BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0348.7
(778 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi... 298 5e-81
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported... 181 7e-46
BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2... 179 3e-45
BG644690 weakly similar to GP|18542179|gb putative pol protein {... 133 5e-41
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid... 157 2e-38
BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2... 139 3e-33
AJ502495 weakly similar to GP|18071369|g putative gag-pol polypr... 111 9e-25
TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-relate... 65 6e-23
TC89912 weakly similar to PIR|B84512|B84512 probable retroelemen... 104 1e-22
BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sati... 76 4e-20
BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vu... 96 5e-20
BG586293 weakly similar to PIR|E84473|E84 probable retroelement ... 95 1e-19
BE941052 weakly similar to PIR|B85188|B85 retrotransposon like p... 75 7e-14
TC92908 similar to GP|10140704|gb|AAG13538.1 putative gag-pol po... 75 1e-13
BG586273 weakly similar to PIR|F86470|F8 probable retroelement p... 73 5e-13
BI262917 weakly similar to GP|19920130|g Putative retroelement {... 70 4e-12
CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotia... 68 1e-11
TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret... 64 2e-10
BI272602 GP|11602812|db avenaIII {Gallus gallus}, partial (3%) 56 3e-10
BG587141 similar to PIR|H86461|H86 hypothetical protein AAF32440... 61 2e-09
>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
partial (9%)
Length = 675
Score = 298 bits (763), Expect = 5e-81
Identities = 140/226 (61%), Positives = 177/226 (77%), Gaps = 1/226 (0%)
Frame = +1
Query: 243 TRSKSGIIKPRLNPTLLLTHMEPTTVKQA-MRDDKWLQAMKEEYNALMSNGTWSLVPLPS 301
TR+K+G +KP++ LT P + + D +WLQAMK EY AL+ N TW LVPLP
Sbjct: 4 TRTKTGKLKPKV----FLTEPCPQDCENLPLSDPRWLQAMKTEYKALIDNKTWDLVPLPP 171
Query: 302 NRKAVGCKWIYRVKENPDGSINKYKARLVAKGYSQVQGFDYSETFSPVVKPITVRLILSL 361
++KA+GCKW+YRVKENPDGS+NK+KARLVAKG+SQ G DY+ETFSPV+KP+T+RLIL++
Sbjct: 172 HKKAIGCKWVYRVKENPDGSVNKFKARLVAKGFSQTLGCDYTETFSPVIKPVTIRLILTI 351
Query: 362 AISRGWPLQQIDVNNAFLNGVLEEEVYMTQPPGFEHKDKTLVCKLHKALYGLKQAPRAWF 421
AI+ W +QQID+NNAFLNG L+EEVYM+QP GFE +K+LVCKL+K+LYGLKQAPRAW+
Sbjct: 352 AITYKWEIQQIDINNAFLNGFLQEEVYMSQPQGFEAANKSLVCKLNKSLYGLKQAPRAWY 531
Query: 422 HRLKEVLLQFGFKASKCDPSLFTYNSPLGCIYMLIYVDDIILTGDS 467
L +QFGF S+CDPSL YN CIY+ IYVDDI++TG S
Sbjct: 532 EXLTSAQIQFGFTKSRCDPSLLIYNQNGACIYLXIYVDDILITGSS 669
>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
Arabidopsis thaliana, partial (17%)
Length = 618
Score = 181 bits (460), Expect = 7e-46
Identities = 89/185 (48%), Positives = 124/185 (66%), Gaps = 1/185 (0%)
Frame = -1
Query: 265 PTTVKQAMRDDKWLQAMKEEYNALMSNGTWSLVPLPSNRKAVGCKWIYRVKENPDGSINK 324
P + ++AM D +W +++ E A++ N TW LP +KAV +WI+ +K DGSI +
Sbjct: 558 PRSYEEAMEDKEWKESVGAEAGAMIKNDTWYESELPKGKKAVSSRWIFTIKYKADGSIER 379
Query: 325 YKARLVAKGYSQVQGFDYSETFSPVVKPITVRLILSLAISRGWPLQQIDVNNAFLNGVLE 384
K RLVA+G++ G DY ETF+PV K T+R++LSLA++ GW L Q+DV NAFL G LE
Sbjct: 378 KKTRLVARGFTLTYGEDYIETFAPVAKLHTIRIVLSLAVNLGWGLWQMDVKNAFLQGELE 199
Query: 385 EEVYMTQPPGFEHKDKT-LVCKLHKALYGLKQAPRAWFHRLKEVLLQFGFKASKCDPSLF 443
+EVYM PPG EH K V +L KA+YGLKQ+PRAW+++L L GF+ S+ D +LF
Sbjct: 198 DEVYMYPPPGLEHLVKRGNVLRLKKAIYGLKQSPRAWYNKLSTTLNGRGFRKSELDHTLF 19
Query: 444 TYNSP 448
T +P
Sbjct: 18 TLTTP 4
>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (10%)
Length = 744
Score = 179 bits (455), Expect = 3e-45
Identities = 101/246 (41%), Positives = 139/246 (56%)
Frame = +2
Query: 401 TLVCKLHKALYGLKQAPRAWFHRLKEVLLQFGFKASKCDPSLFTYNSPLGCIYMLIYVDD 460
T VC+L K++YGLKQA R W+ +L E L+ FG+ S D SLFT +L+YVDD
Sbjct: 14 TKVCELQKSIYGLKQASRQWYSKLSESLISFGYLQSSSDFSLFTKFKDSSFTTLLVYVDD 193
Query: 461 IILTGDSMVLIQQLTAKLHSIFALKQLGQLDYFLGVQVTHLANGSLLLNQTKYINDLLTK 520
I+L G+ + IQ + L F +K LG L YFLG++V G +LLNQ KY +LL
Sbjct: 194 IVLAGNDISEIQHVKCFLIDRFKIKDLGSLRYFLGLEVARSKQG-ILLNQRKYTLELLED 370
Query: 521 VNMADAAPISTPMQFGAKLTKHGGTSLHDPTEYRSVVGALQYATITRPEISYAVNKVCQF 580
TP KL +D T+YR ++G L Y T TRP+IS+AV ++ QF
Sbjct: 371 SGNLAVKSTLTPYDISLKLHNSDSPLYNDETQYRRLIGKLIYLTTTRPDISFAVQQLSQF 550
Query: 581 LSDPHEEHWKAVKRILRYLKGTITHGVLLQPCSMTQPLPLLAFCDADWGSDPDDRRSTSG 640
+S P + H++A R+L+YLK G+ S T L L +F D+DW + P R+S +G
Sbjct: 551 VSKPQQVHYQAAIRVLQYLKTAPAKGLFY---SATSNLKLSSFADSDWATCPTTRKSVTG 721
Query: 641 SCVFLG 646
VFLG
Sbjct: 722 YWVFLG 739
>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
partial (22%)
Length = 629
Score = 133 bits (334), Expect(2) = 5e-41
Identities = 66/141 (46%), Positives = 95/141 (66%), Gaps = 1/141 (0%)
Frame = -2
Query: 322 INKYKARLVAKGYSQVQGFDYSETFSPVVKPITVRLILSLAISRGWPLQQIDVNNAFLNG 381
I + K++LV +GY+Q +G DY E FSPV + +R++++ A G+ L Q+DV +AF+NG
Sbjct: 424 ITRNKSKLVVQGYNQKEGIDYDEAFSPVARMEAIRILIAFAAFMGFKLYQMDVKSAFING 245
Query: 382 VLEEEVYMTQPPGFEHKD-KTLVCKLHKALYGLKQAPRAWFHRLKEVLLQFGFKASKCDP 440
L+EEV++ QPPGFE + V +L+K LYGLKQAPRAW+ RL + LL+ GFK K D
Sbjct: 244 DLKEEVFVKQPPGFEDAEVPNHVFRLNKTLYGLKQAPRAWYERLSKFLLKNGFKRGKIDN 65
Query: 441 SLFTYNSPLGCIYMLIYVDDI 461
+LF + + +YVDDI
Sbjct: 64 TLFLLKRE*ELLIIQVYVDDI 2
Score = 53.9 bits (128), Expect(2) = 5e-41
Identities = 20/56 (35%), Positives = 35/56 (61%)
Frame = -3
Query: 260 LTHMEPTTVKQAMRDDKWLQAMKEEYNALMSNGTWSLVPLPSNRKAVGCKWIYRVK 315
++ +EP VK+A+RD W+ +M+EE + + W LVP P + +G +W++R K
Sbjct: 600 ISSIEPKNVKEALRDADWINSMQEELHQFERSKVWYLVPRPEGKTVIGTRWVFRNK 433
>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
thaliana}, partial (14%)
Length = 778
Score = 157 bits (396), Expect = 2e-38
Identities = 92/258 (35%), Positives = 144/258 (55%), Gaps = 8/258 (3%)
Frame = +3
Query: 255 NPTLLLTHMEPTTVKQAMRDDKWLQAMKEEYNALMSNGTWSLVPLPSNRKAVGCKWIYRV 314
N +L +PTT ++A++ +KW +M E A N TW L L S K +G KWI++
Sbjct: 12 NLGMLTMTSDPTTFEEAVKSEKWRASMNNEMEATERNNTWELTDLRSGAKTIGLKWIFKT 191
Query: 315 KENPDGSINKYKARLVAKGYSQVQGFDYSETFSPVVKPITVRLILSLAISRGWPLQQIDV 374
K N +G I KYKARLVAKGYSQ G DY+E F+PV + T+R++++LA QI
Sbjct: 192 KLNENGEIEKYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALA-------AQIKR 350
Query: 375 NNAFLNGVLEE----EVYMTQPPGFEHK---DKTLVCKLHKALYGLKQAPRAWFHRLKEV 427
+ ++ + + E M + H+ + + ++ +ALYGLKQAPRAW+ R++
Sbjct: 351 DGVCIS*M*KAHSCMEN*MRKFLLINHRVM*RRVIS*RVKRALYGLKQAPRAWYSRIEAY 530
Query: 428 LLQFGFKASKCDPSLFTYNSPLGCIYML-IYVDDIILTGDSMVLIQQLTAKLHSIFALKQ 486
+ GF+ + +LF S G I ++ +YVDD+I G+ + ++ + F +
Sbjct: 531 FTKEGFEKCPYEHTLFVKLSEGGKILIISLYVDDLIFIGNDENMFEEFKKSMKKEFNMSD 710
Query: 487 LGQLDYFLGVQVTHLANG 504
LG++ YFLGV+VT G
Sbjct: 711 LGKMHYFLGVEVTQNEKG 764
>BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2O9.150 -
Arabidopsis thaliana, partial (11%)
Length = 732
Score = 139 bits (351), Expect = 3e-33
Identities = 77/209 (36%), Positives = 119/209 (56%), Gaps = 3/209 (1%)
Frame = +1
Query: 510 QTKYINDLLTKVNMADAAPISTPMQFGAKLTKHGGTSLHDPTEYRSVVGALQYATITRPE 569
Q KY+ DLL + M + P+ KL K D T+Y+ +VG L Y TRP+
Sbjct: 40 QRKYVTDLLERFGMEKSNLSRNPIAPRCKLIKDENGVKVDATKYKQIVGCLMYLAATRPD 219
Query: 570 ISYAVNKVCQFLSDPHEEHWKAVKRILRYLKGTITHGVLLQPCSMTQPLPLLAFCDADWG 629
+ Y ++ + +F++ P E H AVKR+LRYL GTI G++ + + L A+ D+D+
Sbjct: 220 LMYVLSLISRFMNCPTELHMHAVKRVLRYLNGTINLGIMYKRNGSEK---LEAYTDSDYA 390
Query: 630 SDPDDRRSTSGSCVFLGPNLISWTAKKQTLVARSSTEAEYRSLANTTAELLWVESLLTEL 689
D DDR+STSG L +SW++KKQ +V S+T+AE+ + A + +W+ +L
Sbjct: 391 GDLDDRKSTSGYVFMLSSGAVSWSSKKQPVVTLSTTKAEFIAAAFCACQSVWMRRVLE-- 564
Query: 690 KIAFTVP---TVLCDNMSTVLLTHNPILH 715
K+ +T T+ CDN ST+ L+ NP+LH
Sbjct: 565 KLGYTQSGSITMYCDNNSTIKLSKNPVLH 651
>AJ502495 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
sativa}, partial (9%)
Length = 542
Score = 111 bits (278), Expect = 9e-25
Identities = 53/147 (36%), Positives = 87/147 (59%), Gaps = 1/147 (0%)
Frame = +2
Query: 626 ADWGSDPDDRRSTSGSCVFLGPNLISWTAKKQTLVARSSTEAEYRSLANTTAELLWVESL 685
+DW D + R+STSG LG ISW++KKQ +VA S+ EAEY + + + +W+ +
Sbjct: 2 SDWAGDTETRKSTSGYAFHLGTGAISWSSKKQPVVAFSTAEAEYIASTSCATQTVWLRRI 181
Query: 686 LTELKIAFTVPT-VLCDNMSTVLLTHNPILHTRTKHMEMDLFFVREKVQAKSLVVQHVPS 744
L + PT + CDN S + L+ NP+ H R+KH+++ +RE + K +V+++ P+
Sbjct: 182 LEVMHHEQNTPTKIYCDNKSAIALSKNPVFHGRSKHIDIQFHKIRELIAEKEVVIEYCPT 361
Query: 745 EHQRADIFTKALSPTRFLLMRDKLNVV 771
E + ADIFTK L F ++ L ++
Sbjct: 362 EEKIADIFTKPLKIESFYKLKKMLGMM 442
>TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
(EC 3.4.23.-);, partial (7%)
Length = 705
Score = 64.7 bits (156), Expect(2) = 6e-23
Identities = 32/102 (31%), Positives = 55/102 (53%)
Frame = +3
Query: 671 SLANTTAELLWVESLLTELKIAFTVPTVLCDNMSTVLLTHNPILHTRTKHMEMDLFFVRE 730
SL E +W++ L+ EL TV CD+ S + + NP H+RTKH+ + FVRE
Sbjct: 228 SLPQACKEAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVRE 407
Query: 731 KVQAKSLVVQHVPSEHQRADIFTKALSPTRFLLMRDKLNVVD 772
V+ S+ +Q + + AD TK+++ +F+ R +++
Sbjct: 408 VVEEGSVDMQKIHTNDNLADAMTKSINTDKFIWCRSSYGLLE 533
Score = 61.6 bits (148), Expect(2) = 6e-23
Identities = 35/78 (44%), Positives = 48/78 (60%)
Frame = +1
Query: 592 VKRILRYLKGTITHGVLLQPCSMTQPLPLLAFCDADWGSDPDDRRSTSGSCVFLGPNLIS 651
VKRI+RY+KGT GV + C L + + D+D+ D D R+ST+G L +S
Sbjct: 1 VKRIMRYIKGT--SGVAV--CFGGSELTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVS 168
Query: 652 WTAKKQTLVARSSTEAEY 669
W +K QT+VA S+TEAEY
Sbjct: 169 WLSKLQTVVALSTTEAEY 222
>TC89912 weakly similar to PIR|B84512|B84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(10%)
Length = 814
Score = 104 bits (259), Expect = 1e-22
Identities = 52/165 (31%), Positives = 95/165 (57%)
Frame = +1
Query: 590 KAVKRILRYLKGTITHGVLLQPCSMTQPLPLLAFCDADWGSDPDDRRSTSGSCVFLGPNL 649
+A+K +L+YL ++ + + + L + DAD+ + D R+S SG L
Sbjct: 1 QALKWVLKYLNESLKSSLKYTKAAQEEDA-LEGYVDADYAGNVDTRKSLSGFVFTLYGTT 177
Query: 650 ISWTAKKQTLVARSSTEAEYRSLANTTAELLWVESLLTELKIAFTVPTVLCDNMSTVLLT 709
ISW A +Q++V S+T+AEY + + +W++ ++ EL I + CD+ S + L
Sbjct: 178 ISWKANQQSVVTLSTTQAEYIAFVEGVKDAIWLKGMIGELGITQEYVKIHCDSQSAIHLA 357
Query: 710 HNPILHTRTKHMEMDLFFVREKVQAKSLVVQHVPSEHQRADIFTK 754
++ + H RTKH+++ L F+R+ +++K +VV+ + SE AD+FTK
Sbjct: 358 NHQVYHERTKHIDIRLHFIRDMIESKEIVVEKMASEENPADVFTK 492
>BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 503
Score = 76.3 bits (186), Expect(2) = 4e-20
Identities = 45/119 (37%), Positives = 67/119 (55%), Gaps = 1/119 (0%)
Frame = +1
Query: 415 QAPRAWFHRLKEVLLQFGFKASKCDPSLFT-YNSPLGCIYMLIYVDDIILTGDSMVLIQQ 473
Q+PR WF R V+ +FG+ + D ++F ++S + +++YVDDI LTGD I++
Sbjct: 1 QSPRDWFDRFT*VVKKFGYIQCQTDHAMFIKHSSTVKKAILIVYVDDIFLTGDHGK*IKR 180
Query: 474 LTAKLHSIFALKQLGQLDYFLGVQVTHLANGSLLLNQTKYINDLLTKVNMADAAPISTP 532
L L F +K LG L YFLG++V GS ++Q KY+ DLL + M I P
Sbjct: 181 LKNLLAEEFEIKDLGNLKYFLGMEVARWKKGS-SISQRKYVLDLLKETRMIGCKTIRDP 354
Score = 40.4 bits (93), Expect(2) = 4e-20
Identities = 22/57 (38%), Positives = 30/57 (52%)
Frame = +2
Query: 525 DAAPISTPMQFGAKLTKHGGTSLHDPTEYRSVVGALQYATITRPEISYAVNKVCQFL 581
D P TPM KL +L D Y+ +VG L Y + TRP+IS+ V + QF+
Sbjct: 332 DVKPSETPMDATVKLGTLDNGTLVDKGRYQRLVGKLIYLSHTRPDISFVVCTMSQFM 502
>BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vulgaris},
partial (13%)
Length = 494
Score = 95.9 bits (237), Expect = 5e-20
Identities = 50/124 (40%), Positives = 75/124 (60%)
Frame = +1
Query: 567 RPEISYAVNKVCQFLSDPHEEHWKAVKRILRYLKGTITHGVLLQPCSMTQPLPLLAFCDA 626
RP+I Y+V+ + +F+ DP + H A RILRY++GT+ +G+L + ++ L+ + D+
Sbjct: 121 RPDICYSVSVISKFMHDPRKPHLIAANRILRYVRGTMEYGLLFPYGAKSEVYELICYSDS 300
Query: 627 DWGSDPDDRRSTSGSCVFLGPNLISWTAKKQTLVARSSTEAEYRSLANTTAELLWVESLL 686
DW DRRSTSG ISW KKQ + A SS EAEY + T + LW++S++
Sbjct: 301 DWCG---DRRSTSGYVFKFNDAAISWCTKKQPITALSSYEAEYIAGTFATFQALWLDSVI 471
Query: 687 TELK 690
ELK
Sbjct: 472 KELK 483
>BG586293 weakly similar to PIR|E84473|E84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(7%)
Length = 763
Score = 94.7 bits (234), Expect = 1e-19
Identities = 46/89 (51%), Positives = 62/89 (68%)
Frame = +2
Query: 293 TWSLVPLPSNRKAVGCKWIYRVKENPDGSINKYKARLVAKGYSQVQGFDYSETFSPVVKP 352
T LV P+ K +G +WIY++K N DG++ KYKARLVAKGY + QG D+ E F+PVV+
Sbjct: 56 TLKLVKKPTGVKPIGLRWIYKIKRNEDGTLIKYKARLVAKGYVKQQGIDFDEVFAPVVRI 235
Query: 353 ITVRLILSLAISRGWPLQQIDVNNAFLNG 381
T+ L+L+LA + G + IDV AFLNG
Sbjct: 236 ETI*LLLALAATNGC*IHHIDVKIAFLNG 322
>BE941052 weakly similar to PIR|B85188|B85 retrotransposon like protein
[imported] - Arabidopsis thaliana, partial (4%)
Length = 480
Score = 75.5 bits (184), Expect = 7e-14
Identities = 36/73 (49%), Positives = 48/73 (65%)
Frame = +2
Query: 700 CDNMSTVLLTHNPILHTRTKHMEMDLFFVREKVQAKSLVVQHVPSEHQRADIFTKALSPT 759
CD +S LTHNP+ H+R KH+ +D+ FVR+ VQ L VQHV + Q AD TK LS +
Sbjct: 29 CDYLSATYLTHNPVYHSRMKHISIDIHFVRDLVQQGKLKVQHVCTVDQLADCLTKPLSKS 208
Query: 760 RFLLMRDKLNVVD 772
R L+R+K+ V D
Sbjct: 209 RHQLLRNKIGVTD 247
>TC92908 similar to GP|10140704|gb|AAG13538.1 putative gag-pol polyprotein
{Oryza sativa}, partial (1%)
Length = 638
Score = 75.1 bits (183), Expect = 1e-13
Identities = 43/125 (34%), Positives = 71/125 (56%)
Frame = +2
Query: 251 KPRLNPTLLLTHMEPTTVKQAMRDDKWLQAMKEEYNALMSNGTWSLVPLPSNRKAVGCKW 310
K R + + +++EP QA + +WL AM++E L N T +L PL +K V C+
Sbjct: 239 KHRASLAAITSNIEPKNYVQAAQ*QEWLAAMEQEIQVLEENNTSTLEPLREGKKWVDCRP 418
Query: 311 IYRVKENPDGSINKYKARLVAKGYSQVQGFDYSETFSPVVKPITVRLILSLAISRGWPLQ 370
+Y++ +G I KYKA+LVAK + QV+G D+ + K R +L++A ++G L
Sbjct: 419 VYKIIHKANGEIEKYKAQLVAKDFVQVEGEDF*D-LCLSNKDDNCRCLLTIAAAKG*QLH 595
Query: 371 QIDVN 375
+DV+
Sbjct: 596 LMDVS 610
>BG586273 weakly similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (7%)
Length = 705
Score = 72.8 bits (177), Expect = 5e-13
Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Frame = -2
Query: 34 ATYLINRMSTTTLQGASPYFKLYGNHPDFKSLKIFGSACFPFLRPYNSNKLSLHSKECVF 93
A YLINR+ T L+ +P+ L P +++FG C+ + NKL S++ +F
Sbjct: 704 ACYLINRIPTRVLKDQAPFEVLNQRKPSLTYMRVFGCLCYVLVPGELRNKLEARSRKAMF 525
Query: 94 LGYSSSHKGYKCLD-QSGRIYVSKDVLFHEHRFPY 127
+GYS++ KGYKC D ++ R+ VS+DV F E R Y
Sbjct: 524 IGYSTTQKGYKCYDPEARRVLVSRDVKFIEERGYY 420
>BI262917 weakly similar to GP|19920130|g Putative retroelement {Oryza
sativa} [Oryza sativa (japonica cultivar-group)],
partial (8%)
Length = 426
Score = 69.7 bits (169), Expect = 4e-12
Identities = 37/105 (35%), Positives = 53/105 (50%)
Frame = +1
Query: 3 ERKHRHIVETGLALLSHASMPLHFWDHAFLTATYLINRMSTTTLQGASPYFKLYGNHPDF 62
ER +R ++E A+L A M FW A TA Y+INR +T + +P G D+
Sbjct: 109 ERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTVIDLKTPMEMWKGKPVDY 288
Query: 63 KSLKIFGSACFPFLRPYNSNKLSLHSKECVFLGYSSSHKGYKCLD 107
SL +FG + KL S++C+FLGY+ + KGY D
Sbjct: 289 SSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYXLWD 423
>CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotiana tabacum},
partial (7%)
Length = 780
Score = 68.2 bits (165), Expect = 1e-11
Identities = 37/90 (41%), Positives = 53/90 (58%)
Frame = -2
Query: 346 FSPVVKPITVRLILSLAISRGWPLQQIDVNNAFLNGVLEEEVYMTQPPGFEHKDKTLVCK 405
F P+VK T+ +LS+ L+ +DV AFL G L E++YM QP GF + +V K
Sbjct: 554 FVPIVKLNTIMFLLSIVAIENLYLE*LDVKTAFLRGDLVEDIYMHQPEGFS*EVGKMVGK 375
Query: 406 LHKALYGLKQAPRAWFHRLKEVLLQFGFKA 435
L K++YGLKQ PR LK + + GF++
Sbjct: 374 LKKSMYGLKQGPRQCI*SLKALCTRKGFRS 285
>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
{Oryza sativa} [Oryza sativa (japonica cultivar-group)],
partial (10%)
Length = 823
Score = 64.3 bits (155), Expect = 2e-10
Identities = 43/125 (34%), Positives = 67/125 (53%), Gaps = 5/125 (4%)
Frame = +1
Query: 3 ERKHRHIVETGLALLSHASMP--LHFWDHAFLTATYLINRMSTTTLQGASPYFKLYGNHP 60
ER R ++E +LS+A + W A TA +L+NR + L P GN
Sbjct: 412 ERMIRTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLV 591
Query: 61 DFKSLKIFGSACFPFLRPYNSNKLSLHSKECVFLGYSSSHKGYK--CLD-QSGRIYVSKD 117
D+ +L+IFG + + N KL+ + EC+FL Y+S KGY+ C D +S ++ +S+D
Sbjct: 592 DYSNLRIFGCPAYALV---NDGKLAPRAGECIFLSYASESKGYRLWCSDPKSQKLILSRD 762
Query: 118 VLFHE 122
V F+E
Sbjct: 763 VTFNE 777
>BI272602 GP|11602812|db avenaIII {Gallus gallus}, partial (3%)
Length = 488
Score = 55.8 bits (133), Expect(2) = 3e-10
Identities = 43/136 (31%), Positives = 63/136 (45%), Gaps = 8/136 (5%)
Frame = +1
Query: 182 ASDLQSQPSPIPTGSGLASTSQPAEHASSESAHQEMATSSGVHAASSASTVAVPVNAHPM 241
A Q+ P + +A Q + AS S T+S T A P N H
Sbjct: 1 AESTQTSSPSSPNSNEVAQNIQISSPASPTSNELANITTSPTPPPPPPPT-ARPHNNHTT 177
Query: 242 Q-----TRSKSGIIKP--RLNPTLL-LTHMEPTTVKQAMRDDKWLQAMKEEYNALMSNGT 293
TRS++ I+K +LN + L +EP+ + QA+RD W M++E++AL +N T
Sbjct: 178 NVGGIITRSQNNIVKTIKKLNLHVRPLCPIEPSNITQALRDHDWRSIMQDEFDALQNNNT 357
Query: 294 WSLVPLPSNRKAVGCK 309
W LV + VGCK
Sbjct: 358 WDLVSRSFAQNLVGCK 405
Score = 27.3 bits (59), Expect(2) = 3e-10
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +2
Query: 310 WIYRVKENPDGS 321
W++R+K NPDGS
Sbjct: 407 WVFRIKRNPDGS 442
>BG587141 similar to PIR|H86461|H86 hypothetical protein AAF32440.1
[imported] - Arabidopsis thaliana, partial (20%)
Length = 731
Score = 60.8 bits (146), Expect = 2e-09
Identities = 34/96 (35%), Positives = 52/96 (53%), Gaps = 1/96 (1%)
Frame = +3
Query: 678 ELLWVESLLTELKIAFTVPTVL-CDNMSTVLLTHNPILHTRTKHMEMDLFFVREKVQAKS 736
+ +W++ LL+E+ V+ DN S + LT NP+ H R H+ F+RE V+
Sbjct: 135 QAMWLQDLLSEVTWEPCEEVVIRIDNQSVIALTRNPVFHGRGNHIHKRYHFIRECVENGQ 314
Query: 737 LVVQHVPSEHQRADIFTKALSPTRFLLMRDKLNVVD 772
+ V+HVP E RA I TKAL F +R + ++D
Sbjct: 315 VEVEHVPGEKHRAYI*TKALGRIIFREIRYYIGMID 422
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.319 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,694,843
Number of Sequences: 36976
Number of extensions: 423777
Number of successful extensions: 3191
Number of sequences better than 10.0: 192
Number of HSP's better than 10.0 without gapping: 2829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3052
length of query: 778
length of database: 9,014,727
effective HSP length: 104
effective length of query: 674
effective length of database: 5,169,223
effective search space: 3484056302
effective search space used: 3484056302
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0348.7