strong similarity to
unknown protein {Arabidopsis thaliana}, partial (26%)
Length = 956
Score = 27.3 bits (59), Expect = 2.4
Identities = 14/47 (29%), Positives = 25/47 (52%)
Frame = +1
Query: 36 ISGIVAKYAGKSTTSYSSLLSQNYNQMPSSSRAFDLGVGNYGGDGND 82
I+ +A +A + + +QN N + +S+ G+GN G+GND
Sbjct: 733 ITSTMAIHAASKQPNEGNEANQNQNILANSNTPNGNGLGNGNGNGND 873
>BG648238 weakly similar to GP|20259057|gb unknown protein {Arabidopsis
thaliana}, partial (50%)
Length = 733
Score = 26.2 bits (56), Expect = 5.4
Identities = 24/81 (29%), Positives = 39/81 (47%), Gaps = 7/81 (8%)
Frame = +3
Query: 73 VGNYGGDGNDLLRSSLPPILADADKPIIVEVAVAAMEELVRLARVGHPLWVLSNNHNVET 132
+ NY G G + + LP +L +D P+IV V+ AA L + W S + E
Sbjct: 225 ITNYYG-GKETTEAFLP-LLQLSDSPVIVNVSSAA-----GLLKYISNEWARSVLDDTEN 383
Query: 133 LNEE-------EYVREFPRGT 146
L EE E++++F +G+
Sbjct: 384 LTEELIDEVLKEFLKDFKQGS 446
>AL381833 similar to GP|21629636|gb| PilO {Pseudomonas aeruginosa}, partial
(3%)
Length = 311
Score = 26.2 bits (56), Expect = 5.4
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = +1
Query: 60 NQMPSSSRAFDL--GVGNYGGDGND 82
NQ+PS +FDL G G+YG + N+
Sbjct: 82 NQIPSYDESFDLAPGFGSYGYENNN 156
>TC78581 similar to GP|20196943|gb|AAC14506.2 expressed protein {Arabidopsis
thaliana}, partial (81%)
Length = 1155
Score = 25.8 bits (55), Expect = 7.0
Identities = 18/43 (41%), Positives = 24/43 (54%)
Frame = +2
Query: 65 SSRAFDLGVGNYGGDGNDLLRSSLPPILADADKPIIVEVAVAA 107
SSRA +L V N+G D + SS P LAD + I+ + AA
Sbjct: 548 SSRAANLVVPNFGVDATSDVTSSGPVKLADLQR-ILSNIGPAA 673
>TC91234 similar to GP|2766715|gb|AAB95486.1| chromomethylase {Arabidopsis
arenosa}, partial (24%)
Length = 803
Score = 25.8 bits (55), Expect = 7.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 137 EYVREFPRGTGSKPFG 152
+Y F RGT SKPFG
Sbjct: 539 DYAMTFVRGTSSKPFG 586
>TC86853 similar to GP|20198043|gb|AAD21708.2 26S proteasome regulatory
subunit S2 (RPN1) {Arabidopsis thaliana}, partial (55%)
Length = 1738
Score = 25.8 bits (55), Expect = 7.0
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +1
Query: 53 SLLSQNYNQMPSSSRA---FDLGVGNYGGDGNDLLRSSLPPILAD--ADKPIIVEVAVA 106
+LL ++ SS+R LG+ Y G N+ LR L PIL+D A +I A+A
Sbjct: 253 ALLGDFIDKEDSSTRIGAIMGLGIA-YAGSQNEQLRYKLAPILSDPKASLDVIAFTAIA 426
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.313 0.132 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,424,817
Number of Sequences: 36976
Number of extensions: 49075
Number of successful extensions: 175
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of query: 152
length of database: 9,014,727
effective HSP length: 88
effective length of query: 64
effective length of database: 5,760,839
effective search space: 368693696
effective search space used: 368693696
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0358.18