TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0343.7
         (342 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG584025 homologue to PIR|A46259|A46 recombination protein recA ...    42  4e-04
TC85128 similar to PIR|D84577|D84577 probable recA protein [impo...    34  0.071
BG448092 weakly similar to GP|18996122|gb RecA protein {Arabidop...    32  0.27
TC87799 weakly similar to PIR|C84713|C84713 probable dioxygenase...    29  3.0
BQ151242 similar to PIR|G86292|G86 hypothetical protein AAF82153...    28  6.7

>BG584025 homologue to PIR|A46259|A46 recombination protein recA homolog -
           Arabidopsis thaliana (fragment), partial (43%)
          Length = 828

 Score = 41.6 bits (96), Expect = 4e-04
 Identities = 45/143 (31%), Positives = 60/143 (41%), Gaps = 1/143 (0%)
 Frame = +3

Query: 107 TGSRELDKILDGGIETGSITELYGEFRSGKTQLC-HTLCVTCQLPLDQGGGEGKAMYIDA 165
           +G   LD  L GG+  G I E++G   SGKT L  H +    +L        G AM +DA
Sbjct: 408 SGCLALDFALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKL-------GGNAMLVDA 566

Query: 166 EGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFAVMIVD 225
           E  F P     +       G DV EN+   +    DH    L  A  M       ++ VD
Sbjct: 567 EHAFDPAYSKAV-------GVDV-ENLIVCQ---PDHGEMALEIADRMCRSGAIDLICVD 713

Query: 226 SATALYRTDFSGRGELSARQMHL 248
           S +AL        GE+  +QM L
Sbjct: 714 SVSAL-TPRAEVEGEIGMQQMGL 779


>TC85128 similar to PIR|D84577|D84577 probable recA protein [imported] -
           Arabidopsis thaliana, partial (71%)
          Length = 821

 Score = 34.3 bits (77), Expect = 0.071
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
 Frame = +3

Query: 221 VMIVDSATALYRTDFSGRGELSARQ--MHLAKFLR----SLQKLADEFGVA---IVITNQ 271
           V++VDS  AL       +GEL       H+A   R    +L+KL     ++   ++  NQ
Sbjct: 327 VIVVDSVAALVP-----KGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQCILIFINQ 491

Query: 272 VVSQVDGSAVFAGPQVKPIGGNIMAHATTTRLALRK----GRGEERI 314
           V S++     F GP     GGN +   ++ RL +++     +GEE +
Sbjct: 492 VRSKISTFGGFGGPTEVTCGGNALKFYSSVRLNIKRVGFVKKGEETV 632


>BG448092 weakly similar to GP|18996122|gb RecA protein {Arabidopsis
           thaliana}, partial (29%)
          Length = 631

 Score = 32.3 bits (72), Expect = 0.27
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 105 ITTGSRELDKILD-GGIETGSITELYGEFRSGKTQL 139
           ++TGS +LD  L  GG+  G I E+YG   +GKT L
Sbjct: 447 VSTGSLKLDIALGIGGLPKGRIVEIYGREAAGKTTL 554


>TC87799 weakly similar to PIR|C84713|C84713 probable dioxygenase [imported]
           - Arabidopsis thaliana, partial (65%)
          Length = 1398

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 13/55 (23%), Positives = 27/55 (48%)
 Frame = +1

Query: 28  IEQLQASGIASIDVKKLKDAGICTVESVAYTPRKDLLQIKGISEAKVDKIVEAAS 82
           +++L+A     + VK L DAGI  +  + Y PR    +   +    +  +++ A+
Sbjct: 91  VKELKAFDETKLGVKGLVDAGITKIPRIFYQPRDSTKKASELGHTTIVPVIDLAN 255


>BQ151242 similar to PIR|G86292|G86 hypothetical protein AAF82153.1
           [imported] - Arabidopsis thaliana, partial (5%)
          Length = 1371

 Score = 27.7 bits (60), Expect = 6.7
 Identities = 16/59 (27%), Positives = 26/59 (43%), Gaps = 3/59 (5%)
 Frame = +3

Query: 5   RHQKTAQQQPQEEGEEIQHGPLPIEQLQASGIASIDVKKLKDAGICTVE---SVAYTPR 60
           RH        Q +   I+H  LPI +  +  +   D    +D+  CT +   +VA+ PR
Sbjct: 453 RHNNPPPNGAQADPPPIRH--LPIAEFHSQTLGQSDAPNAEDSAACTAQVAPAVAHVPR 623


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.317    0.133    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,462,870
Number of Sequences: 36976
Number of extensions: 78144
Number of successful extensions: 395
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of query: 342
length of database: 9,014,727
effective HSP length: 97
effective length of query: 245
effective length of database: 5,428,055
effective search space: 1329873475
effective search space used: 1329873475
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)