TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0335b.2
         (106 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC76934 similar to GP|21553909|gb|AAM62992.1 unknown {Arabidopsi...    29  0.25
BG449813 similar to PIR|T01422|T01 GTP pyrophosphokinase relA ho...    28  0.42
AW256367                                                               27  0.94
TC76585 similar to SP|P32292|ARG2_PHAAU Indole-3-acetic acid ind...    27  1.2
TC76960 similar to GP|1841870|gb|AAB68395.1| elongation factor 1...    27  1.2
TC91162 similar to PIR|T06754|T06754 DNA-directed RNA polymerase...    26  2.1
TC78766 similar to SP|P32292|ARG2_PHAAU Indole-3-acetic acid ind...    26  2.7
TC81319 similar to PIR|T04862|T04862 probable serine/threonine-s...    25  3.6
TC87653 similar to PIR|D96799|D96799 hypothetical protein F22K20...    25  3.6
CB894058 similar to PIR|T02367|T0 hypothetical protein T8F5.22 -...    25  4.7
TC80835 weakly similar to PIR|F84747|F84747 probable SWI/SNF com...    25  6.1
TC76959 similar to GP|1841870|gb|AAB68395.1| elongation factor 1...    25  6.1
BI311277 homologue to GP|22536010|gb LEC1-like protein {Phaseolu...    25  6.1
TC76961 similar to GP|1841870|gb|AAB68395.1| elongation factor 1...    25  6.1
TC86173 similar to GP|15810175|gb|AAL06989.1 At2g03890/T18C20.9 ...    24  8.0

>TC76934 similar to GP|21553909|gb|AAM62992.1 unknown {Arabidopsis
           thaliana}, partial (29%)
          Length = 918

 Score = 29.3 bits (64), Expect = 0.25
 Identities = 16/51 (31%), Positives = 25/51 (48%)
 Frame = +1

Query: 22  NRVMKFSGTTAKAAAAESSEEGVPKIISGKTEDSSAIWVPHPRTGIYYPKG 72
           +R   +S    K A  +   E VP  +   T+ S+  W P+P TG++ P G
Sbjct: 250 SRRAAYSSVYDKNADDQIHSEPVPDDVIQATQ-STKYWAPNPHTGVFGPPG 399


>BG449813 similar to PIR|T01422|T01 GTP pyrophosphokinase relA homolog T2H3.9
           - Arabidopsis thaliana, partial (19%)
          Length = 651

 Score = 28.5 bits (62), Expect = 0.42
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 18  RRAENRVMKFSGTTAKAAAAESSEEGVPKIISGKTEDSSA 57
           R A +++MKF    A  +AA+ + E V   +S   EDS +
Sbjct: 62  RSARHKIMKFLREQAALSAADITTEAVNDFVSDSEEDSES 181


>AW256367 
          Length = 385

 Score = 27.3 bits (59), Expect = 0.94
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +1

Query: 28  SGTTAKAAAAESSEEGVPKIISGKTEDS-SAIWVPHPRTGIYYPKGHECVMEDVPEGAAR 86
           +G    A   E S+   P+I   K E++   IW     TG   P+  + V + +P+G   
Sbjct: 82  NGPQVTAGYPEFSKSKTPEIPDKKAENNMQGIWEATSMTGSIVPEVPKVVADGIPQGTTG 261

Query: 87  F 87
           +
Sbjct: 262 Y 264


>TC76585 similar to SP|P32292|ARG2_PHAAU Indole-3-acetic acid induced
           protein ARG2. [Mung bean  Vigna radiata] {Phaseolus
           aureus}, partial (67%)
          Length = 919

 Score = 26.9 bits (58), Expect = 1.2
 Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 15/60 (25%)
 Frame = +1

Query: 27  FSGTTAK---AAAAESSEEGVPKIIS-----GKT---EDSSAI----WVPHPRTGIYYPK 71
           FS T  +   AAA ES+   V  ++S     G T   ED S+     WVP P TG Y P+
Sbjct: 214 FSNTLTRRGYAAATESATRVVGGVVSVGNKMGPTKSGEDGSSTYKVSWVPDPVTGYYKPE 393


>TC76960 similar to GP|1841870|gb|AAB68395.1| elongation factor 1-beta
           {Pimpinella brachycarpa}, complete
          Length = 973

 Score = 26.9 bits (58), Expect = 1.2
 Identities = 17/69 (24%), Positives = 29/69 (41%)
 Frame = -1

Query: 8   KSTLLILRGARRAENRVMKFSGTTAKAAAAESSEEGVPKIISGKTEDSSAIWVPHPRTGI 67
           +S+      +  + N+    S +++ +AA  S   GV  + S   EDS+    P P T  
Sbjct: 433 RSSAAFFSSSVSSPNKSTSSSSSSSASAAFVSETGGVATVSSATREDSTVTPDPSPETPA 254

Query: 68  YYPKGHECV 76
              K   C+
Sbjct: 253 ILNKASMCL 227


>TC91162 similar to PIR|T06754|T06754 DNA-directed RNA polymerase I 190K
           chain homolog F15B8.150 - Arabidopsis thaliana, partial
           (11%)
          Length = 778

 Score = 26.2 bits (56), Expect = 2.1
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +3

Query: 20  AENRVMKFSGTTAKAAAAESSEEGVPKIISGKTEDSSAIWVPHPRTG 66
           A+  ++ F   ++     E   + VP+++SGKT      W   PR G
Sbjct: 276 AKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFPSWDCSPRAG 416


>TC78766 similar to SP|P32292|ARG2_PHAAU Indole-3-acetic acid induced
           protein ARG2. [Mung bean  Vigna radiata] {Phaseolus
           aureus}, partial (66%)
          Length = 704

 Score = 25.8 bits (55), Expect = 2.7
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 32  AKAAAAESSEEGVPKIISGKTEDSSAIWVPHPRTGIYYPK 71
           A    A S++ G  K+ +     +   WVP P TG Y P+
Sbjct: 176 ATRGVATSTKSGEDKVANA----NKVAWVPDPVTGYYKPE 283


>TC81319 similar to PIR|T04862|T04862 probable serine/threonine-specific
          protein kinase (EC 2.7.1.-) F28A21.110 - Arabidopsis
          thaliana, partial (26%)
          Length = 678

 Score = 25.4 bits (54), Expect = 3.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 61 PHPRTGIYYPKGHECVMEDV 80
          PHPR+ I +PK H  V  D+
Sbjct: 48 PHPRSFILHPKHHRTVTLDL 107


>TC87653 similar to PIR|D96799|D96799 hypothetical protein F22K20.13
           [imported] - Arabidopsis thaliana, partial (38%)
          Length = 1068

 Score = 25.4 bits (54), Expect = 3.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 90  TYWFRNDDGVGCTNTQP 106
           +YWFR + GV C++  P
Sbjct: 220 SYWFR*NGGVSCSDASP 270


>CB894058 similar to PIR|T02367|T0 hypothetical protein T8F5.22 - Arabidopsis
           thaliana, partial (13%)
          Length = 771

 Score = 25.0 bits (53), Expect = 4.7
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +3

Query: 71  KGHECVMEDVPEGAARFTQT 90
           +GH+CV E++P+ A R+ QT
Sbjct: 132 EGHQCVFENMPQ-ADRYPQT 188


>TC80835 weakly similar to PIR|F84747|F84747 probable SWI/SNF complex
           subunit SW13 [imported] - Arabidopsis thaliana, partial
           (34%)
          Length = 830

 Score = 24.6 bits (52), Expect = 6.1
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +2

Query: 44  VPKIISGKTEDSSAIWVPHPRTGIYYPKGHECVMEDVPEGAARFTQTYWFRN 95
           VP   +  + D++ I VP       +   HEC + ++PE +       ++RN
Sbjct: 164 VPLPEAKTSSDANLILVPSHSRWFSWDSIHECEIRNIPESSKNPRVYKYYRN 319


>TC76959 similar to GP|1841870|gb|AAB68395.1| elongation factor 1-beta
           {Pimpinella brachycarpa}, complete
          Length = 996

 Score = 24.6 bits (52), Expect = 6.1
 Identities = 17/69 (24%), Positives = 28/69 (39%)
 Frame = -1

Query: 8   KSTLLILRGARRAENRVMKFSGTTAKAAAAESSEEGVPKIISGKTEDSSAIWVPHPRTGI 67
           +S+      +  + N+    S +++ +AA  S   GV    S   EDS+    P P T  
Sbjct: 450 RSSAAFFSSSVSSPNKSTSSSSSSSASAAFVSETGGVATASSATREDSTVTPDPSPETPE 271

Query: 68  YYPKGHECV 76
              K   C+
Sbjct: 270 ILNKASMCL 244


>BI311277 homologue to GP|22536010|gb LEC1-like protein {Phaseolus
           coccineus}, partial (58%)
          Length = 793

 Score = 24.6 bits (52), Expect = 6.1
 Identities = 10/28 (35%), Positives = 15/28 (52%)
 Frame = +1

Query: 79  DVPEGAARFTQTYWFRNDDGVGCTNTQP 106
           D  E A+R T+  W+R    + C  T+P
Sbjct: 139 DEHEAASRRTEQQWYRTRQ*MHCEGTRP 222


>TC76961 similar to GP|1841870|gb|AAB68395.1| elongation factor 1-beta
           {Pimpinella brachycarpa}, partial (95%)
          Length = 815

 Score = 24.6 bits (52), Expect = 6.1
 Identities = 17/69 (24%), Positives = 28/69 (39%)
 Frame = -1

Query: 8   KSTLLILRGARRAENRVMKFSGTTAKAAAAESSEEGVPKIISGKTEDSSAIWVPHPRTGI 67
           +S+      +  + N+    S +++ +AA  S   GV    S   EDS+    P P T  
Sbjct: 428 RSSAAFFSSSVSSPNKSTSSSSSSSASAAFVSETGGVATASSATREDSTVTPDPSPETPE 249

Query: 68  YYPKGHECV 76
              K   C+
Sbjct: 248 ILNKASMCL 222


>TC86173 similar to GP|15810175|gb|AAL06989.1 At2g03890/T18C20.9 {Arabidopsis
            thaliana}, partial (74%)
          Length = 2669

 Score = 24.3 bits (51), Expect = 8.0
 Identities = 12/37 (32%), Positives = 20/37 (53%), Gaps = 1/37 (2%)
 Frame = -1

Query: 33   KAAAAESSEE-GVPKIISGKTEDSSAIWVPHPRTGIY 68
            K  A ES++  G PK++ GK  D   +  PH +  ++
Sbjct: 1529 KPEANESTQSMGPPKLLEGKAHDQ*ELNPPHQKPPLF 1419


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.315    0.131    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,166,983
Number of Sequences: 36976
Number of extensions: 36327
Number of successful extensions: 145
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of query: 106
length of database: 9,014,727
effective HSP length: 82
effective length of query: 24
effective length of database: 5,982,695
effective search space: 143584680
effective search space used: 143584680
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)