BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0335a.8
(104 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC76503 homologue to GP|506629|gb|AAA50172.1|| photosystem II ty... 100 7e-23
TC76504 homologue to GP|506629|gb|AAA50172.1|| photosystem II ty... 100 7e-23
TC76509 homologue to PIR|S29904|S29904 chlorophyll a/b-binding p... 100 7e-23
TC85298 homologue to SP|P27520|CB23_PEA Chlorophyll A-B binding ... 100 9e-23
TC76609 homologue to PIR|T06411|T06411 probable chlorophyll a/b-... 100 9e-23
TC76507 homologue to GP|506629|gb|AAA50172.1|| photosystem II ty... 100 1e-22
TC76505 homologue to GP|9587207|gb|AAF89207.1| LHCII type I chlo... 100 1e-22
TC76506 homologue to GP|506629|gb|AAA50172.1|| photosystem II ty... 99 2e-22
TC76508 GP|3293555|gb|AAC25775.1| chlorophyll a/b binding protei... 99 2e-22
TC85300 homologue to PIR|S33775|S33775 chlorophyll a/b-binding p... 98 6e-22
TC76645 similar to PIR|S16294|S16294 chlorophyll a/b-binding pro... 95 5e-21
BG457482 similar to PIR|T04049|T04 chlorophyll a/b-binding prote... 95 5e-21
BQ150490 similar to PIR|T04049|T040 chlorophyll a/b-binding prot... 95 5e-21
BG456653 homologue to GP|3293555|gb| chlorophyll a/b binding pro... 91 5e-20
CA919263 similar to GP|12658406|gb light-harvesting complex II p... 90 1e-19
TC82383 similar to GP|15430554|dbj|BAB64412. light-harvesting ch... 89 3e-19
TC76410 similar to GP|4689382|gb|AAD27878.1| chlorophyll a/b bin... 87 1e-18
TC76818 homologue to GP|13265501|gb|AAG40043.2 AT3g54890 {Arabid... 84 7e-18
TC79544 similar to PIR|F96510|F96510 light-harvesting complex pr... 83 1e-17
TC85476 homologue to PIR|T51616|T51616 chlorophyll a/b-binding p... 82 3e-17
>TC76503 homologue to GP|506629|gb|AAA50172.1|| photosystem II type I
chlorophyll a/b-binding protein {Glycine max}, partial
(98%)
Length = 1148
Score = 100 bits (250), Expect = 7e-23
Identities = 49/77 (63%), Positives = 62/77 (79%)
Frame = +1
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG + D YPGG+ FDPL L++DPEAFAELKVKE+KNGRLAM + GF++QA +TGK
Sbjct: 592 PLGEVV--DPLYPGGS-FDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 762
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP +NN
Sbjct: 763 GPIENLADHLADPVNNN 813
Score = 38.9 bits (89), Expect = 3e-04
Identities = 26/75 (34%), Positives = 38/75 (50%)
Frame = +1
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + E YL G+ +PG +D LS DPE FA+ + E+ + R AM+
Sbjct: 205 GPDRVKYLGPFSGEAPS-YLTGE--FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 375
Query: 62 AWLGFYMQAALTGKG 76
LG L+ G
Sbjct: 376 GALGCVFPELLSRNG 420
>TC76504 homologue to GP|506629|gb|AAA50172.1|| photosystem II type I
chlorophyll a/b-binding protein {Glycine max}, complete
Length = 1134
Score = 100 bits (250), Expect = 7e-23
Identities = 49/77 (63%), Positives = 62/77 (79%)
Frame = +1
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG + D YPGG+ FDPL L++DPEAFAELKVKE+KNGRLAM + GF++QA +TGK
Sbjct: 583 PLGEVV--DPLYPGGS-FDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 753
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP +NN
Sbjct: 754 GPIENLADHLADPVNNN 804
Score = 38.9 bits (89), Expect = 3e-04
Identities = 26/75 (34%), Positives = 38/75 (50%)
Frame = +1
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + E YL G+ +PG +D LS DPE FA+ + E+ + R AM+
Sbjct: 196 GPDRVKYLGPFSGEAPS-YLTGE--FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 366
Query: 62 AWLGFYMQAALTGKG 76
LG L+ G
Sbjct: 367 GALGCVFPELLSRNG 411
>TC76509 homologue to PIR|S29904|S29904 chlorophyll a/b-binding protein -
English ivy (fragment), partial (53%)
Length = 481
Score = 100 bits (250), Expect = 7e-23
Identities = 49/77 (63%), Positives = 62/77 (79%)
Frame = +3
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG + D YPGG+ FDPL L++DPEAFAELKVKE+KNGRLAM + GF++QA +TGK
Sbjct: 57 PLGEVV--DPLYPGGS-FDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 227
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP +NN
Sbjct: 228 GPIENLADHLADPVNNN 278
>TC85298 homologue to SP|P27520|CB23_PEA Chlorophyll A-B binding protein 215
chloroplast precursor (LHCII type II CAB-215) (LHCP).,
complete
Length = 1099
Score = 100 bits (249), Expect = 9e-23
Identities = 52/77 (67%), Positives = 60/77 (77%)
Frame = +2
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG L D YPGGA FDPL L+ DP+AFAELKVKE+KNGRLAM + GF++QA +TGK
Sbjct: 596 PLGEGL--DPLYPGGA-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 766
Query: 76 GPVQNLLDHFSDPFHNN 92
GPVQNL DH +DP NN
Sbjct: 767 GPVQNLYDHVADPVANN 817
Score = 38.9 bits (89), Expect = 3e-04
Identities = 24/64 (37%), Positives = 35/64 (54%)
Frame = +2
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + E + YL G+ +PG +D LS DPE FA + E+ + R AM+
Sbjct: 209 GPDRPKYLGPFS-EQIPSYLTGE--FPGDYGWDTAGLSADPETFARNRELEVIHSRWAML 379
Query: 62 AWLG 65
LG
Sbjct: 380 GALG 391
>TC76609 homologue to PIR|T06411|T06411 probable chlorophyll a/b-binding
protein type III precursor - garden pea chloroplast,
complete
Length = 1500
Score = 100 bits (249), Expect = 9e-23
Identities = 45/77 (58%), Positives = 60/77 (77%)
Frame = +2
Query: 23 GDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLL 82
G+ YPGG +F+PL KD ++ ELK+KE+KNGRLAM+A LG+++QA +TG GP QNLL
Sbjct: 734 GEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQALVTGVGPYQNLL 913
Query: 83 DHFSDPFHNNLLGSLNF 99
DH +DP +NN+L SL F
Sbjct: 914 DHLADPVNNNILTSLKF 964
>TC76507 homologue to GP|506629|gb|AAA50172.1|| photosystem II type I
chlorophyll a/b-binding protein {Glycine max}, complete
Length = 1029
Score = 100 bits (248), Expect = 1e-22
Identities = 49/77 (63%), Positives = 62/77 (79%)
Frame = +1
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG + D YPGG+ FDPL L++DPEAFAELKVKE+KNGRLAM + GF++QA +TGK
Sbjct: 619 PLGEVV--DPLYPGGS-FDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 789
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP +NN
Sbjct: 790 GPLENLADHIADPVNNN 840
Score = 38.5 bits (88), Expect = 4e-04
Identities = 26/75 (34%), Positives = 37/75 (48%)
Frame = +1
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + E YL G+ +PG +D LS DPE FA+ + E+ + R AM+
Sbjct: 232 GPDRVKYLGPFSGEAPS-YLTGE--FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 402
Query: 62 AWLGFYMQAALTGKG 76
LG L G
Sbjct: 403 GALGCVFPELLARNG 447
>TC76505 homologue to GP|9587207|gb|AAF89207.1| LHCII type I chlorophyll
a/b-binding protein {Vigna radiata}, complete
Length = 1082
Score = 100 bits (248), Expect = 1e-22
Identities = 49/77 (63%), Positives = 61/77 (78%)
Frame = +1
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG + D YPGG+ FDPL L+ DPEAFAELKVKE+KNGRLAM + GF++QA +TGK
Sbjct: 601 PLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 771
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP +NN
Sbjct: 772 GPIENLADHLADPVNNN 822
Score = 37.4 bits (85), Expect = 0.001
Identities = 25/75 (33%), Positives = 37/75 (49%)
Frame = +1
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + E YL G+ +PG +D LS DPE F++ + E+ + R AM+
Sbjct: 214 GPDRVKYLGPFSGEAPS-YLTGE--FPGDYGWDTAGLSADPETFSKNRELEVIHSRWAML 384
Query: 62 AWLGFYMQAALTGKG 76
LG L G
Sbjct: 385 GALGCVFPELLARNG 429
>TC76506 homologue to GP|506629|gb|AAA50172.1|| photosystem II type I
chlorophyll a/b-binding protein {Glycine max}, complete
Length = 1057
Score = 99.4 bits (246), Expect = 2e-22
Identities = 49/77 (63%), Positives = 61/77 (78%)
Frame = +1
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG + D YPGG+ FDPL L+ DPEAFAELKVKE+KNGRLAM + GF++QA +TGK
Sbjct: 598 PLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 768
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP +NN
Sbjct: 769 GPLENLADHITDPVNNN 819
Score = 38.9 bits (89), Expect = 3e-04
Identities = 26/75 (34%), Positives = 38/75 (50%)
Frame = +1
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + E YL G+ +PG +D LS DPE FA+ + E+ + R AM+
Sbjct: 211 GPDRVKYLGPFSGEAPS-YLTGE--FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 381
Query: 62 AWLGFYMQAALTGKG 76
LG L+ G
Sbjct: 382 GALGCVFPELLSRNG 426
>TC76508 GP|3293555|gb|AAC25775.1| chlorophyll a/b binding protein {Medicago
sativa}, complete
Length = 1190
Score = 99.4 bits (246), Expect = 2e-22
Identities = 49/77 (63%), Positives = 61/77 (78%)
Frame = +2
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG + D YPGG+ FDPL L+ DPEAFAELKVKE+KNGRLAM + GF++QA +TGK
Sbjct: 617 PLGEVV--DPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 787
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP +NN
Sbjct: 788 GPLENLADHLADPVNNN 838
Score = 42.0 bits (97), Expect = 4e-05
Identities = 27/75 (36%), Positives = 39/75 (52%)
Frame = +2
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + EP YL G+ +PG +D LS DPE FA+ + E+ + R AM+
Sbjct: 230 GPDRVKYLGPFSGEPPS-YLTGE--FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 400
Query: 62 AWLGFYMQAALTGKG 76
LG L+ G
Sbjct: 401 GALGCVFPELLSRNG 445
>TC85300 homologue to PIR|S33775|S33775 chlorophyll a/b-binding protein -
garden pea, partial (96%)
Length = 1163
Score = 97.8 bits (242), Expect = 6e-22
Identities = 45/70 (64%), Positives = 54/70 (76%)
Frame = +3
Query: 23 GDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLL 82
G+ YPGG FDPL L+ DP FAELKVKEIKNGRLAM + GF++QA +TGKGP++NLL
Sbjct: 708 GNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 887
Query: 83 DHFSDPFHNN 92
DH +P NN
Sbjct: 888 DHIDNPVANN 917
Score = 42.4 bits (98), Expect = 3e-05
Identities = 25/64 (39%), Positives = 37/64 (57%)
Frame = +3
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + + YL G+ +PG +D LS DPEAFA+ + E+ +GR AM+
Sbjct: 303 GPDRVKYLGPFSAQTPS-YLTGE--FPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAML 473
Query: 62 AWLG 65
LG
Sbjct: 474 GALG 485
>TC76645 similar to PIR|S16294|S16294 chlorophyll a/b-binding protein type I
precursor - tomato, partial (89%)
Length = 1071
Score = 94.7 bits (234), Expect = 5e-21
Identities = 53/93 (56%), Positives = 61/93 (64%)
Frame = +3
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
G EY R LE D +PGG FDPL L+ DP+ A LKVKEIKNGRLAM
Sbjct: 657 GAEYYRITNGLELE--------DKFHPGGP-FDPLGLANDPDQAAILKVKEIKNGRLAMF 809
Query: 62 AWLGFYMQAALTGKGPVQNLLDHFSDPFHNNLL 94
A LGF++QA +TG+GPV+NL H SDPF NNLL
Sbjct: 810 AMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLL 908
Score = 38.9 bits (89), Expect = 3e-04
Identities = 22/57 (38%), Positives = 31/57 (53%)
Frame = +3
Query: 20 YLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKG 76
YL G++ PG +DP LSK PE FA+ + E+ + R AM+ GF + A G
Sbjct: 357 YLTGEV--PGDYGYDPFGLSKKPEDFAKYQGYELIHARWAMLGAAGFIIPEAFNKYG 521
>BG457482 similar to PIR|T04049|T04 chlorophyll a/b-binding protein CP26
[imported] - Arabidopsis thaliana, partial (37%)
Length = 570
Score = 94.7 bits (234), Expect = 5e-21
Identities = 48/75 (64%), Positives = 57/75 (76%)
Frame = +1
Query: 20 YLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQ 79
+L D +PGG FDPL L+ DP+ A LKVKEIKNGRLAM A LGF++QA +TG+GPV+
Sbjct: 190 FLQEDKFHPGGP-FDPLGLANDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVE 366
Query: 80 NLLDHFSDPFHNNLL 94
NL H SDPF NNLL
Sbjct: 367 NLAKHLSDPFGNNLL 411
>BQ150490 similar to PIR|T04049|T040 chlorophyll a/b-binding protein CP26
[imported] - Arabidopsis thaliana, partial (35%)
Length = 727
Score = 94.7 bits (234), Expect = 5e-21
Identities = 53/93 (56%), Positives = 61/93 (64%)
Frame = +3
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
G EY R LE D +PGG FDPL L+ DP+ A LKVKEIKNGRLAM
Sbjct: 39 GAEYYRITNGLELE--------DKFHPGGP-FDPLGLANDPDQAAILKVKEIKNGRLAMF 191
Query: 62 AWLGFYMQAALTGKGPVQNLLDHFSDPFHNNLL 94
A LGF++QA +TG+GPV+NL H SDPF NNLL
Sbjct: 192 AMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLL 290
>BG456653 homologue to GP|3293555|gb| chlorophyll a/b binding protein
{Medicago sativa}, partial (55%)
Length = 511
Score = 91.3 bits (225), Expect = 5e-20
Identities = 45/71 (63%), Positives = 57/71 (79%)
Frame = -1
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG + D YPGG+ FDPL L++DPEAFAELKVKE+KNGRLAM + GF++QA +TGK
Sbjct: 271 PLGEVV--DPLYPGGS-FDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 101
Query: 76 GPVQNLLDHFS 86
GP++NL DH +
Sbjct: 100 GPIENLADHLA 68
>CA919263 similar to GP|12658406|gb light-harvesting complex II protein
precursor {Chlamydomonas reinhardtii}, partial (57%)
Length = 592
Score = 90.1 bits (222), Expect = 1e-19
Identities = 45/77 (58%), Positives = 55/77 (70%)
Frame = -3
Query: 12 EALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAA 71
+A EPL YPGG FDPL L+ DP+ AELKVKE+KNGRLAM + GF++QA
Sbjct: 371 DAAEPL---------YPGGP-FDPLGLADDPDTLAELKVKELKNGRLAMFSMFGFFIQAI 222
Query: 72 LTGKGPVQNLLDHFSDP 88
+TGKGP+QNL DH +DP
Sbjct: 221 VTGKGPIQNLNDHLADP 171
>TC82383 similar to GP|15430554|dbj|BAB64412. light-harvesting
chlorophyll-a/b binding protein LhcII-1.3 {Chlamydomonas
reinhardtii}, partial (62%)
Length = 615
Score = 89.0 bits (219), Expect = 3e-19
Identities = 46/81 (56%), Positives = 57/81 (69%)
Frame = +2
Query: 12 EALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAA 71
E L+PL +PG A FDPL L+ DP+ FAELKVKEIKNGRLAM + GF++QA
Sbjct: 242 EGLDPL---------HPGEA-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAI 391
Query: 72 LTGKGPVQNLLDHFSDPFHNN 92
+TGKGP+ NL DH ++P NN
Sbjct: 392 VTGKGPIANLNDHLANPSVNN 454
>TC76410 similar to GP|4689382|gb|AAD27878.1| chlorophyll a/b binding
protein CP29 {Vigna radiata}, complete
Length = 1138
Score = 86.7 bits (213), Expect = 1e-18
Identities = 39/72 (54%), Positives = 51/72 (70%)
Frame = +2
Query: 27 YPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLDHFS 86
YPGG FDPL L+ DPE A L++ EIK+ RLAM+A+LGF +QAA TGKGP+ N H S
Sbjct: 689 YPGGKFFDPLGLASDPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLS 868
Query: 87 DPFHNNLLGSLN 98
DP H ++ + +
Sbjct: 869 DPLHTTIIDTFS 904
>TC76818 homologue to GP|13265501|gb|AAG40043.2 AT3g54890 {Arabidopsis
thaliana}, partial (84%)
Length = 1010
Score = 84.3 bits (207), Expect = 7e-18
Identities = 40/73 (54%), Positives = 53/73 (71%), Gaps = 1/73 (1%)
Frame = +1
Query: 22 PGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYM-QAALTGKGPVQN 80
P YPGGA FDPL SKDP+ F E K+KE+KNGRLA++A++G + Q A G GP++N
Sbjct: 586 PEKKKYPGGA-FDPLGYSKDPKKFHEYKIKEVKNGRLALLAFVGIVVQQTAYPGTGPLEN 762
Query: 81 LLDHFSDPFHNNL 93
L H +DP+HNN+
Sbjct: 763 LATHLADPWHNNI 801
>TC79544 similar to PIR|F96510|F96510 light-harvesting complex protein
[imported] - Arabidopsis thaliana, partial (82%)
Length = 1076
Score = 83.2 bits (204), Expect = 1e-17
Identities = 40/78 (51%), Positives = 57/78 (72%)
Frame = +1
Query: 17 LGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKG 76
LG PG YPGG L +PL L+KD ++ E K+KEIKNGRLAM+A LG ++QA++T G
Sbjct: 622 LGGLEPG---YPGGPLLNPLGLAKDIKSAREWKLKEIKNGRLAMVAILGIFVQASVTHVG 792
Query: 77 PVQNLLDHFSDPFHNNLL 94
P+ NL++H S+P+H ++
Sbjct: 793 PIDNLVEHLSNPWHKTII 846
Score = 35.4 bits (80), Expect = 0.004
Identities = 26/83 (31%), Positives = 35/83 (41%), Gaps = 7/83 (8%)
Frame = +1
Query: 1 VGPEYARYCGSEALEPLGIYLPG-------DINYPGGALFDPLNLSKDPEAFAELKVKEI 53
V P + C + P +LPG D PG FDPL L +DPE+ E+
Sbjct: 199 VTPRCKQICAAAQQRPT--WLPGLDPPTYLDGTLPGDFGFDPLGLGEDPESLKWYVQAEL 372
Query: 54 KNGRLAMIAWLGFYMQAALTGKG 76
+ R AM+ LG + L G
Sbjct: 373 VHSRFAMLGVLGILVTDLLRVAG 441
>TC85476 homologue to PIR|T51616|T51616 chlorophyll a/b-binding protein
[imported] - garden pea, complete
Length = 1420
Score = 82.0 bits (201), Expect = 3e-17
Identities = 41/76 (53%), Positives = 55/76 (71%)
Frame = +2
Query: 23 GDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLL 82
G++ YPGG +F+PLN + EA K KEI NGRLAM+A+LGF +Q +TGKGP NLL
Sbjct: 629 GEVGYPGG-IFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLL 793
Query: 83 DHFSDPFHNNLLGSLN 98
H SDP+HN ++ +L+
Sbjct: 794 QHLSDPWHNTIVQTLS 841
Score = 38.1 bits (87), Expect = 5e-04
Identities = 22/57 (38%), Positives = 28/57 (48%)
Frame = +2
Query: 20 YLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKG 76
YL G + PG FDPL L++DPE E+ NGR AM+ G + T G
Sbjct: 284 YLTGSL--PGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTNIG 448
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.320 0.144 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,130,472
Number of Sequences: 36976
Number of extensions: 33487
Number of successful extensions: 212
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of query: 104
length of database: 9,014,727
effective HSP length: 80
effective length of query: 24
effective length of database: 6,056,647
effective search space: 145359528
effective search space used: 145359528
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)
Lotus: description of TM0335a.8