TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0349b.2
         (400 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG585958 weakly similar to GP|22830897|dbj ORF-B {Oryza sativa (...    66  3e-11
TC84822 similar to GP|21554249|gb|AAM63324.1 unknown {Arabidopsi...    48  8e-06
TC83628 similar to GP|16604352|gb|AAL24182.1 AT5g12010/F14F18_18...    38  0.008
TC77781 weakly similar to GP|23237921|dbj|BAC16494. contains EST...    31  0.97
CA919923 weakly similar to GP|23237921|dbj contains ESTs D41667(...    30  1.3

>BG585958 weakly similar to GP|22830897|dbj ORF-B {Oryza sativa (japonica
           cultivar-group)}, partial (13%)
          Length = 769

 Score = 65.9 bits (159), Expect = 3e-11
 Identities = 35/68 (51%), Positives = 41/68 (59%), Gaps = 1/68 (1%)
 Frame = +2

Query: 42  SAPRG-RKHLSRDHAGANQRLIDDYFLNEPTYDDGIFRRRYRMQKHVFLRIVADLSSSDN 100
           S PR  R+++ R+     +RL +DYF   P Y D  FRRRYRM KHVFLRIV  L   D 
Sbjct: 461 SRPRSQRRNIERNREEGYKRLFNDYFSEAPVYMDE*FRRRYRMHKHVFLRIVEALGQHDE 640

Query: 101 YFTQRVDA 108
           YF   VDA
Sbjct: 641 YFQLTVDA 664


>TC84822 similar to GP|21554249|gb|AAM63324.1 unknown {Arabidopsis
          thaliana}, partial (47%)
          Length = 636

 Score = 47.8 bits (112), Expect = 8e-06
 Identities = 25/42 (59%), Positives = 29/42 (68%), Gaps = 2/42 (4%)
 Frame = +1

Query: 6  MDPPEF--DLEAYLEKSEREDTYILNRFRDRRNLILEDSAPR 45
          MDP +F  D+EAY  KSE E+ YILNRFR+RR  I E   PR
Sbjct: 40 MDPSKFRFDIEAYKRKSEIEERYILNRFRERRKQIEEGYTPR 165


>TC83628 similar to GP|16604352|gb|AAL24182.1 AT5g12010/F14F18_180
           {Arabidopsis thaliana}, partial (23%)
          Length = 773

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 27/106 (25%), Positives = 45/106 (41%)
 Frame = +2

Query: 68  NEPTYDDGIFRRRYRMQKHVFLRIVADLSSSDNYFTQRVDAAKKEGISPLAKCTTTMRML 127
           N   + D  FRR +RM K  F  I  +L SS      + +   ++ I    +    +  L
Sbjct: 431 NREDFPDDEFRRCFRMSKQTFNMICNELDSS----VTKKNTTLRDAIPVRQRVAVCIYRL 598

Query: 128 ANGVAADAVDEYIKIGETTTLECLRRFCKGIIRLYEQEYLRAPTQE 173
           A G     V +   +G +T  + +   C  I  +  Q++LR P +E
Sbjct: 599 ATGEPLRLVSKKFGLGISTCHKLVLEVCAAIKSVLMQKFLRWPDEE 736


>TC77781 weakly similar to GP|23237921|dbj|BAC16494. contains ESTs
           D41667(S4320) AU033165(S4320)~mucin-like protein,
           partial (22%)
          Length = 1150

 Score = 30.8 bits (68), Expect = 0.97
 Identities = 13/31 (41%), Positives = 19/31 (60%)
 Frame = +3

Query: 128 ANGVAADAVDEYIKIGETTTLECLRRFCKGI 158
           ANGVA    ++Y+ + ET    C+R + KGI
Sbjct: 741 ANGVALSKDEDYVVVCETWKFRCVRHWLKGI 833


>CA919923 weakly similar to GP|23237921|dbj contains ESTs D41667(S4320)
           AU033165(S4320)~mucin-like protein, partial (20%)
          Length = 774

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 13/31 (41%), Positives = 19/31 (60%)
 Frame = -2

Query: 128 ANGVAADAVDEYIKIGETTTLECLRRFCKGI 158
           ANGVA    ++Y+ + ET    CL+ + KGI
Sbjct: 668 ANGVALSKDEDYLVVCETWKFRCLKHWLKGI 576


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.345    0.152    0.506 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,702,429
Number of Sequences: 36976
Number of extensions: 207226
Number of successful extensions: 1383
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1383
length of query: 400
length of database: 9,014,727
effective HSP length: 98
effective length of query: 302
effective length of database: 5,391,079
effective search space: 1628105858
effective search space used: 1628105858
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 59 (27.3 bits)