TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0344.6
         (242 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC92942 similar to GP|15451042|gb|AAK96792.1 putative protein {A...    28  3.2
TC76789 similar to GP|15294254|gb|AAK95304.1 AT4g24770/F22K18_30...    27  7.1
TC88474 similar to GP|19698365|gb|AAL93108.1 holocarboxylase syn...    27  7.1
TC77653 similar to GP|20334820|gb|AAM16166.1 At1g12050/F12F1_8 {...    27  9.3

>TC92942 similar to GP|15451042|gb|AAK96792.1 putative protein {Arabidopsis
           thaliana}, partial (38%)
          Length = 650

 Score = 28.1 bits (61), Expect = 3.2
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -1

Query: 131 IQNGPAYFNCF--SSYPVCLRDPHVTTCVDLDIKIPNEMF 168
           + N P  FNCF  S++P C   P + TC ++    P   F
Sbjct: 347 LANSPDSFNCFKSSAFPTCF--PLIKTCGNVTTDFPPSAF 234


>TC76789 similar to GP|15294254|gb|AAK95304.1 AT4g24770/F22K18_30
           {Arabidopsis thaliana}, partial (62%)
          Length = 1294

 Score = 26.9 bits (58), Expect = 7.1
 Identities = 12/35 (34%), Positives = 21/35 (59%)
 Frame = -2

Query: 12  NSEENDSNLEQKLQNWSIPKIRTNQVYKTSIFEFN 46
           NS++  SNL++ LQNW +      Q+  +  F+F+
Sbjct: 474 NSQQKSSNLQKVLQNWQL------QLLHSRYFQFH 388


>TC88474 similar to GP|19698365|gb|AAL93108.1 holocarboxylase synthetase 1
           {Arabidopsis thaliana}, partial (44%)
          Length = 818

 Score = 26.9 bits (58), Expect = 7.1
 Identities = 11/35 (31%), Positives = 20/35 (56%)
 Frame = +3

Query: 150 DPHVTTCVDLDIKIPNEMFIDGIPPVSIMYRFCYK 184
           D +   CVD+ IK PN+++++G     I+    Y+
Sbjct: 636 DKNGLPCVDVKIKWPNDLYLNGFKVGGILCTSTYR 740


>TC77653 similar to GP|20334820|gb|AAM16166.1 At1g12050/F12F1_8 {Arabidopsis
           thaliana}, partial (36%)
          Length = 778

 Score = 26.6 bits (57), Expect = 9.3
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = +3

Query: 193 KAVRDYTVN-ETEVTEINAENSSRITRKILKHDEITYPQE----WLQGCSSQP 240
           K  ++Y ++ E  +  +N ++SS +TR  LKH   T  Q+     + GC+ +P
Sbjct: 87  KVSKNYDLSLEVHIKPVNHKDSSIVTRSNLKHLYWTLTQQLAHHTINGCNLRP 245


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.320    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,270,116
Number of Sequences: 36976
Number of extensions: 117598
Number of successful extensions: 533
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of query: 242
length of database: 9,014,727
effective HSP length: 93
effective length of query: 149
effective length of database: 5,575,959
effective search space: 830817891
effective search space used: 830817891
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)