TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0348.13
         (381 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC77850 weakly similar to PIR|H96517|H96517 protein T2E6.22 [imp...   311  2e-86
BG646718 weakly similar to PIR|H96517|H96 protein T2E6.22 [impor...   100  1e-21
BF637378 weakly similar to PIR|H96517|H965 protein T2E6.22 [impo...    47  2e-11
BF006197 weakly similar to GP|1310677|emb| protein z-type serpin...    40  1e-06
AW560154                                                               42  3e-04
TC85326 similar to GP|5738542|emb|CAB53034.1 photosystem I subun...    31  0.69
BQ138437 weakly similar to PIR|T51919|T519 related to aldehyde d...    30  1.2
TC91783 similar to GP|16226796|gb|AAL16264.1 At2g47960/T9J23.10 ...    30  1.5
TC77282 homologue to GP|17065300|gb|AAL32804.1 Unknown protein {...    29  2.6
TC91284 similar to GP|21554350|gb|AAM63457.1 unknown {Arabidopsi...    29  2.6
TC85329 homologue to GP|5738542|emb|CAB53034.1 photosystem I sub...    29  2.6
TC79256 similar to GP|21554235|gb|AAM63310.1 CPRD49 {Arabidopsis...    29  3.4
TC90906 similar to GP|16604607|gb|AAL24096.1 putative AtBgamma p...    28  4.5
TC83828 weakly similar to GP|22530894|gb|AAM96888.1 hypothetical...    28  4.5
TC79874 similar to GP|17065608|gb|AAL33784.1 unknown protein {Ar...    28  4.5
TC85010 weakly similar to PIR|T40514|T40514 Chaperonin hsp78p - ...    28  4.5
BG649019 similar to PIR|T52612|T52 SRP receptor homolog FtsY pre...    28  5.9
TC76719 similar to GP|21595178|gb|AAM66078.1 endo-xyloglucan tra...    28  5.9
TC90018 weakly similar to PIR|B84607|B84607 hypothetical protein...    28  7.7
AJ501833 PIR|A87356|A87 sugar ABC transporter  ATP-binding prote...    28  7.7

>TC77850 weakly similar to PIR|H96517|H96517 protein T2E6.22 [imported] -
           Arabidopsis thaliana, partial (65%)
          Length = 1485

 Score =  311 bits (798), Expect(2) = 2e-86
 Identities = 172/314 (54%), Positives = 228/314 (71%), Gaps = 1/314 (0%)
 Frame = +2

Query: 69  DAADADAHHLSFTNGMFVDKSVSLSYPFRLLLAYQYNASLASLDFKNRGDRVLHDVNSLI 128
           DA+ A    LSF +G++VD+++SL   F+ +++  + A+L+S+DF+N+   V ++VNS  
Sbjct: 284 DASPAGGPLLSFVDGVWVDQTLSLQPSFQQIVSTHFKAALSSVDFQNKAVEVTNEVNSWA 463

Query: 129 ELQSNGHITQLLPPGTITNLTRLIFANALRFQGLWKHKFDGPRYE-FPFDLLNGTSVKVP 187
           E ++NG I +LLP G++ N TRLIFANAL F+G W  KFD  + E + F LLNG+ VKVP
Sbjct: 464 EKETNGLIKELLPLGSVNNATRLIFANALYFKGAWNDKFDASKTEDYEFHLLNGSPVKVP 643

Query: 188 FMTIKKKTHYIRAFDAFKILRLPYKQGRDRKRRFSMCIFLPDASDGLSALVHKLSSEPGF 247
           FMT KKK  +IRAFD FK+L LPYKQG D KR+F+M  FLP+A DGL+ALV K++SE   
Sbjct: 644 FMTSKKK-QFIRAFDGFKVLGLPYKQGED-KRQFTMYFFLPNAKDGLAALVEKVASESEL 817

Query: 248 LKGKLPRRKVRVDALQIPKFNISFTFEASNVLKEVGVVSPFSPMDACFTKMLEINSPSNN 307
           L+ KLP  KV V   +IPKFNISF  E S++LKE+GVV PFS      TKM+  +S S N
Sbjct: 818 LQHKLPFGKVEVGDFRIPKFNISFGLETSDMLKELGVVLPFS--GGGLTKMVN-SSVSQN 988

Query: 308 LCVESIFHKAFIEVNEKGTKATAASVGFAPVTQSARRPGPVINFIANHPFLFLIREDFTG 367
           LCV +IFHK+FIEVNE+GT+A AA+     + +SA    P ++F+A+HPFLF+IRED TG
Sbjct: 989 LCVSNIFHKSFIEVNEEGTEAAAATAA-TILLRSAMSIPPRLDFVADHPFLFMIREDLTG 1165

Query: 368 TILFVGQVLNPLDG 381
           TI+FVGQVLNPL G
Sbjct: 1166TIIFVGQVLNPLAG 1207



 Score = 25.4 bits (54), Expect(2) = 2e-86
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +3

Query: 38  STSFSPSSDLTPSTISTPSSLRGFPLCSPT 67
           STSF+P+    P  IST S    FP  SPT
Sbjct: 210 STSFNPN----PPIISTTSLHSSFPSSSPT 287


>BG646718 weakly similar to PIR|H96517|H96 protein T2E6.22 [imported] -
           Arabidopsis thaliana, partial (30%)
          Length = 702

 Score =  100 bits (248), Expect = 1e-21
 Identities = 64/169 (37%), Positives = 95/169 (55%), Gaps = 2/169 (1%)
 Frame = +2

Query: 2   NIYSQKKIIKRRTSSIHPCLSTLLLASWPPVQKAAHSTSFSPSSDLTPSTISTPSSLRGF 61
           NI SQ    ++ TSS   CL  L  A        +H+ +   +S L    I+  S L   
Sbjct: 62  NICSQNN--QKTTSSFRHCLCKLCSAF*-----LSHTAA---TSRLPTIQIN*SSQLPRL 211

Query: 62  PLCSPT--KDAADADAHHLSFTNGMFVDKSVSLSYPFRLLLAYQYNASLASLDFKNRGDR 119
             C      DAA A   HLSF +G++++K++SL   F+ +++  Y A+LAS+DF  +   
Sbjct: 212 TACFSIVLSDAASAGGPHLSFVDGVWIEKTLSLQPSFKQIMSSDYKATLASVDFMFKAPE 391

Query: 120 VLHDVNSLIELQSNGHITQLLPPGTITNLTRLIFANALRFQGLWKHKFD 168
           V  +VN  +E ++NG I +L+PPG++ +LT LIFANAL F+G W  KFD
Sbjct: 392 VRKEVNIWVEKETNGLIKELIPPGSVDSLTSLIFANALYFRGAWNEKFD 538


>BF637378 weakly similar to PIR|H96517|H965 protein T2E6.22 [imported] -
           Arabidopsis thaliana, partial (9%)
          Length = 627

 Score = 47.0 bits (110), Expect(2) = 2e-11
 Identities = 19/49 (38%), Positives = 35/49 (70%)
 Frame = +1

Query: 68  KDAADADAHHLSFTNGMFVDKSVSLSYPFRLLLAYQYNASLASLDFKNR 116
           KDA  +   HLSF +G++++K++SL   F+ +++  Y A+L+ +DFKN+
Sbjct: 247 KDATSSGGPHLSFVDGVWLEKTLSLQSSFKQIVSEDYKATLSEVDFKNK 393



 Score = 39.3 bits (90), Expect(2) = 2e-11
 Identities = 28/66 (42%), Positives = 32/66 (48%)
 Frame = +2

Query: 2   NIYSQKKIIKRRTSSIHPCLSTLLLASWPPVQKAAHSTSFSPSSDLTPSTISTPSSLRGF 61
           NI S K   ++RTS    CLS L  A      +  H+ SF  SS   P  ISTP SL  F
Sbjct: 62  NISSPKN--QKRTSCFRHCLSKLCSA*SLLALRVQHNNSFLTSSVSNPLIISTPQSLINF 235

Query: 62  PLCSPT 67
           P  S T
Sbjct: 236 PSSSKT 253


>BF006197 weakly similar to GP|1310677|emb| protein z-type serpin {Hordeum
           vulgare subsp. vulgare}, partial (7%)
          Length = 468

 Score = 40.0 bits (92), Expect(2) = 1e-06
 Identities = 19/48 (39%), Positives = 31/48 (64%)
 Frame = +3

Query: 69  DAADADAHHLSFTNGMFVDKSVSLSYPFRLLLAYQYNASLASLDFKNR 116
           DAA +    LS T  ++VD+++SL   F+  +   Y A+LAS+DF+N+
Sbjct: 120 DAAPSGGSRLSLTQRVWVDQTLSLQPSFKETMVTDYKATLASVDFQNK 263



 Score = 30.0 bits (66), Expect(2) = 1e-06
 Identities = 15/29 (51%), Positives = 18/29 (61%)
 Frame = +1

Query: 34 KAAHSTSFSPSSDLTPSTISTPSSLRGFP 62
          +  H+ +FS SS    STISTPS L  FP
Sbjct: 22 RVVHNNNFSNSSVPNSSTISTPSLLISFP 108


>AW560154 
          Length = 470

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 20/48 (41%), Positives = 32/48 (66%)
 Frame = +1

Query: 69  DAADADAHHLSFTNGMFVDKSVSLSYPFRLLLAYQYNASLASLDFKNR 116
           DAA +    LSFT  ++VD+++SL   F+  +   Y A+LAS+DF+N+
Sbjct: 49  DAAPSGGSRLSFTQRVWVDQTLSLQPSFKETMVTDYKATLASVDFQNK 192


>TC85326 similar to GP|5738542|emb|CAB53034.1 photosystem I subunit XI
           precursor {Arabidopsis thaliana}, partial (85%)
          Length = 826

 Score = 31.2 bits (69), Expect = 0.69
 Identities = 32/106 (30%), Positives = 51/106 (47%), Gaps = 3/106 (2%)
 Frame = +2

Query: 96  FRLLLAYQYNASLASLDFKNRGDRVL---HDVNSLIELQSNGHITQLLPPGTITNLTRLI 152
           ++LLL +Q N+S ASLD  +  +  +   H +N L+E    G++T LL P  + + T   
Sbjct: 47  WQLLLLWQANSSPASLDLWSHLEDFVALPHSINYLLE----GNLTSLLRPSNLKSQTTK* 214

Query: 153 FANALRFQGLWKHKFDGPRYEFPFDLLNGTSVKVPFMTIKKKTHYI 198
           F  ++    L   K    +      LL+GTS      T  + THY+
Sbjct: 215 FNQSMVIHSLEALKLQLHQAH----LLHGTSPTYQ-ATELQ*THYL 337


>BQ138437 weakly similar to PIR|T51919|T519 related to aldehyde dehydrogenase
           (NAD+) [imported] - Neurospora crassa, partial (14%)
          Length = 668

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -1

Query: 116 RGDRVLHDVNSLIEL--QSNGHITQLLPPGTITNLTRLIFANALR 158
           RG+ +L   NS++++    NGH+ QLL  G +  +  L+ A A R
Sbjct: 206 RGEGLLCSCNSIVQVLVARNGHVPQLLAGGRVDAMVDLVRATASR 72


>TC91783 similar to GP|16226796|gb|AAL16264.1 At2g47960/T9J23.10
           {Arabidopsis thaliana}, partial (27%)
          Length = 597

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 18/61 (29%), Positives = 27/61 (43%)
 Frame = +1

Query: 3   IYSQKKIIKRRTSSIHPCLSTLLLASWPPVQKAAHSTSFSPSSDLTPSTISTPSSLRGFP 62
           I+S   +     S +HP  STLL  S P    +  +TS      + P  +  P+SL   P
Sbjct: 142 IFSLSSLSCHADSVVHPSTSTLLFVSIPTTSSSVKTTS------MIPPPLPPPTSLLPIP 303

Query: 63  L 63
           +
Sbjct: 304 I 306


>TC77282 homologue to GP|17065300|gb|AAL32804.1 Unknown protein {Arabidopsis
           thaliana}, partial (19%)
          Length = 787

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
 Frame = +2

Query: 31  PVQKAAHSTSFSPSSDLTPSTISTPSSLRGFPL-----CSPTKDAADADAHHLSFTN 82
           P    + STS SP S  +P+T S P+     P       +P +  ADA +   S TN
Sbjct: 269 PSPAVSPSTSSSPGSSPSPNTFSPPAPGSNVPASGPGGATPGQPGADAPSAAFSITN 439


>TC91284 similar to GP|21554350|gb|AAM63457.1 unknown {Arabidopsis
           thaliana}, partial (77%)
          Length = 742

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = +1

Query: 31  PVQKAAHSTSFSPSSDLTPSTISTPSSLRGFPLCSPTKDAADADAHHLSFTNGMF 85
           P   +A+S++ SPS+  TP T+STP+     P  SP   +    +H +S  +  F
Sbjct: 67  PSSPSAYSSA-SPSTQTTPPTLSTPT-----PPASPPPPSPKISSHFMSTHSAHF 213


>TC85329 homologue to GP|5738542|emb|CAB53034.1 photosystem I subunit XI
           precursor {Arabidopsis thaliana}, partial (79%)
          Length = 1068

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 19/53 (35%), Positives = 31/53 (57%), Gaps = 3/53 (5%)
 Frame = +1

Query: 96  FRLLLAYQYNASLASLDFKNRGDRVL---HDVNSLIELQSNGHITQLLPPGTI 145
           ++LLL +Q N+S ASLD  +  +  +   H +N L+E    G++T LL P  +
Sbjct: 16  WQLLLLWQANSSPASLDLWSHLEDFVALPHSINYLLE----GNLTSLLRPSNL 162


>TC79256 similar to GP|21554235|gb|AAM63310.1 CPRD49 {Arabidopsis thaliana},
           complete
          Length = 1261

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -3

Query: 15  SSIHPCLSTLLL---ASWPPVQKAAHSTSFSPSSDLTPSTISTPSSLRGF 61
           S+ +   +T+LL   A W P  K A S S    S L  ST  TPSSL  F
Sbjct: 815 STFNISFTTILLPSAAKWIPSVKHAFSQSSILCSALKRSTTFTPSSLHSF 666


>TC90906 similar to GP|16604607|gb|AAL24096.1 putative AtBgamma protein
           {Arabidopsis thaliana}, partial (12%)
          Length = 863

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +2

Query: 135 HITQLLPPGTITNLTRLIFANALRFQGLWKHKFDGPRYEFPFDLLNGTSVKVPFMTIKKK 194
           H  +L P    + +  + F  +L F  L+ H  +     F F +L  + + +PF+ I   
Sbjct: 101 HFPKLYPNHKTSLICIITFLFSL*FSFLFSHSREKKSENFDFHMLI*SIIILPFLPITHN 280

Query: 195 THYI 198
            HY+
Sbjct: 281 LHYL 292


>TC83828 weakly similar to GP|22530894|gb|AAM96888.1 hypothetical protein
           {Arabidopsis thaliana}, partial (20%)
          Length = 700

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
 Frame = -2

Query: 238 VHKLSSEPGFLKGKLPRRKVRVDALQIPKFNISFTFEASNVLKEVG-----VVSPFSPMD 292
           VH++S E  F   K P+RK +  +      + +    +S+ LK+ G       +  SP++
Sbjct: 597 VHRMSKENRFKIYKQPKRKEQYTSKLQCVSSFAHFASSSDALKDSGFNILFTETSISPLE 418

Query: 293 ACFTKMLEINSPSNNLC 309
           A F++ +   + SNN C
Sbjct: 417 AAFSE-IHSGTNSNNKC 370


>TC79874 similar to GP|17065608|gb|AAL33784.1 unknown protein {Arabidopsis
           thaliana}, partial (88%)
          Length = 1154

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = +1

Query: 30  PPVQKAAHSTSFSPSSDLTPSTISTPSSLRGFPLCSPTKD 69
           PP     + TSFSPSS +TP T + PSS    P  SP  +
Sbjct: 298 PPTPSHLNLTSFSPSS-VTPPTFA-PSSSTQTPALSPVSN 411


>TC85010 weakly similar to PIR|T40514|T40514 Chaperonin hsp78p - fission
           yeast (Schizosaccharomyces pombe), partial (23%)
          Length = 904

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +1

Query: 1   HNIYSQKKIIKRRT--SSIHPCLSTLLLASWPPVQKAAHSTSFSPSSDLTPSTISTPSSL 58
           H  YS     +RRT  S +  C S + + S    ++A  STS  PSS   P++  T SS 
Sbjct: 97  HTRYSSSTSSRRRTATSRLSSCRSLMRVTS--RTRRATRSTSAIPSSYSHPTSAPTFSSA 270

Query: 59  R 59
           R
Sbjct: 271 R 273


>BG649019 similar to PIR|T52612|T52 SRP receptor homolog FtsY precursor
           chloroplast [validated] - Arabidopsis thaliana, partial
           (39%)
          Length = 788

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 22/65 (33%), Positives = 33/65 (49%)
 Frame = -1

Query: 46  DLTPSTISTPSSLRGFPLCSPTKDAADADAHHLSFTNGMFVDKSVSLSYPFRLLLAYQYN 105
           D++ +TIS PSS   F  C  T DA D            F D + ++S+P  +L A+  +
Sbjct: 383 DVSHNTIS*PSSFPLFTACESTADALD------------FSDSATTISHP--VLSAHISS 246

Query: 106 ASLAS 110
            SLA+
Sbjct: 245 *SLAA 231


>TC76719 similar to GP|21595178|gb|AAM66078.1 endo-xyloglucan transferase
           putative {Arabidopsis thaliana}, partial (90%)
          Length = 1348

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 17/45 (37%), Positives = 23/45 (50%), Gaps = 8/45 (17%)
 Frame = -2

Query: 324 KGTKATAASVGFAP--------VTQSARRPGPVINFIANHPFLFL 360
           K +K++++  G AP        VT  A  P    NFI NHP L+L
Sbjct: 759 KNSKSSSSLSGPAPFSVHI**AVTTPAESPPTSFNFILNHPNLYL 625


>TC90018 weakly similar to PIR|B84607|B84607 hypothetical protein At2g21950
           [imported] - Arabidopsis thaliana, partial (55%)
          Length = 965

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 15  SSIHPCLSTLLLASWPP-VQKAAHSTSFSPSSDLTPSTISTPSSL 58
           SS+    S L L+S PP     + S    P S+ +PSTI+T SSL
Sbjct: 145 SSLLRSSSPLALSSLPPNTSSTSLSAHAPPLSNSSPSTITTVSSL 279


>AJ501833 PIR|A87356|A87 sugar ABC transporter  ATP-binding protein CC0860
           [imported] - Caulobacter crescentus, partial (2%)
          Length = 186

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 30  PPVQKAAHSTSFSPSSDLTPSTISTPSSLRGFPLCSPTKDAA 71
           P +Q+    ++F P+S  + STI T      FP  SP+ D+A
Sbjct: 164 PVLQELTLQSAFFPNSRRSSSTIKTWLPPLSFPSSSPSDDSA 39


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.322    0.138    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,908,336
Number of Sequences: 36976
Number of extensions: 169395
Number of successful extensions: 995
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of query: 381
length of database: 9,014,727
effective HSP length: 98
effective length of query: 283
effective length of database: 5,391,079
effective search space: 1525675357
effective search space used: 1525675357
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)