BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0342b.10
(1246 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG586266 similar to GP|7267666|em RNA-directed DNA polymerase-li... 187 3e-47
BG447966 weakly similar to PIR|G96509|G96 protein F27F5.21 [impo... 154 2e-37
BF650289 weakly similar to GP|9049283|dbj| orf129a {Beta vulgari... 141 1e-33
BG586267 weakly similar to PIR|A84888|A8 hypothetical protein At... 102 2e-33
BG587108 similar to PIR|G96509|G9 protein F27F5.21 [imported] - ... 88 5e-33
TC83226 weakly similar to PIR|G86419|G86419 probable reverse tra... 114 2e-25
TC83437 weakly similar to PIR|D86384|D86384 unknown protein [imp... 108 1e-23
TC81386 similar to GP|10140689|gb|AAG13524.1 putative non-LTR re... 107 2e-23
BG647708 weakly similar to GP|13786450|gb| putative reverse tran... 102 1e-21
BG586862 91 4e-18
BG587113 weakly similar to PIR|A84888|A8 hypothetical protein At... 89 1e-17
TC77455 similar to GP|22335695|dbj|BAC10549. nine-cis-epoxycarot... 57 8e-17
TC80819 weakly similar to GP|10140689|gb|AAG13524.1 putative non... 53 2e-15
BG585866 72 1e-12
TC93101 70 7e-12
BE248682 similar to GP|18568269|gb putative gag-pol polyprotein ... 64 3e-10
BQ148771 64 5e-10
BG584442 62 1e-09
AJ497561 weakly similar to GP|10140689|gb putative non-LTR retro... 60 7e-09
BG646730 58 2e-08
>BG586266 similar to GP|7267666|em RNA-directed DNA polymerase-like protein
{Arabidopsis thaliana}, partial (18%)
Length = 789
Score = 187 bits (474), Expect = 3e-47
Identities = 90/223 (40%), Positives = 136/223 (60%)
Frame = -3
Query: 382 VVQFRPISCCNYILKVISRIMVTRLKEDLDSLISPNQSAFVGGRLIQDNIVVAQEAFHLL 441
V ++R I+ CN K+I++I+ R++ L S+ISP+QSAFV GR I DN+++ + H L
Sbjct: 778 VSEYRTIAPCNTQYKIIAKILSKRMQPLLRSIISPSQSAFVPGRAISDNVLITHKILHYL 599
Query: 442 LKGGQSSKNYMALKVDMSKAYDRLEWTFIERTLLAYGFHPTWIDRVLTLVRGATYRLKVN 501
+ G MA+K DM+KAYDR+ W F+ L GFH WI ++ V +Y +N
Sbjct: 598 RQSGAKKHVSMAVKTDMTKAYDRIAWNFLREVLTRLGFHGIWISWIMECVSTVSYSFLIN 419
Query: 502 GFLSPSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQEGKFFGLRFTAESPALTHLF 561
G ++P RGLRQGDPLSPYLF+L T+VLS + QA ++G G++ P + HL
Sbjct: 418 GGPQGRVLPSRGLRQGDPLSPYLFILCTEVLSGLCQQALRKGTLPGVKVARNCPPINHLL 239
Query: 562 FADDSLLFAEASVREATSIIQVLNLYNRASGQKINVAKSGLIF 604
FADD++ F +++ ++ +++ Y ASG+ IN KS + F
Sbjct: 238 FADDTMFFGKSNASSCAILLSIMDKYRAASGRCIN*TKSAITF 110
>BG447966 weakly similar to PIR|G96509|G96 protein F27F5.21 [imported] -
Arabidopsis thaliana, partial (7%)
Length = 687
Score = 154 bits (389), Expect = 2e-37
Identities = 75/210 (35%), Positives = 125/210 (58%)
Frame = +2
Query: 225 WAKYGDKNSKFFHASTIQRRNRNRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHTEGVS 284
W K GDKN+KFFH+ QRR N I +++D G W +G+ +V I+++ ++F + +
Sbjct: 5 WLKDGDKNTKFFHSKASQRRKVNEIKKLKDETGNWCKGEENVERLLITYFNNLFTSSNPT 184
Query: 285 QIEECLHNFPKKVTQQLNNKLILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAI 344
IEE K++ + ++ E+ EA+N++ +KAPGPDGL LFF+ +W +
Sbjct: 185 AIEETCEVVKGKLSHEHIVWCEKEFTEEEVLEAINQMHPVKAPGPDGLPALFFQKYWHIV 364
Query: 345 KDTVCPAIKEFFLSENLSSEINETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVT 404
V + + + + E+N+T + LIPK +P + +RPIS CN ++K+I++++
Sbjct: 365 GKEVQQMVLQVLNNSMETEELNKTFIVLIPKGKNPNTPKDYRPISLCNVVMKIITKVIAN 544
Query: 405 RLKEDLDSLISPNQSAFVGGRLIQDNIVVA 434
R+K+ L +I QSAFV GRLI DN ++A
Sbjct: 545 RVKQTLPDVIDVEQSAFVQGRLITDNALIA 634
>BF650289 weakly similar to GP|9049283|dbj| orf129a {Beta vulgaris}, partial
(69%)
Length = 616
Score = 141 bits (356), Expect = 1e-33
Identities = 78/194 (40%), Positives = 117/194 (60%)
Frame = +3
Query: 312 LEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIKEFFLSENLSSEINETIVA 371
+E+ A+ + KAPG DG N FFK W I D+V AI +FF + + IN T V
Sbjct: 33 VEVKNALFSMDSSKAPGIDGYNVHFFKCSWNIIGDSVIDAILDFFKTGFMPKIINCTYVT 212
Query: 372 LIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDSLISPNQSAFVGGRLIQDNI 431
L+PK + SV FRPI+CC+ I K+IS+I+ +R++ L+S++S NQSAFV GR+I DNI
Sbjct: 213 LLPKEVNVTSVKNFRPIACCSVIYKIISKILTSRMQGVLNSVVSENQSAFVKGRVIFDNI 392
Query: 432 VVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIERTLLAYGFHPTWIDRVLTLV 491
+++ E + G S + +K+D+ KAYD EW FI+ +L GF +++ V+ +
Sbjct: 393 ILSHELVKSYSRKGISPR--CMVKIDLXKAYDSXEWPFIKHLMLELGFPYKFVNWVMAXL 566
Query: 492 RGATYRLKVNGFLS 505
A+Y NG L+
Sbjct: 567 TTASYTFNXNGDLT 608
>BG586267 weakly similar to PIR|A84888|A8 hypothetical protein At2g45230
[imported] - Arabidopsis thaliana, partial (16%)
Length = 794
Score = 102 bits (255), Expect(2) = 2e-33
Identities = 55/168 (32%), Positives = 94/168 (55%)
Frame = +3
Query: 201 VIKLKIDTLWRQEELYWGQRSRVKWAKYGDKNSKFFHASTIQRRNRNRIDRVRDSLGIWK 260
+++ +++ + EE++W Q+SR+ W + GD+N+KFFHA T RR +NRI + D
Sbjct: 87 LLRSELNEEYHNEEIFWMQKSRLNWLRSGDRNTKFFHAVTKNRRAQNRILSLIDDDDKEW 266
Query: 261 EGQSDVMGAFISHYEDIFHTEGVSQIEECLHNFPKKVTQQLNNKLILAVSDLEITEAVNK 320
+ D+ SH++ ++ +E V E ++ P VT++ N +L+ +S E+ EAV
Sbjct: 267 FVEEDLGRLADSHFKLLYSSEDVGITLEDWNSIPAIVTEEQNAQLMAQISREEVREAVFD 446
Query: 321 LGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIKEFFLSENLSSEINET 368
+ K PGPDG+N FF+ W + D + +EF + L IN+T
Sbjct: 447 INPHKCPGPDGMNVFFFQQFWDTMGDDLTSMAQEFLRTGKLEEGINKT 590
Score = 59.7 bits (143), Expect(2) = 2e-33
Identities = 30/75 (40%), Positives = 46/75 (61%)
Frame = +1
Query: 360 NLSSEINETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDSLISPNQS 419
NL E + L+PK + +V+FRPIS CN K++S+++ RLK L +I+ Q+
Sbjct: 565 NLKRESTKQTSGLVPKKLEAKRLVEFRPISLCNVAYKIVSKVLSKRLKSVLPWIITETQA 744
Query: 420 AFVGGRLIQDNIVVA 434
AF +LI DNI++A
Sbjct: 745 AFGRRQLISDNILIA 789
>BG587108 similar to PIR|G96509|G9 protein F27F5.21 [imported] - Arabidopsis
thaliana, partial (17%)
Length = 677
Score = 87.8 bits (216), Expect(2) = 5e-33
Identities = 47/136 (34%), Positives = 71/136 (51%)
Frame = +2
Query: 202 IKLKIDTLWRQEELYWGQRSRVKWAKYGDKNSKFFHASTIQRRNRNRIDRVRDSLGIWKE 261
+K K+ ++ EE YW Q+SR W GD N KF+HA T QR RNRI + D G W
Sbjct: 8 LKEKLQEAYKDEEDYWQQKSRNMWHISGDLNKKFYHALTKQRHARNRIVGLYDYDGNWIT 187
Query: 262 GQSDVMGAFISHYEDIFHTEGVSQIEECLHNFPKKVTQQLNNKLILAVSDLEITEAVNKL 321
+ V + ++ED+F + + L +T Q+N +L+ ++ E+ A+ +
Sbjct: 188 EEQGVEKVAVDYFEDLFQRTTPTGFDGFLDEITSSITPQMNQRLLRLATEEEVRLALFIM 367
Query: 322 GGLKAPGPDGLNGLFF 337
KAPGPDG+ L F
Sbjct: 368 HPEKAPGPDGMTTLLF 415
Score = 73.2 bits (178), Expect(2) = 5e-33
Identities = 38/89 (42%), Positives = 51/89 (56%)
Frame = +3
Query: 336 FFKNHWGAIKDTVCPAIKEFFLSENLSSEINETIVALIPKVDSPESVVQFRPISCCNYIL 395
FF++ W IK + + F S L + +N T + LIPK P + + RPIS CN
Sbjct: 411 FFQHSWHIIKMDLLKMVNSFLASGKLDTRLNTTNICLIPKKKRPTRMTELRPISLCNVGY 590
Query: 396 KVISRIMVTRLKEDLDSLISPNQSAFVGG 424
K+IS+++ RLK L SLIS QSAFV G
Sbjct: 591 KIISKVLCQRLKVCLPSLISETQSAFVHG 677
>TC83226 weakly similar to PIR|G86419|G86419 probable reverse transcriptase
100033-105622 [imported] - Arabidopsis thaliana, partial
(2%)
Length = 885
Score = 114 bits (285), Expect = 2e-25
Identities = 90/306 (29%), Positives = 149/306 (48%), Gaps = 11/306 (3%)
Frame = +3
Query: 882 WPHTPRGDYTVNSGFRVARN--NTIITQTHSSSSHVISEDLWNTIWSSHVPQKVKVFLWK 939
W H P G Y+V SG+ R I T +SS + +W IWS H + KV LW+
Sbjct: 6 WMHNPTGIYSVKSGYNTLRTWQTQQINNTSTSSDETL---IWKKIWSLHTIPRHKVLLWR 176
Query: 940 ASHNSLAVKYNLWRKRISPSGQCPVCCDSLETVEHLFLVCPWTRAVWFGSSLQWIVTLEG 999
++SL V+ +L ++ I CP C ET+ HLF+ CP ++ VWFGS+L + +
Sbjct: 177 ILNDSLPVRSSLRKRGIQCYPLCPRCHSKTETITHLFMSCPLSKRVWFGSNL--CINFDN 350
Query: 1000 MGPFDSWL--LQRITILKRLSQDFDREFSL-LASLLWSIWRGRNNSVFKAICPDPEFTIQ 1056
+ P +++ L + K D ++ +A++++++W RN SV + IQ
Sbjct: 351 L-PNPNFIN*LYEAIL*K------DECITI*IAAIIYNLWHARNLSVLEDQTILEMDIIQ 509
Query: 1057 QATRLLSTMDLAK---PVKEDRIIESIQSQRTRASD--WIPPEGNSLKINVDASWVENLP 1111
+A+ +S A P R +SQ A + W P +K+N DA+ ++N
Sbjct: 510 RASNCISDYKQANTQAPPSMARTGYDPRSQHRPAKNTKWKRPNLGLVKVNTDAN-LQNHG 686
Query: 1112 QAALGVLIRDKYSTLL-SGTHAKIYCSSPLTAEACAIREGLNLAYNLGCTEVVLESDNKS 1170
+ LG++IRD+ ++ + T L AEA A+ G+ A + G +V E DN+
Sbjct: 687 KWGLGIIIRDEVGLVMAASTWETDGNDRALEAEAYALLTGMRFAKDCGFXKVXFEGDNEK 866
Query: 1171 LVEACK 1176
L++ K
Sbjct: 867 LMKMVK 884
>TC83437 weakly similar to PIR|D86384|D86384 unknown protein [imported] -
Arabidopsis thaliana, partial (6%)
Length = 951
Score = 108 bits (270), Expect = 1e-23
Identities = 95/348 (27%), Positives = 157/348 (44%), Gaps = 13/348 (3%)
Frame = +2
Query: 352 IKEFFLSENLSSEINETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLD 411
+ EF + L IN T +ALIPKVD+P+ + FRPIS + K++ +++ RL+ +
Sbjct: 11 VSEFHRNRKLFKGINSTFIALIPKVDNPQRLNDFRPISLVGSLYKILGKLLANRLRVVIG 190
Query: 412 SLISPNQSAFVGGRLIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIE 471
S+IS QSAFV R I + + + Q + L+ + K + L W
Sbjct: 191 SVISDAQSAFVKNRQILEMVFL*QMRLWMRLRN*R-------------KIFCCLRWILKR 331
Query: 472 RTLLAYG-----------FHPTWIDRVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPL 520
L+ G F W + V AT + VNG SP+ + + L Q
Sbjct: 332 LITLSIGLIWILF*VGMSFLVLWRKWIKECVSTATTSVLVNG--SPTNVLMKSLVQTQLF 505
Query: 521 SPYLFVLATDVLSFMLSQAQQEGKFFGLRFTAESPALTHLFFADDSLLFAEASVREATSI 580
+ Y F + V+ ++HL FA+D+LL + ++
Sbjct: 506 TRYSFGVVNPVV------------------------VSHLQFANDTLLLETKNWANIRAL 613
Query: 581 IQVLNLYNRASGQKINVAKSGLIFGKLAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGR 640
L ++ SG K+N KSGL+ +AP + A++L + P YLG+P I G
Sbjct: 614 RAALVIF*AMSGLKVNFHKSGLVCVNIAP-SWLSEAASVLSWKVGKVPFLYLGMP-IEGN 787
Query: 641 NKSHSLVW--IEEKVKEKLEGWKETLLNQAGKEVLIKAIIQAIPSYAM 686
++ S W I ++K +L GW L+ G+ VL+K+++ ++ YA+
Sbjct: 788 SRRLSF-WEPIVNRIKARLTGWNSRFLSFGGRLVLLKSVLTSLSVYAL 928
>TC81386 similar to GP|10140689|gb|AAG13524.1 putative non-LTR retroelement
reverse transcriptase {Oryza sativa (japonica
cultivar-group)}, partial (1%)
Length = 798
Score = 107 bits (268), Expect = 2e-23
Identities = 64/235 (27%), Positives = 117/235 (49%), Gaps = 5/235 (2%)
Frame = -1
Query: 8 WCLIGDFNDILYAHEKEGIRPQAPSVLQRFREFVHCSGLMDVALKGNRFTWQSNPRDGFV 67
WC IGDFN IL +HE +G A + F+++ + L + +G+ FTW + R
Sbjct: 741 WCCIGDFNTILGSHEHQGSHTPARLPMLDFQQWSDVNNLFHLPTRGSAFTWTNGRRGRNN 562
Query: 68 TREKLDRVLANWAWRDLFPNASALAYPQVTSDHSPILLNPLSPS-RSKTPFKYEVFWDEH 126
TR++LDR + N D + SA ++ SDH PIL + + + + FK+ W H
Sbjct: 561 TRKRLDRSIVNQLMIDNCESLSACTLTKLRSDHFPILFELQTQNIQFSSSFKFMKMWSAH 382
Query: 127 EQCKGIVTQGWNRPTLHDDCWINLSNRIQSSKQNLWS*QKRTFRAADKEIVRLKQEMHRM 186
C I+ Q W + ++ L+ ++++ K+ L K TF ++ +E+ +
Sbjct: 381 PDCINIIKQCWANQVVGCPMFV-LNQKLKNLKEVLKVWNKNTFGNVHSQVDNAYKELDDI 205
Query: 187 EERPNHL----VDWAGVRVIKLKIDTLWRQEELYWGQRSRVKWAKYGDKNSKFFH 237
+ + + + V + +L +++ EE++W ++S+V W GD+N+ FFH
Sbjct: 204 QVKIDSIGYSDVLMDQEKAAQLNLESALNIEEVFWHEKSKVNWHCEGDRNTAFFH 40
>BG647708 weakly similar to GP|13786450|gb| putative reverse transcriptase
{Oryza sativa}, partial (9%)
Length = 708
Score = 102 bits (253), Expect = 1e-21
Identities = 51/107 (47%), Positives = 70/107 (64%)
Frame = +1
Query: 510 PGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQEGKFFGLRFTAESPALTHLFFADDSLLF 569
P +GLRQGDPLSPYLF+L +VLS +L + + G++ P +THL FADDSLLF
Sbjct: 4 PEKGLRQGDPLSPYLFILCANVLSGLLKREGNKQNLHGIQVARSDPKITHLLFADDSLLF 183
Query: 570 AEASVREATSIIQVLNLYNRASGQKINVAKSGLIFGKLAPFRNKRDI 616
A A++ EA +I+QVL+ Y ASGQ +N KS + + + P + K I
Sbjct: 184 ARANLTEAATIMQVLHSYQSASGQLVNFEKSEVSYSQNVPNQEKEMI 324
Score = 39.3 bits (90), Expect(2) = 2e-04
Identities = 26/95 (27%), Positives = 40/95 (41%)
Frame = +3
Query: 819 NWLSSGEALVKPINAADLKVSDLISPNGEGWNDNLIKGLFQPELAIKILQTPVSKFNQAD 878
+W+ S + L V +LI + + WN +LI F A +I++ P+S D
Sbjct: 345 DWIPSKREFKLNHVSGSLSVDELIDYDTKQWNRDLIFHSFNNYAAHQIIKIPLSMRQPED 524
Query: 879 VIFWPHTPRGDYTVNSGFRVARNNTIITQTHSSSS 913
I W G Y+V S + Q SSS+
Sbjct: 525 KIIWHWEKDGIYSVRSAHHALCDENFSNQAESSSA 629
Score = 25.0 bits (53), Expect(2) = 2e-04
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = +2
Query: 920 LWNTIWSSHVPQKVKVFLWK 939
+W IW++ + V+ FLW+
Sbjct: 641 IWKAIWNTPASRSVQNFLWR 700
>BG586862
Length = 804
Score = 90.5 bits (223), Expect = 4e-18
Identities = 77/250 (30%), Positives = 113/250 (44%), Gaps = 1/250 (0%)
Frame = -1
Query: 924 IWSSHVPQKVKVFLWKASHNSLAVKYNLWRKRISPSGQCPVCCDSLETVEHLFLVCPWTR 983
+W + K FLW+ HN+L VK L ++ I S CP C +ETV+HLFL C T+
Sbjct: 654 VWGIKTIPRHKSFLWRLLHNALPVKDELHKRGIRCSLLCPRCESKIETVQHLFLNCEVTQ 475
Query: 984 AVWFGSSLQWIVTLEGMGPFDSWLLQRITILKRLSQDFDREFSLLASLLWSIWRGRNNSV 1043
WFGS L G+ F W+ I L D + +L A LL+SIW RN V
Sbjct: 474 KEWFGSQLGINFHSSGVLHFHDWITNFI-----LKNDEETIIALTA-LLYSIWHARNQKV 313
Query: 1044 FKAICPDPEFTIQQATRLLSTMDLAKPVKEDRIIESIQSQRTRASDWIPPEGNSLKINVD 1103
F+ I + IQ+A+ L + +A+ SD + P S I
Sbjct: 312 FENIDVPGDVVIQRASSSLHSFKMAQ-----------------VSDSVLP---SNAIPSY 193
Query: 1104 ASWVENLPQAALGVLIRD-KYSTLLSGTHAKIYCSSPLTAEACAIREGLNLAYNLGCTEV 1162
+ W +GV+ R+ + + SGT + TAEA I + + A + G ++
Sbjct: 192 SLW-------GIGVVARNCEGLAMASGTWLRHGIPCATTAEAWGIYQAMVFAGDCGFSKF 34
Query: 1163 VLESDNKSLV 1172
ESDN +L+
Sbjct: 33 EFESDNGNLL 4
>BG587113 weakly similar to PIR|A84888|A8 hypothetical protein At2g45230
[imported] - Arabidopsis thaliana, partial (10%)
Length = 767
Score = 89.0 bits (219), Expect = 1e-17
Identities = 60/230 (26%), Positives = 95/230 (41%), Gaps = 17/230 (7%)
Frame = -3
Query: 779 AALGRNPSWMWRSLLAGRDFISRYSRWVVGDGKSVQVWGDNWLSSGEALVKPINAADLKV 838
A LG S+ WRS+ + + I + ++ ++G+G++ +W + N +
Sbjct: 756 APLGSWASYAWRSIHSAQHLIKQGAKVIIGNGENTNIWEREMAWKLTCVTNHPNKHSSRA 577
Query: 839 -------------SDLISPNGEGWNDNLIKGLFQPELAIKIL----QTPVSKFNQADVIF 881
SD P N NLI +F KIL Q P+ + D
Sbjct: 576 Y*APTLYGYEGCRSD--DPMRRERNANLINSIFPEGTRRKILSIHPQGPIGE----DSYS 415
Query: 882 WPHTPRGDYTVNSGFRVARNNTIITQTHSSSSHVISEDLWNTIWSSHVPQKVKVFLWKAS 941
W ++ G Y+V SG+ V N + +DL+ +W + KV+ FLW+
Sbjct: 414 WEYSKSGHYSVKSGYYVQTNIIAAANQRGTVDQPSLDDLYQRVWKYNTSPKVRHFLWRCI 235
Query: 942 HNSLAVKYNLWRKRISPSGQCPVCCDSLETVEHLFLVCPWTRAVWFGSSL 991
NSL N+ + IS G C C ETV H+ CP+ R +W S +
Sbjct: 234 SNSLPTAANMRSRHISKDGSCSRCGMESETVNHILFQCPYARLIWATSPI 85
>TC77455 similar to GP|22335695|dbj|BAC10549. nine-cis-epoxycarotenoid
dioxygenase1 {Pisum sativum}, partial (43%)
Length = 1865
Score = 57.0 bits (136), Expect(2) = 8e-17
Identities = 55/191 (28%), Positives = 82/191 (42%), Gaps = 18/191 (9%)
Frame = -2
Query: 807 VGDGKSVQVWGDNWLSS---GEALVK---PINAADLKVSDLISPNGEG------WNDNLI 854
VGDG+S W D W SS E+ + P + DL N EG W L
Sbjct: 700 VGDGRSSFFWKDAWDSSVPLRESFPRAFFPYRLLKMGCGDLWDMNAEGVRWRLYWR-RLE 524
Query: 855 KGLFQPELAIKIL---QTPVSKFNQADVIFWPHTPRGDYTVNSGFRVARNNTIITQTHSS 911
++ E +++L + V ++ AD+ W G ++VNS + + +N ++ S
Sbjct: 523 LFEWEKERLLELLGRLEGVVLRY-WADIWVWKPDKEGVFSVNSCYFLLQNLRLLEDRLSY 347
Query: 912 SSHVISEDLWNTIWSSHVPQKVKVFLWKASHNSLAVKYNLWRK---RISPSGQCPVCCDS 968
VI +L W S P KV F W + + NL ++ R+ S +C C
Sbjct: 346 EEEVIFREL----WKSKAPAKVLAFSWTLFLDRIPTMVNLGKRRLLRVEDSKRCVFCGCQ 179
Query: 969 LETVEHLFLVC 979
ETV HLFL C
Sbjct: 178 DETVVHLFLHC 146
Score = 49.3 bits (116), Expect(2) = 8e-17
Identities = 22/57 (38%), Positives = 35/57 (60%)
Frame = -3
Query: 727 LSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPNTSFMFAALGR 783
L + KGG+G RD+R N++ LA+ WR+L + +LW V++ +Y P S +GR
Sbjct: 966 LPRCKGGLGVRDIRLVNVSLLAKWWWRLLQDQSSLWKEVLEDIYGPRVSSRTMMVGR 796
>TC80819 weakly similar to GP|10140689|gb|AAG13524.1 putative non-LTR
retroelement reverse transcriptase {Oryza sativa
(japonica cultivar-group)}, partial (2%)
Length = 1262
Score = 52.8 bits (125), Expect(4) = 2e-15
Identities = 33/123 (26%), Positives = 53/123 (42%), Gaps = 2/123 (1%)
Frame = +2
Query: 866 ILQTPVSKFNQADVIFWPHTPRGDYTVNSGFRVARNNTIITQTHSSSSHVISEDLWNTIW 925
+L V + N D W P Y+V +R +S+ H+ L + +W
Sbjct: 482 LLNNFVLQDNVNDKWRWLLDPVNGYSVKVFYRYI----------TSTGHISDRSLVDDVW 631
Query: 926 SSHVPQKVKVFLWKASHNSLAVKYNLWRKRI--SPSGQCPVCCDSLETVEHLFLVCPWTR 983
H+P KV +F+W+ N L K NL + + + + C C E+ HLFL C
Sbjct: 632 HKHIPSKVSLFVWRLLRNRLPTKDNLVHRGVLLATNAACVCGCVDSESTTHLFLHCNVFC 811
Query: 984 AVW 986
++W
Sbjct: 812 SLW 820
Score = 33.5 bits (75), Expect(4) = 2e-15
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 743 NLAFLARQAWRVLTNPEALWVRVMKSLY 770
NL+ L + WR+L + E LW RV+K+ Y
Sbjct: 52 NLSLLGKWCWRLLVDKEGLWHRVLKARY 135
Score = 30.4 bits (67), Expect(4) = 2e-15
Identities = 21/85 (24%), Positives = 31/85 (35%), Gaps = 10/85 (11%)
Frame = +3
Query: 782 GRNPSWMWRSLLAGRD--------FISRYSRWVVGDGKSVQVWGDNWLSSGEALVKPINA 833
GR S W+++ R+ + R VVGDG+ W D W +K
Sbjct: 165 GRQSSMWWKTICKVREGVGEGVGNWFEENIRMVVGDGRDAFFWYDTWAGDVPLRLKYPRL 344
Query: 834 ADLKVSD--LISPNGEGWNDNLIKG 856
DL + + GW L +G
Sbjct: 345 LDLAMDKECKVGLTWGGWGGRLTEG 419
Score = 23.9 bits (50), Expect(4) = 2e-15
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +1
Query: 1023 REFSLLASL-LWSIWRGRNNSVFK 1045
+ FS + + W IW+ RNN +F+
Sbjct: 913 KSFSFILQVNFWVIWKERNNRLFQ 984
>BG585866
Length = 828
Score = 72.4 bits (176), Expect = 1e-12
Identities = 52/188 (27%), Positives = 82/188 (42%), Gaps = 6/188 (3%)
Frame = +3
Query: 805 WVVGDGKSVQVWGDNWLSSG----EALVKPINAADLKVSDLISPNGEGWNDNLIKGLFQP 860
W G G S W NW S G +A I+ L V D+ + G+ + + +
Sbjct: 123 WRAGSGNS-SFWYTNWSSLGLLGTQAPFVDIHDLHLTVKDVFTTGGQ--HTQSLYTILPT 293
Query: 861 ELAIKILQTPVSKFNQA--DVIFWPHTPRGDYTVNSGFRVARNNTIITQTHSSSSHVISE 918
++A I T ++ FN + D WPH G YT SG+ + T ++SS
Sbjct: 294 DIAEVINNTHLN-FNASIGDAYIWPHNSNGVYTAKSGYSWILSQTETVNYNNSS------ 452
Query: 919 DLWNTIWSSHVPQKVKVFLWKASHNSLAVKYNLWRKRISPSGQCPVCCDSLETVEHLFLV 978
W+ IW +P+K K FLW A HN++ L + + S C C + E+ H
Sbjct: 453 --WSWIWRLKIPEKYKFFLWLACHNAVPTLSLLNHRNMVNSAICSRCGEHEESFFHCVRD 626
Query: 979 CPWTRAVW 986
C +++ +W
Sbjct: 627 CRFSKIIW 650
>TC93101
Length = 675
Score = 69.7 bits (169), Expect = 7e-12
Identities = 62/229 (27%), Positives = 100/229 (43%), Gaps = 12/229 (5%)
Frame = -1
Query: 942 HNSLAVKYNLWRKRISPSGQCPVCCDSLETVEHLFLVCPWTRAVWFGSSLQWIVTLEGMG 1001
H +L V+ L ++ ++ CP C +LET H+F+ C T+ VWFGS L
Sbjct: 672 HTTLPVRXELNKRGVNCPPLCPRCYFNLETTNHIFMSCERTQRVWFGSQLSIRFPDNSTI 493
Query: 1002 PFDSWLLQRITILKRLSQDFDREFSLLASLLWSIWRGRNNSVFKAICPDPEFTIQQATRL 1061
F WL I S + ++++ +SIW RN ++F+ + IQ A
Sbjct: 492 NFSDWLFDAI------SNQTEEIIIKISAITYSIWHARNKAIFENQFVSEDTIIQ*AQNS 331
Query: 1062 LSTMDLA--KPVKEDRIIESI------QSQRTRA---SDWIPPEGNSLKINVDASWVENL 1110
+ + A KP + ++ S+ + R R+ S W P N LK N DA+ ++
Sbjct: 330 ILAYEQATIKPQNPNIVLSSLSATSNTNTTRRRSNVRSRWQKPLNNILKANCDAN-LQVQ 154
Query: 1111 PQAALGVLIRD-KYSTLLSGTHAKIYCSSPLTAEACAIREGLNLAYNLG 1158
+ LG +IR+ ++ T TAE AI + LA + G
Sbjct: 153 GRWGLGCIIRNADGEAKVTATWCINGFDCAATAETYAILAAMYLAKDYG 7
>BE248682 similar to GP|18568269|gb putative gag-pol polyprotein {Zea mays},
partial (1%)
Length = 441
Score = 64.3 bits (155), Expect = 3e-10
Identities = 42/124 (33%), Positives = 61/124 (48%)
Frame = +3
Query: 512 RGLRQGDPLSPYLFVLATDVLSFMLSQAQQEGKFFGLRFTAESPALTHLFFADDSLLFAE 571
RGL+QGDPL+P+LF+L + +S ++ A F G ++HL +ADD+L
Sbjct: 24 RGLKQGDPLAPFLFLLVAEGISGLMKNAVNRNLFQGFDVKRGGTRVSHLQYADDTLCIGM 203
Query: 572 ASVREATSIIQVLNLYNRASGQKINVAKSGLIFGKLAPFRNKRDIANLLHMPIWDDPGHY 631
+V ++ +L + ASG K+N KS LI G P L+ P Y
Sbjct: 204 PTVDNLWTLKALLQGFEMASGLKVNFHKSSLI-GINVPRDFMEAACRFLNCREESIPFIY 380
Query: 632 LGLP 635
LGLP
Sbjct: 381 LGLP 392
>BQ148771
Length = 680
Score = 63.5 bits (153), Expect = 5e-10
Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 1/143 (0%)
Frame = -3
Query: 652 KVKEKLEGWKETLLNQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQ 711
+V L WK L+ A + L K++I+A+P Y M PK + L F W
Sbjct: 588 QVHVMLANWKANHLSLARRVTLAKSVIEAVPLYPMMTTIIPKACIEEIQKLQRKFVWGDT 409
Query: 712 GKDRGIHWRSWDKMTLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYF 771
R H W+ M+ K G+G R L N A + + W + + +L VM+ Y
Sbjct: 408 EVSRRYHAVGWETMSKPKTIYGLGLRRLDVMNKACIMKLGWSIYSGSNSLCTEVMRGKYQ 229
Query: 772 PNTSFMFAALGR-NPSWMWRSLL 793
+ S L + S +W++L+
Sbjct: 228 RSESLEEIFLEKPTDSSLWKALV 160
>BG584442
Length = 775
Score = 62.0 bits (149), Expect = 1e-09
Identities = 36/113 (31%), Positives = 60/113 (52%), Gaps = 1/113 (0%)
Frame = +1
Query: 652 KVKEKLEGWKETLLNQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSLNALVANFWWKSQ 711
K +K+ + L++ EV+IK +Q+I SY M+I + + + ++ F W
Sbjct: 370 KFDKKINF*RNKCLSKVM*EVMIKYALQSISSYVMSIFLLLNSQVDEIEKIMNTFSWVHV 549
Query: 712 GKDR-GIHWRSWDKMTLSKEKGGMGFRDLRTQNLAFLARQAWRVLTNPEALWV 763
G++R G+HW S +K+ + K GGMGF D T N+ L +Q L N L++
Sbjct: 550 GENRKGMHWMS*EKLFVHKNYGGMGFTDFTTFNIPMLGKQV*SFLLNRTTLFL 708
>AJ497561 weakly similar to GP|10140689|gb putative non-LTR retroelement
reverse transcriptase {Oryza sativa (japonica
cultivar-group)}, partial (2%)
Length = 621
Score = 59.7 bits (143), Expect = 7e-09
Identities = 25/68 (36%), Positives = 41/68 (59%)
Frame = +2
Query: 760 ALWVRVMKSLYFPNTSFMFAALGRNPSWMWRSLLAGRDFISRYSRWVVGDGKSVQVWGDN 819
+L +++K YFP F +A LG NPS+ WRSLL+ + ++ RW++GDG + V +
Sbjct: 410 SLLSKILKFKYFPQWDFSYANLGHNPSFTWRSLLSTQSLLTLGHRWMIGDGSQINVSSMS 589
Query: 820 WLSSGEAL 827
W+ + L
Sbjct: 590 WIRNRPTL 613
>BG646730
Length = 799
Score = 58.2 bits (139), Expect = 2e-08
Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 6/139 (4%)
Frame = +1
Query: 781 LGRNPSWMWRSLLAGRDFISRYSRWVVGDGKSVQVWGDNWLSSGEALVKPINAADLK--- 837
+G PS+ WRS+ +D I SRW + +G++V++W D+WL + D +
Sbjct: 385 IGNQPSYAWRSMFNIKDVIDLGSRWSISNGQNVRIWKDDWLPNQTGFKVCSPMVDFEEAT 564
Query: 838 -VSDLISPNGEGWNDNLIKGLFQPELAIKILQTPVS--KFNQADVIFWPHTPRGDYTVNS 894
+S+LI N + +L++ +F A +IL P+S + +++W +Y+V S
Sbjct: 565 CISELIDTNTKSSKRDLVRNVFSAFEAKQILNIPLSWRLWPDRRILYWERD--RNYSVRS 738
Query: 895 GFRVARNNTIITQTHSSSS 913
+ + T + SSS+
Sbjct: 739 AHHLIKVATKDSPEVSSSN 795
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.322 0.136 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,024,854
Number of Sequences: 36976
Number of extensions: 700726
Number of successful extensions: 3328
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 3248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3307
length of query: 1246
length of database: 9,014,727
effective HSP length: 107
effective length of query: 1139
effective length of database: 5,058,295
effective search space: 5761398005
effective search space used: 5761398005
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Lotus: description of TM0342b.10