BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0348.16
(376 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG646599 108 3e-24
BE943429 77 1e-14
AW693426 homologue to GP|23307580|dbj similar to serine/threonin... 50 1e-06
TC76523 homologue to PIR|T09648|T09648 nucleolin homolog nuM1 - ... 47 9e-06
TC82474 47 1e-05
TC86848 similar to GP|10177413|dbj|BAB10544. fibrillarin-like {A... 47 2e-05
BM814132 weakly similar to OMNI|MT3615.1 PE_PGRS family protein ... 46 2e-05
BQ144482 similar to GP|6523547|emb| hydroxyproline-rich glycopro... 46 2e-05
TC83089 46 3e-05
TC79934 similar to GP|20259633|gb|AAM14173.1 putative GAR1 prote... 46 3e-05
TC78850 homologue to GP|10177413|dbj|BAB10544. fibrillarin-like ... 45 5e-05
BQ141909 weakly similar to GP|14253159|emb VMP3 protein {Volvox ... 45 6e-05
TC76556 similar to PIR|S71779|S71779 glycine-rich RNA-binding pr... 44 8e-05
TC76561 similar to PIR|S71779|S71779 glycine-rich RNA-binding pr... 44 8e-05
TC76557 similar to PIR|S71779|S71779 glycine-rich RNA-binding pr... 44 8e-05
AL372330 similar to GP|21322752|dbj cold shock protein-1 {Tritic... 43 2e-04
BQ151059 similar to GP|7291525|gb|A CG9888-PA {Drosophila melano... 42 3e-04
TC78179 weakly similar to GP|7211427|gb|AAF40306.1| RNA helicase... 42 5e-04
BM814145 homologue to GP|21322711|em pherophorin-dz1 protein {Vo... 42 5e-04
BQ144502 weakly similar to GP|6523547|emb hydroxyproline-rich gl... 41 7e-04
>BG646599
Length = 711
Score = 108 bits (270), Expect = 3e-24
Identities = 59/132 (44%), Positives = 83/132 (62%), Gaps = 3/132 (2%)
Frame = +3
Query: 94 LGQSLRSGVKQMGGYTSLLLAWVFEHFP---DRLVRRYVSPDYIEDQARACRWKESRSGH 150
LG KQ+GGY +LL W++E+FP +R+ R + ARA RWK R G+
Sbjct: 6 LGNGSMMSCKQLGGYATLLQCWIYEYFPTLGNRVENRVACDEPGMGVARAMRWKYPR-GN 182
Query: 151 ARLDERRVLLDDLTEDDVIWTPYEAHREWRQRDERALFSGYIQCPYPPAVRPHLPERVMR 210
++D+ R ++DDLT +DVIW P+++HR+ D+ L SGYI+ + V P+LPER +R
Sbjct: 183 LKVDQIRRMIDDLTPNDVIWCPFDSHRQVIPFDDICLSSGYIR--WCSNVVPYLPERCLR 356
Query: 211 QFGYIQTIPRHP 222
QFGYIQ IPR P
Sbjct: 357 QFGYIQYIPRPP 392
>BE943429
Length = 384
Score = 77.0 bits (188), Expect = 1e-14
Identities = 47/119 (39%), Positives = 65/119 (54%), Gaps = 4/119 (3%)
Frame = +2
Query: 161 DDLTEDDVIWTPYEAHREWRQRDERALFSGYIQCPYPPAVRPHLPERVMRQFGYIQTIPR 220
D + VIW PYE R+ + +SG+I VR HLPERV+RQ+GY+QT+PR
Sbjct: 2 DSMEHCHVIWRPYEHRRDVTPFQDVCWYSGWIMAGKQKMVR-HLPERVLRQYGYVQTVPR 178
Query: 221 HPSEMDRSSAAEVVDAAFADYVSYLF--PKGDPVIEE--GQAVGGYMDWYAIVSHCFII 275
P+ + + AEV A F V L +GDPV E+ + GY+ W+ VSH I+
Sbjct: 179 PPTTIVPLAPAEVATAFFEFVVHVLSQQDRGDPVPEDEWWKHSDGYIKWFYRVSHPLIV 355
>AW693426 homologue to GP|23307580|dbj similar to serine/threonine
phosphatase PP7 {Oryza sativa (japonica
cultivar-group)}, partial (2%)
Length = 209
Score = 50.4 bits (119), Expect = 1e-06
Identities = 26/69 (37%), Positives = 42/69 (60%)
Frame = +1
Query: 44 YLMHLVGATLFADKSGGHSFSARWIDMFQNLERVSEFAWGAMALATLYDQLGQSLRSGVK 103
+L+ LVG TLF+DKS + +++ F++L+ +AWG ALA LYD L + +K
Sbjct: 1 FLLCLVGCTLFSDKST-FVVNVAYLEFFRDLDSCGGYAWGVAALAHLYDNLRYASFHHMK 177
Query: 104 QMGGYTSLL 112
+ GY +L+
Sbjct: 178 SISGYLTLI 204
>TC76523 homologue to PIR|T09648|T09648 nucleolin homolog nuM1 - alfalfa,
partial (69%)
Length = 1615
Score = 47.4 bits (111), Expect = 9e-06
Identities = 22/34 (64%), Positives = 24/34 (69%), Gaps = 2/34 (5%)
Frame = +3
Query: 339 GGLG--AGGRAGGRSGGREGGGAGAMGGRRGRGG 370
GG G +GGR GGR GGR+ GG G GGR GRGG
Sbjct: 1173 GGFGGRSGGRGGGRFGGRDSGGRGGRGGRGGRGG 1274
Score = 47.4 bits (111), Expect = 9e-06
Identities = 26/39 (66%), Positives = 27/39 (68%)
Frame = +3
Query: 337 GRGGLGAGGRAGGRSGGREGGGAGAMGGRRGRGGRRGRG 375
GR G G GGR+GGR GGR GG GGR GRGGR GRG
Sbjct: 1164 GRSG-GFGGRSGGRGGGRFGGRDS--GGRGGRGGRGGRG 1271
Score = 44.3 bits (103), Expect = 8e-05
Identities = 24/49 (48%), Positives = 28/49 (56%)
Frame = +3
Query: 327 AGTQGIAYAAGRGGLGAGGRAGGRSGGREGGGAGAMGGRRGRGGRRGRG 375
+G +G +G G G GGR+GG GGR GG G G R GGR GRG
Sbjct: 1110 SGGRGGGGRSGGGRFGGGGRSGG-FGGRSGGRGGGRFGGRDSGGRGGRG 1253
Score = 29.6 bits (65), Expect = 2.0
Identities = 19/39 (48%), Positives = 20/39 (50%)
Frame = +3
Query: 335 AAGRGGLGAGGRAGGRSGGREGGGAGAMGGRRGRGGRRG 373
A R G+GGR GG GR GGG R G GGR G
Sbjct: 1086 AKPRDSQGSGGRGGG---GRSGGG------RFGGGGRSG 1175
>TC82474
Length = 992
Score = 47.0 bits (110), Expect = 1e-05
Identities = 31/98 (31%), Positives = 48/98 (48%)
Frame = -2
Query: 131 PDYIEDQARACRWKESRSGHARLDERRVLLDDLTEDDVIWTPYEAHREWRQRDERALFSG 190
P Y ED+ A R+ + GH + LD + DDV + Y+ H + D+ + F
Sbjct: 889 PKYTEDRPHATRFSLAM-GHKSPNNYMTFLDRVEVDDVSFNQYDFHHQTCPFDDIS*FFR 713
Query: 191 YIQCPYPPAVRPHLPERVMRQFGYIQTIPRHPSEMDRS 228
+I+C HL E VM+ +G+IQ+ RHP R+
Sbjct: 712 WIECDRKMNYH-HLLELVMK*YGHIQSTLRHPLSRTRA 602
>TC86848 similar to GP|10177413|dbj|BAB10544. fibrillarin-like {Arabidopsis
thaliana}, partial (92%)
Length = 1250
Score = 46.6 bits (109), Expect = 2e-05
Identities = 34/73 (46%), Positives = 38/73 (51%), Gaps = 11/73 (15%)
Frame = +3
Query: 314 ALTKRALRILQDLA------GTQGIAYAAGRGGLGAGGRAGGRSG-GREGGGAG----AM 362
+LT ++LR L A G G + GRGG GGR GGR G G GG G A
Sbjct: 15 SLTHQSLRNLSTTAMAPPVRGRGGGGFRGGRGG-DRGGRGGGRGGFGGRGGDRGTPFKAR 191
Query: 363 GGRRGRGGRRGRG 375
GG RG GGR GRG
Sbjct: 192 GGGRGGGGRGGRG 230
Score = 40.4 bits (93), Expect = 0.001
Identities = 20/33 (60%), Positives = 20/33 (60%)
Frame = +3
Query: 328 GTQGIAYAAGRGGLGAGGRAGGRSGGREGGGAG 360
GT A GRGG G GGR GGR GGR GG G
Sbjct: 171 GTPFKARGGGRGGGGRGGRGGGRGGGRGGGMKG 269
Score = 39.3 bits (90), Expect = 0.003
Identities = 20/37 (54%), Positives = 22/37 (59%)
Frame = +3
Query: 328 GTQGIAYAAGRGGLGAGGRAGGRSGGREGGGAGAMGG 364
G +G + A GG G GGR GGR GGR GG G M G
Sbjct: 162 GDRGTPFKARGGGRGGGGR-GGRGGGRGGGRGGGMKG 269
Score = 33.1 bits (74), Expect = 0.18
Identities = 19/48 (39%), Positives = 20/48 (41%), Gaps = 13/48 (27%)
Frame = +3
Query: 337 GRGGLGA-------------GGRAGGRSGGREGGGAGAMGGRRGRGGR 371
GRGG G GGR GG GGR GG G GG G +
Sbjct: 135 GRGGFGGRGGDRGTPFKARGGGRGGGGRGGRGGGRGGGRGGGMKGGSK 278
>BM814132 weakly similar to OMNI|MT3615.1 PE_PGRS family protein
{Mycobacterium tuberculosis CDC1551}, partial (7%)
Length = 164
Score = 46.2 bits (108), Expect = 2e-05
Identities = 23/39 (58%), Positives = 23/39 (58%)
Frame = +1
Query: 337 GRGGLGAGGRAGGRSGGREGGGAGAMGGRRGRGGRRGRG 375
G GG G GG GGR GG GGG GA GG G GG G G
Sbjct: 25 GGGGGGGGGGGGGRGGGGGGGGGGAGGGGGGGGGGGGGG 141
Score = 46.2 bits (108), Expect = 2e-05
Identities = 23/40 (57%), Positives = 23/40 (57%)
Frame = +2
Query: 336 AGRGGLGAGGRAGGRSGGREGGGAGAMGGRRGRGGRRGRG 375
AG GG G GG GG GG GGG G GGR G GG G G
Sbjct: 11 AGGGGGGGGGGGGGGGGGGGGGGGGGGGGRGGGGGGGGGG 130
Score = 45.1 bits (105), Expect = 5e-05
Identities = 24/48 (50%), Positives = 25/48 (52%)
Frame = +3
Query: 328 GTQGIAYAAGRGGLGAGGRAGGRSGGREGGGAGAMGGRRGRGGRRGRG 375
G +G G GG G GG AGG GG GGG G GG G GG G G
Sbjct: 6 GGRGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGG 149
Score = 45.1 bits (105), Expect = 5e-05
Identities = 24/48 (50%), Positives = 24/48 (50%)
Frame = +2
Query: 328 GTQGIAYAAGRGGLGAGGRAGGRSGGREGGGAGAMGGRRGRGGRRGRG 375
G G G GG G GG GG GGR GGG G GG G GG G G
Sbjct: 20 GGGGGGGGGGGGGGGGGGGGGGGGGGRGGGGGGGGGGGGGGGGGGGGG 163
Score = 43.9 bits (102), Expect = 1e-04
Identities = 24/48 (50%), Positives = 24/48 (50%)
Frame = +3
Query: 328 GTQGIAYAAGRGGLGAGGRAGGRSGGREGGGAGAMGGRRGRGGRRGRG 375
G G G GG GAGG GG GG GGG G GG G GG G G
Sbjct: 18 GGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 161
Score = 42.4 bits (98), Expect = 3e-04
Identities = 21/36 (58%), Positives = 21/36 (58%)
Frame = +2
Query: 340 GLGAGGRAGGRSGGREGGGAGAMGGRRGRGGRRGRG 375
G GAGG GG GG GGG G GG G GG RG G
Sbjct: 2 GGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGRGGG 109
Score = 40.8 bits (94), Expect = 9e-04
Identities = 20/37 (54%), Positives = 20/37 (54%)
Frame = +2
Query: 339 GGLGAGGRAGGRSGGREGGGAGAMGGRRGRGGRRGRG 375
GG GG GG GG GGG G GG G GGR G G
Sbjct: 2 GGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGRGGGG 112
>BQ144482 similar to GP|6523547|emb| hydroxyproline-rich glycoprotein DZ-HRGP
{Volvox carteri f. nagariensis}, partial (16%)
Length = 993
Score = 46.2 bits (108), Expect = 2e-05
Identities = 26/41 (63%), Positives = 28/41 (67%), Gaps = 2/41 (4%)
Frame = -2
Query: 337 GRGGLGAGG-RAGGRSGGREGGGAGAMGGR-RGRGGRRGRG 375
GRGG GAGG +AG + R GGG G GGR RGRGGR G G
Sbjct: 341 GRGGPGAGGAKAGAKERLRGGGGGGGGGGRKRGRGGRGGGG 219
Score = 41.6 bits (96), Expect = 5e-04
Identities = 32/79 (40%), Positives = 33/79 (41%), Gaps = 11/79 (13%)
Frame = -3
Query: 308 PGTQARALTKRALRILQDLA-------GTQGIAYAAGRGGLGAGGRA-GGRSGGRE---G 356
PG AL A+R A G G AG GG GAGGR GGR G G
Sbjct: 463 PGEPGSALRGGAMRASDGAARRGRPTLGRDGAGRGAGAGGGGAGGRGPGGRRPGPRRG*G 284
Query: 357 GGAGAMGGRRGRGGRRGRG 375
GG G G RGG G G
Sbjct: 283 GGGGGEGEGGERGGGEGEG 227
Score = 41.2 bits (95), Expect = 7e-04
Identities = 28/62 (45%), Positives = 31/62 (49%), Gaps = 3/62 (4%)
Frame = -1
Query: 317 KRALRILQDLAGTQGIAYAAGRGG--LGAGGRAGGRSGGR-EGGGAGAMGGRRGRGGRRG 373
K+ R L ++G YAA R G G AG SGG GGG G GG RG GGR G
Sbjct: 492 KKGGRSLPPPRASRGRRYAAARCAPVTGPPGGAGQHSGGTGPGGGPGRGGGARGAGGRGG 313
Query: 374 RG 375
G
Sbjct: 312 EG 307
Score = 37.7 bits (86), Expect = 0.007
Identities = 27/49 (55%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = -1
Query: 331 GIAYAAGRGGLGAG-GRAGGRSGGREGGGAGAMGGR-RGRGG--RRGRG 375
G A GRGG G G G A G GG G GA GR RGRGG RRG G
Sbjct: 342 GARGAGGRGGEGRGQGEAEGGGGGGRGRGAKEGEGRERGRGGGDRRGGG 196
Score = 37.4 bits (85), Expect = 0.010
Identities = 25/43 (58%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Frame = -2
Query: 337 GRGGLGAGGRAGGRSGGREGGGA---GAMGGRR-GRGGRRGRG 375
G GG G GGR GR GGR GGGA G GG+R RG GRG
Sbjct: 281 GGGGGGGGGRKRGR-GGRGGGGAEIEGEGGGKRWARGDFGGRG 156
Score = 35.8 bits (81), Expect = 0.028
Identities = 24/52 (46%), Positives = 25/52 (47%), Gaps = 6/52 (11%)
Frame = -1
Query: 330 QGIAYAAGRGGLGAG-----GRAGGRSGG-REGGGAGAMGGRRGRGGRRGRG 375
QG A G GG G G GR GR GG R GGG +G R G GRG
Sbjct: 300 QGEAEGGGGGGRGRGAKEGEGRERGRGGGDRRGGGGEKVGAGRLWGAGAGRG 145
Score = 31.2 bits (69), Expect = 0.68
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 334 YAAGRGGLGAGGRAGGRSG-GREGGGAGAMGGR 365
+ +G GG GAGGR GGR+G R G G G R
Sbjct: 56 FRSGAGG-GAGGRRGGRAGRARPGAGRGGAAPR 151
Score = 30.4 bits (67), Expect = 1.2
Identities = 18/33 (54%), Positives = 18/33 (54%)
Frame = +2
Query: 342 GAGGRAGGRSGGREGGGAGAMGGRRGRGGRRGR 374
GAGG AGGR GGR AG GRGG R
Sbjct: 65 GAGGGAGGRRGGR----AGRARPGAGRGGAAPR 151
Score = 28.1 bits (61), Expect = 5.8
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = -2
Query: 337 GRGGLGAGGRAGGRSGGREGGGAGAMGGRRGRGGRRGR 374
GRGG G GG GG + G GGR G R R
Sbjct: 245 GRGGRGGGGAEIEGEGGGKRWARGDFGGRGPVAGPRRR 132
Score = 27.7 bits (60), Expect = 7.5
Identities = 20/48 (41%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Frame = -3
Query: 328 GTQGIAYAAGRGGL---GAGGRAGGRS-----GGREGGGAGAMGGRRG 367
G +G G GG G GG GGR GGR G A A G R G
Sbjct: 256 GERGGGEGEGEGGRR*KGRGGGKGGRGATLGGGGRSRGRAAAPGPRPG 113
>TC83089
Length = 887
Score = 45.8 bits (107), Expect = 3e-05
Identities = 32/77 (41%), Positives = 44/77 (56%), Gaps = 4/77 (5%)
Frame = +3
Query: 203 HLPERVMRQFGYIQTIPRHPSEMDRSSAAEVVDA--AFADYVSYLFPKGDPVIE-EGQAV 259
HLPER +R +GY+QT+P P+ ++ AEVV A FA +V +G+ V E EG
Sbjct: 603 HLPERGLR*YGYVQTVPIPPTTIEPLEPAEVVTAFLEFALHVQSQQERGESVPEDEGHKH 782
Query: 260 G-GYMDWYAIVSHCFII 275
GYM + VSH +I
Sbjct: 783 SKGYMK*FYRVSHLLMI 833
Score = 43.9 bits (102), Expect = 1e-04
Identities = 29/88 (32%), Positives = 38/88 (42%), Gaps = 1/88 (1%)
Frame = +3
Query: 42 RMYLMHLVGATLFADKSGGHSFSARWIDMFQNLERVSEFAWGAMALATLYDQLGQ-SLRS 100
+ YL++LVG LF DKS M + +WG M LA LY L + SL
Sbjct: 369 KWYLLYLVGCLLFGDKSNKRIELVYLTTMEDGYAGMRNHSWGGMTLAYLYHCLSEVSLPG 548
Query: 101 GVKQMGGYTSLLLAWVFEHFPDRLVRRY 128
G T + W H P+R +R Y
Sbjct: 549 GGALERSVTLVTAGWFLCHLPERGLR*Y 632
>TC79934 similar to GP|20259633|gb|AAM14173.1 putative GAR1 protein
{Arabidopsis thaliana}, partial (87%)
Length = 814
Score = 45.8 bits (107), Expect = 3e-05
Identities = 24/43 (55%), Positives = 25/43 (57%)
Frame = +1
Query: 333 AYAAGRGGLGAGGRAGGRSGGREGGGAGAMGGRRGRGGRRGRG 375
A GRGG GGR GG GGR+GGG GG R GGR G G
Sbjct: 64 ARGGGRGGGFRGGRDGGFRGGRDGGGFRGRGGGRFGGGRGGGG 192
Score = 41.2 bits (95), Expect = 7e-04
Identities = 21/32 (65%), Positives = 22/32 (68%)
Frame = +1
Query: 344 GGRAGGRSGGREGGGAGAMGGRRGRGGRRGRG 375
G +GGR GGR GGG G GG RG GG RGRG
Sbjct: 496 GQASGGRGGGRGGGGFGR-GGGRGGGGFRGRG 588
Score = 38.9 bits (89), Expect = 0.003
Identities = 26/50 (52%), Positives = 27/50 (54%), Gaps = 9/50 (18%)
Frame = +1
Query: 335 AAGRGGLGAGGRAGGRSGGREGGGAGAMGGRRG-----RGGR----RGRG 375
+ GRGG G GG GR GGR GGG G RG RGGR RGRG
Sbjct: 505 SGGRGG-GRGGGGFGRGGGRGGGGFRGRGPPRGGRGPPRGGRGGGFRGRG 651
Score = 38.1 bits (87), Expect = 0.006
Identities = 22/46 (47%), Positives = 24/46 (51%), Gaps = 4/46 (8%)
Frame = +1
Query: 328 GTQGIAYAAGRGGLGAGGRAGG----RSGGREGGGAGAMGGRRGRG 369
G +G + GR G GGR GG R GGR GGG G GG R G
Sbjct: 73 GGRGGGFRGGRDGGFRGGRDGGGFRGRGGGRFGGGRGGGGGFRDEG 210
>TC78850 homologue to GP|10177413|dbj|BAB10544. fibrillarin-like
{Arabidopsis thaliana}, partial (87%)
Length = 1177
Score = 45.1 bits (105), Expect = 5e-05
Identities = 26/42 (61%), Positives = 26/42 (61%), Gaps = 5/42 (11%)
Frame = +3
Query: 337 GRGGLGAGGRAGG----RSGGRE-GGGAGAMGGRRGRGGRRG 373
G GG G GG GG R GGR GGG GA GG RGRGG RG
Sbjct: 111 GGGGRGFGGGRGGDFKPRGGGRGFGGGRGARGGGRGRGGGRG 236
Score = 44.3 bits (103), Expect = 8e-05
Identities = 24/41 (58%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 337 GRGGLGAGGRAGGRSGGRE--GGGAGAMGGRRGRGGRRGRG 375
GRGG G G GGR G + GGG G GGR RGG RGRG
Sbjct: 102 GRGGGGGRGFGGGRGGDFKPRGGGRGFGGGRGARGGGRGRG 224
Score = 40.0 bits (92), Expect = 0.001
Identities = 27/56 (48%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = +3
Query: 325 DLAGTQGIAYAAGRGGLGAGGRAGGRSGGREGGGAGAMGGRRG-----RGGRRGRG 375
+L +A GRGG G GR G R GGR GGG GG RG RGG RG G
Sbjct: 27 NLCNLLNMAPPRGRGGFG--GRGGDR-GGRGGGGGRGFGGGRGGDFKPRGGGRGFG 185
Score = 28.9 bits (63), Expect = 3.4
Identities = 14/39 (35%), Positives = 17/39 (42%)
Frame = +3
Query: 331 GIAYAAGRGGLGAGGRAGGRSGGREGGGAGAMGGRRGRG 369
G + GRG G G GG GG +GG + R G
Sbjct: 171 GRGFGGGRGARGGGRGRGGGRGGMKGGSKVVVEPHRHEG 287
>BQ141909 weakly similar to GP|14253159|emb VMP3 protein {Volvox carteri f.
nagariensis}, partial (13%)
Length = 1223
Score = 44.7 bits (104), Expect = 6e-05
Identities = 21/39 (53%), Positives = 23/39 (58%)
Frame = +3
Query: 335 AAGRGGLGAGGRAGGRSGGREGGGAGAMGGRRGRGGRRG 373
+ GRGG G G R GGR G GGG G G G GGR+G
Sbjct: 183 SGGRGGRGGGERRGGRRGEEGGGGGGGGEGGGGGGGRKG 299
Score = 42.7 bits (99), Expect = 2e-04
Identities = 24/41 (58%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 337 GRGGLGAGGRAGG--RSGGREGGGAGAMGGRRGRGGRRGRG 375
G GG G GG GG R GR GGG G GGRRGRG + G G
Sbjct: 188 GEGGEGGGGAEGGSERGRGRRGGG-GRGGGRRGRGKKGGGG 307
Score = 41.6 bits (96), Expect = 5e-04
Identities = 24/56 (42%), Positives = 25/56 (43%), Gaps = 19/56 (33%)
Frame = +2
Query: 337 GRGGLGAGGRAGG-------------------RSGGREGGGAGAMGGRRGRGGRRG 373
GRG G GGR GG R GG EGGG G + GR G G RRG
Sbjct: 236 GRGRRGGGGRGGGRRGRGKKGGGGTKGRGKRERGGGTEGGGKGKIEGRNGTGRRRG 403
Score = 37.7 bits (86), Expect = 0.007
Identities = 24/53 (45%), Positives = 25/53 (46%), Gaps = 14/53 (26%)
Frame = +2
Query: 337 GRGGLGAG-----GRAGGRSGGREGGGAGAMGGRRGR---------GGRRGRG 375
GR G G+G G G R G EGGG G RGR GGRRGRG
Sbjct: 131 GRRGRGSGKMRRRGERGKRGEGGEGGGGAEGGSERGRGRRGGGGRGGGRRGRG 289
Score = 37.4 bits (85), Expect = 0.010
Identities = 25/58 (43%), Positives = 28/58 (48%), Gaps = 10/58 (17%)
Frame = +2
Query: 328 GTQGIAYAAGRGGLGAGGRA---------GGRSGGREGGGAGAMGGRRGRGGR-RGRG 375
G +G G GG GA G + GGR GGR G G GG +GRG R RG G
Sbjct: 170 GERGKRGEGGEGGGGAEGGSERGRGRRGGGGRGGGRRGRGKKGGGGTKGRGKRERGGG 343
Score = 28.5 bits (62), Expect = 4.4
Identities = 20/44 (45%), Positives = 21/44 (47%), Gaps = 11/44 (25%)
Frame = +2
Query: 343 AGGRAGGRSGGREGGGAGAMGGRRG-------RGGR----RGRG 375
AG GGR+G R GGG A RR RGGR RG G
Sbjct: 548 AGEVGGGRAGDRGGGGLRAPSKRRNSKTKRRKRGGRECPERGEG 679
>TC76556 similar to PIR|S71779|S71779 glycine-rich RNA-binding protein GRP1
- wheat, partial (95%)
Length = 754
Score = 44.3 bits (103), Expect = 8e-05
Identities = 23/48 (47%), Positives = 23/48 (47%)
Frame = +2
Query: 328 GTQGIAYAAGRGGLGAGGRAGGRSGGREGGGAGAMGGRRGRGGRRGRG 375
G G Y G GG G R G GG GGG G G RRG GG RG
Sbjct: 365 GRGGGGYGGGGGGYGGERRGYGGGGGYGGGGGGGYGERRGGGGGYSRG 508
Score = 42.7 bits (99), Expect = 2e-04
Identities = 28/55 (50%), Positives = 29/55 (51%), Gaps = 3/55 (5%)
Frame = +2
Query: 324 QDLAG---TQGIAYAAGRGGLGAGGRAGGRSGGREGGGAGAMGGRRGRGGRRGRG 375
QDL G T A + G GG G GGR GG GG GG G G RRG GG G G
Sbjct: 293 QDLDGRNITVNQAQSRGSGGGGGGGRGGGGYGG---GGGGYGGERRGYGGGGGYG 448
Score = 38.5 bits (88), Expect = 0.004
Identities = 26/64 (40%), Positives = 29/64 (44%), Gaps = 3/64 (4%)
Frame = +2
Query: 315 LTKRALRILQDLAGTQGIAYAAGRGGLGAGGRAGGRSGGREGGGAGAM---GGRRGRGGR 371
L R + + Q + G GRGG G GG GG G R G G G GG G G R
Sbjct: 299 LDGRNITVNQAQSRGSGGGGGGGRGGGGYGGGGGGYGGERRGYGGGGGYGGGGGGGYGER 478
Query: 372 RGRG 375
RG G
Sbjct: 479 RGGG 490
Score = 35.0 bits (79), Expect = 0.047
Identities = 21/48 (43%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Frame = +2
Query: 330 QGIAYAAGRGGLGAGG----RAGGRSGGREGGGAGAMGGRRGRGGRRG 373
+G G GG G GG R GG R GGG G GG RGG G
Sbjct: 419 RGYGGGGGYGGGGGGGYGERRGGGGGYSRGGGGGGYGGGGYSRGGGDG 562
>TC76561 similar to PIR|S71779|S71779 glycine-rich RNA-binding protein GRP1
- wheat, partial (95%)
Length = 1054
Score = 44.3 bits (103), Expect = 8e-05
Identities = 23/48 (47%), Positives = 23/48 (47%)
Frame = +1
Query: 328 GTQGIAYAAGRGGLGAGGRAGGRSGGREGGGAGAMGGRRGRGGRRGRG 375
G G Y G GG G R G GG GGG G G RRG GG RG
Sbjct: 619 GRGGGGYGGGGGGYGGERRGYGGGGGYGGGGGGGYGERRGGGGGYSRG 762
Score = 42.7 bits (99), Expect = 2e-04
Identities = 28/55 (50%), Positives = 29/55 (51%), Gaps = 3/55 (5%)
Frame = +1
Query: 324 QDLAG---TQGIAYAAGRGGLGAGGRAGGRSGGREGGGAGAMGGRRGRGGRRGRG 375
QDL G T A + G GG G GGR GG GG GG G G RRG GG G G
Sbjct: 547 QDLDGRNITVNQAQSRGSGGGGGGGRGGGGYGG---GGGGYGGERRGYGGGGGYG 702
Score = 38.5 bits (88), Expect = 0.004
Identities = 26/64 (40%), Positives = 29/64 (44%), Gaps = 3/64 (4%)
Frame = +1
Query: 315 LTKRALRILQDLAGTQGIAYAAGRGGLGAGGRAGGRSGGREGGGAGAM---GGRRGRGGR 371
L R + + Q + G GRGG G GG GG G R G G G GG G G R
Sbjct: 553 LDGRNITVNQAQSRGSGGGGGGGRGGGGYGGGGGGYGGERRGYGGGGGYGGGGGGGYGER 732
Query: 372 RGRG 375
RG G
Sbjct: 733 RGGG 744
Score = 35.0 bits (79), Expect = 0.047
Identities = 21/48 (43%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Frame = +1
Query: 330 QGIAYAAGRGGLGAGG----RAGGRSGGREGGGAGAMGGRRGRGGRRG 373
+G G GG G GG R GG R GGG G GG RGG G
Sbjct: 673 RGYGGGGGYGGGGGGGYGERRGGGGGYSRGGGGGGYGGGGYSRGGGDG 816
>TC76557 similar to PIR|S71779|S71779 glycine-rich RNA-binding protein GRP1
- wheat, partial (95%)
Length = 912
Score = 44.3 bits (103), Expect = 8e-05
Identities = 23/48 (47%), Positives = 23/48 (47%)
Frame = +1
Query: 328 GTQGIAYAAGRGGLGAGGRAGGRSGGREGGGAGAMGGRRGRGGRRGRG 375
G G Y G GG G R G GG GGG G G RRG GG RG
Sbjct: 523 GRGGGGYGGGGGGYGGERRGYGGGGGYGGGGGGGYGERRGGGGGYSRG 666
Score = 42.7 bits (99), Expect = 2e-04
Identities = 28/55 (50%), Positives = 29/55 (51%), Gaps = 3/55 (5%)
Frame = +1
Query: 324 QDLAG---TQGIAYAAGRGGLGAGGRAGGRSGGREGGGAGAMGGRRGRGGRRGRG 375
QDL G T A + G GG G GGR GG GG GG G G RRG GG G G
Sbjct: 451 QDLDGRNITVNQAQSRGSGGGGGGGRGGGGYGG---GGGGYGGERRGYGGGGGYG 606
Score = 38.5 bits (88), Expect = 0.004
Identities = 26/64 (40%), Positives = 29/64 (44%), Gaps = 3/64 (4%)
Frame = +1
Query: 315 LTKRALRILQDLAGTQGIAYAAGRGGLGAGGRAGGRSGGREGGGAGAM---GGRRGRGGR 371
L R + + Q + G GRGG G GG GG G R G G G GG G G R
Sbjct: 457 LDGRNITVNQAQSRGSGGGGGGGRGGGGYGGGGGGYGGERRGYGGGGGYGGGGGGGYGER 636
Query: 372 RGRG 375
RG G
Sbjct: 637 RGGG 648
Score = 35.0 bits (79), Expect = 0.047
Identities = 21/48 (43%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Frame = +1
Query: 330 QGIAYAAGRGGLGAGG----RAGGRSGGREGGGAGAMGGRRGRGGRRG 373
+G G GG G GG R GG R GGG G GG RGG G
Sbjct: 577 RGYGGGGGYGGGGGGGYGERRGGGGGYSRGGGGGGYGGGGYSRGGGDG 720
>AL372330 similar to GP|21322752|dbj cold shock protein-1 {Triticum
aestivum}, partial (33%)
Length = 435
Score = 43.1 bits (100), Expect = 2e-04
Identities = 24/50 (48%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 328 GTQGIAYAAGRGGLGAGGRAGGRSGGREGGG-AGAMGGRRGRGGRRGRGH 376
G+ G Y GG G GG GG SGG GGG G GG G GG G G+
Sbjct: 134 GSSG-GYGGSSGGYGGGGYGGGASGGYGGGGYGGGSGGGYGGGGYGGGGY 280
Score = 37.0 bits (84), Expect = 0.012
Identities = 22/48 (45%), Positives = 24/48 (49%)
Frame = +2
Query: 328 GTQGIAYAAGRGGLGAGGRAGGRSGGREGGGAGAMGGRRGRGGRRGRG 375
G+ G G GG +GG GG GG GGG G GG G GG G G
Sbjct: 155 GSSGGYGGGGYGGGASGGYGGGGYGGGSGGGYG--GGGYGGGGYGGGG 292
Score = 36.2 bits (82), Expect = 0.021
Identities = 23/48 (47%), Positives = 23/48 (47%)
Frame = +2
Query: 328 GTQGIAYAAGRGGLGAGGRAGGRSGGREGGGAGAMGGRRGRGGRRGRG 375
G G Y G G GG GG SGG GGG G GG G GG G G
Sbjct: 167 GYGGGGYGGGASGGYGGGGYGGGSGGGYGGG-GYGGGGYGGGGGGGYG 307
Score = 28.9 bits (63), Expect = 3.4
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Frame = +2
Query: 327 AGTQGIAYAAGRGGLGAGGRAGGRSGGREGGGA-----GAMGGRRGRGGRRGRG 375
+G G + + G GG + SGG GGG+ G+ GG G G G G
Sbjct: 20 SGGYGGSSSGGYGGSSSSSYPASSSGGGYGGGSSGGYGGSSGGYGGSSGGYGGG 181
>BQ151059 similar to GP|7291525|gb|A CG9888-PA {Drosophila melanogaster},
partial (26%)
Length = 308
Score = 42.4 bits (98), Expect = 3e-04
Identities = 21/38 (55%), Positives = 21/38 (55%)
Frame = +1
Query: 338 RGGLGAGGRAGGRSGGREGGGAGAMGGRRGRGGRRGRG 375
RGG G GG GG GG GGG G GG G GG G G
Sbjct: 34 RGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 147
>TC78179 weakly similar to GP|7211427|gb|AAF40306.1| RNA helicase {Vigna
radiata}, partial (12%)
Length = 692
Score = 41.6 bits (96), Expect = 5e-04
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +2
Query: 319 ALRILQDLAGTQGIAYAAGRGGLGAGGRAGGRSGG--REGGGAGAMGGRRGRGGRRGRGH 376
+L++ ++L Q ++GR G G +GGR GG R GG G GG +G GG RG G+
Sbjct: 170 SLKVAKELPSLQQREESSGRRFGGGRGFSGGRGGGGYRFGGKGGGGGGGKGYGGGRGGGN 349
Score = 40.8 bits (94), Expect = 9e-04
Identities = 22/53 (41%), Positives = 26/53 (48%)
Frame = +2
Query: 318 RALRILQDLAGTQGIAYAAGRGGLGAGGRAGGRSGGREGGGAGAMGGRRGRGG 370
+ L LQ + G + GRG G G G R GG+ GGG G G GRGG
Sbjct: 185 KELPSLQQREESSGRRFGGGRGFSGGRGGGGYRFGGKGGGGGGGKGYGGGRGG 343
Score = 32.7 bits (73), Expect = 0.23
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +2
Query: 328 GTQGIAYAAGRGGLGAGGRAGGRSGGREGGGAGAMGGRR 366
G +G + G GG GG+ GG GG+ G G G GG R
Sbjct: 239 GGRGFSGGRGGGGYRFGGKGGGGGGGK-GYGGGRGGGNR 352
>BM814145 homologue to GP|21322711|em pherophorin-dz1 protein {Volvox carteri
f. nagariensis}, partial (3%)
Length = 111
Score = 41.6 bits (96), Expect = 5e-04
Identities = 19/34 (55%), Positives = 20/34 (57%)
Frame = +2
Query: 337 GRGGLGAGGRAGGRSGGREGGGAGAMGGRRGRGG 370
G GG+G GG GG GG GGG G GG G GG
Sbjct: 8 GGGGVGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 109
>BQ144502 weakly similar to GP|6523547|emb hydroxyproline-rich glycoprotein
DZ-HRGP {Volvox carteri f. nagariensis}, partial (39%)
Length = 1358
Score = 41.2 bits (95), Expect = 7e-04
Identities = 30/71 (42%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Frame = +1
Query: 317 KRALRILQDLAGTQGIAYAAGRGGLGAGGR------------AGGRSGGREGGGAGAMGG 364
+R L I+ G +G GRG G GGR AGG + G GGGAGA GG
Sbjct: 7 RRELLIIYQKGGGRG-----GRGAGGGGGRWGAQAGACGGVGAGGAAAGGVGGGAGAEGG 171
Query: 365 RRGRGGRRGRG 375
RR RR RG
Sbjct: 172 RR----RRARG 192
Score = 41.2 bits (95), Expect = 7e-04
Identities = 23/50 (46%), Positives = 25/50 (50%), Gaps = 9/50 (18%)
Frame = +2
Query: 335 AAGRGGLGAGGRAGGRSGGREGGGAG---------AMGGRRGRGGRRGRG 375
A GR G G G GGR+GGR GGGAG + G G GG G G
Sbjct: 410 AGGRRGRGRWGAGGGRAGGRRGGGAGGGARPRIVEGLWGGTGAGGLAGGG 559
Score = 39.7 bits (91), Expect = 0.002
Identities = 23/51 (45%), Positives = 25/51 (48%)
Frame = +1
Query: 326 LAGTQGIAYAAGRGGLGAGGRAGGRSGGREGGGAGAMGGRRGRGGRRGRGH 376
L G +G A RGG G GG A G G G G GG GGR GRG+
Sbjct: 436 LGGRRGARGRAPRGGGGGGGAASDCGGALGGDGGGGTGG----GGRGGRGY 576
Score = 38.9 bits (89), Expect = 0.003
Identities = 24/44 (54%), Positives = 26/44 (58%), Gaps = 1/44 (2%)
Frame = +3
Query: 328 GTQGIAYAAGRGGLGAGGR-AGGRSGGREGGGAGAMGGRRGRGG 370
G +G A AAG GG G GG A GR +G GAG GG R RGG
Sbjct: 156 GGRGGAEAAGPGGGGGGGGDALGRRRLAKGSGAGGGGGARSRGG 287
Score = 38.9 bits (89), Expect = 0.003
Identities = 20/31 (64%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 344 GGRAGGRSG-GREGGGAGAMGGRRGRGGRRG 373
GGRAGGR G GR G G G GGRRG G G
Sbjct: 401 GGRAGGRRGRGRWGAGGGRAGGRRGGGAGGG 493
Score = 38.5 bits (88), Expect = 0.004
Identities = 28/66 (42%), Positives = 30/66 (45%)
Frame = +3
Query: 308 PGTQARALTKRALRILQDLAGTQGIAYAAGRGGLGAGGRAGGRSGGREGGGAGAMGGRRG 367
PG ALT A R+ + G G GG AG GGR GGR G GG RG
Sbjct: 375 PGHHGDALTGGA-RVAGGVGGAGG-----PEGGARAGAAGGGRGGGRGLGLWRGSGGGRG 536
Query: 368 RGGRRG 373
RG RG
Sbjct: 537 RGDWRG 554
Score = 37.7 bits (86), Expect = 0.007
Identities = 21/34 (61%), Positives = 21/34 (61%)
Frame = +2
Query: 337 GRGGLGAGGRAGGRSGGREGGGAGAMGGRRGRGG 370
GRGG GG GGR G R GGG G GG R RGG
Sbjct: 116 GRGGPLRGGWGGGR-GPRGGGGGGPGGGGRWRGG 214
Score = 37.7 bits (86), Expect = 0.007
Identities = 23/50 (46%), Positives = 25/50 (50%), Gaps = 11/50 (22%)
Frame = +3
Query: 337 GRGGLGAGGRAGGRSGGREGGGAG---AMGGRR--------GRGGRRGRG 375
G GG G GGR G + G GGG G A+G RR G GG R RG
Sbjct: 135 GGGGGGGGGRGGAEAAGPGGGGGGGGDALGRRRLAKGSGAGGGGGARSRG 284
Score = 35.4 bits (80), Expect = 0.036
Identities = 22/50 (44%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Frame = +2
Query: 336 AGRGGLGAGGRAG----------GRSGGREGGGAGAMGGRRGRGGRRGRG 375
AG GGL AGG G GR G GG G G R G GG G G
Sbjct: 47 AGGGGLAAGGGGGGLRLVRVGGWGRGGPLRGGWGGGRGPRGGGGGGPGGG 196
Score = 35.0 bits (79), Expect = 0.047
Identities = 27/59 (45%), Positives = 28/59 (46%), Gaps = 10/59 (16%)
Frame = +1
Query: 327 AGTQGIAYAAGRGG--------LGAGGRAGGRSGGREGG-GAGAMGGRRGRGGR-RGRG 375
AG +G RGG AGG G G GG G GA GGR G GGR RGRG
Sbjct: 154 AGAEGGRRRRARGGGAVAGGMPSAAGGLLRGVGPGAGGGPGPGAAGGRVGGGGRGRGRG 330
Score = 33.5 bits (75), Expect = 0.14
Identities = 24/68 (35%), Positives = 30/68 (43%), Gaps = 8/68 (11%)
Frame = +3
Query: 316 TKRALRILQDLAGTQGIAYAAGRGGLGAGGRA---GGRSGGREGGGAGAMGGR-----RG 367
T+ A+ + + G +G G +G G GG GGR GGG G GGR G
Sbjct: 6 TEGAINYIPEGGGARGAGGWRRGGEVGGSGWCVWGGGGGGGRCGGGGGGGGGRGGAEAAG 185
Query: 368 RGGRRGRG 375
GG G G
Sbjct: 186 PGGGGGGG 209
Score = 31.2 bits (69), Expect = 0.68
Identities = 27/79 (34%), Positives = 31/79 (39%), Gaps = 33/79 (41%)
Frame = +1
Query: 330 QGIAYAAGRG-GLGA-GGRAGGRSGGREGG------------------------------ 357
+G+ AG G G GA GGR GG GR G
Sbjct: 241 RGVGPGAGGGPGPGAAGGRVGGGGRGRGRGSGPRCAALGEFPDLGPGTTATP*RGARGWP 420
Query: 358 -GAGAMGGRRGRGGRRGRG 375
G+GA+GGRRG GR RG
Sbjct: 421 AGSGALGGRRGARGRAPRG 477
Score = 30.8 bits (68), Expect = 0.89
Identities = 25/50 (50%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +1
Query: 331 GIAYAAG---RG-GLGAGGRAG-GRSGGREGGGAGAMGGRRGRGGRRGRG 375
G+ AAG RG G GAGG G G +GGR GGG GRG RG G
Sbjct: 211 GMPSAAGGLLRGVGPGAGGGPGPGAAGGRVGGG--------GRGRGRGSG 336
Score = 30.4 bits (67), Expect = 1.2
Identities = 23/63 (36%), Positives = 23/63 (36%), Gaps = 24/63 (38%)
Frame = +1
Query: 337 GRGGLGAGGRAG---------GRSGGRE---------------GGGAGAMGGRRGRGGRR 372
G GG G GGR G G S GR GGG G GGRRG
Sbjct: 532 GGGGTGGGGRGGRGYVATRTRGTSAGRGCPPIFLARGTRSHSGGGGGGRGGGRRGVAAGC 711
Query: 373 GRG 375
RG
Sbjct: 712 ARG 720
Score = 30.4 bits (67), Expect = 1.2
Identities = 15/34 (44%), Positives = 17/34 (49%)
Frame = +1
Query: 340 GLGAGGRAGGRSGGREGGGAGAMGGRRGRGGRRG 373
G G GGR GGR G G G + G R +G G
Sbjct: 658 GGGGGGRGGGRRGVAAGCARGMLCGARAQGAPGG 759
Score = 29.3 bits (64), Expect = 2.6
Identities = 23/67 (34%), Positives = 23/67 (34%), Gaps = 32/67 (47%)
Frame = +2
Query: 339 GGLGAGGRAGGRS--------------------------------GGREGGGAGAMGGRR 366
GG GAGG AGG GG EGGG G GG R
Sbjct: 524 GGTGAGGLAGGGEVGGGM*RLGREGRAPGGAAHQFSWQEGRVPIPGGEEGGGGGGGGGWR 703
Query: 367 GRGGRRG 373
RG R G
Sbjct: 704 -RGAREG 721
Score = 28.5 bits (62), Expect = 4.4
Identities = 25/69 (36%), Positives = 29/69 (41%), Gaps = 22/69 (31%)
Frame = +2
Query: 321 RILQDLAGTQGIAYAAGRGGLGAG-------GRAGGRS--------------GGREGGGA 359
RI++ L G G AG G +G G GRA G + GG EGGG
Sbjct: 503 RIVEGLWGGTGAGGLAGGGEVGGGM*RLGREGRAPGGAAHQFSWQEGRVPIPGGEEGGGG 682
Query: 360 GA-MGGRRG 367
G G RRG
Sbjct: 683 GGGGGWRRG 709
Score = 27.3 bits (59), Expect = 9.8
Identities = 15/29 (51%), Positives = 16/29 (54%)
Frame = +2
Query: 340 GLGAGGRAGGRSGGREGGGAGAMGGRRGR 368
GL G AGG +GG E GG GR GR
Sbjct: 515 GLWGGTGAGGLAGGGEVGGGM*RLGREGR 601
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.323 0.140 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,900,028
Number of Sequences: 36976
Number of extensions: 153614
Number of successful extensions: 2716
Number of sequences better than 10.0: 236
Number of HSP's better than 10.0 without gapping: 1563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2263
length of query: 376
length of database: 9,014,727
effective HSP length: 98
effective length of query: 278
effective length of database: 5,391,079
effective search space: 1498719962
effective search space used: 1498719962
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0348.16