BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0335a.7
(632 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC79804 weakly similar to GP|6175165|gb|AAF04891.1| Mutator-like... 234 6e-62
BG451959 homologue to GP|6175165|gb| Mutator-like transposase {A... 112 3e-25
BI271388 similar to GP|10177186|db mutator-like transposase-like... 98 8e-21
AL375902 similar to GP|9759134|dbj mutator-like transposase-like... 83 4e-16
CB891859 similar to GP|6175165|gb| Mutator-like transposase {Ara... 67 3e-11
BF646328 similar to PIR|F84533|F845 Mutator-like transposase [im... 44 4e-11
BG586356 similar to GP|9759134|dbj mutator-like transposase-like... 63 4e-10
CA922976 weakly similar to GP|9502168|gb|A contains simlarity to... 35 0.11
AL375901 similar to GP|9759134|dbj mutator-like transposase-like... 34 0.19
AW586646 weakly similar to GP|15146244|gb At2g17220/T23A1.8 {Ara... 33 0.43
TC89977 similar to GP|5764395|gb|AAD51282.1| far-red impaired re... 32 0.57
AW687028 weakly similar to GP|9909176|dbj| hypothetical protein~... 32 0.74
BE319298 similar to GP|17385689|dbj putative Myb-related transcr... 32 0.97
TC76369 similar to PIR|T52336|T52336 probable type 1 membrane pr... 30 2.8
TC86301 similar to GP|8809622|dbj|BAA97173.1 Myb-related transcr... 30 2.8
TC76387 homologue to SP|Q40468|IF4Z_TOBAC Eukaryotic initiation ... 30 2.8
BQ144389 weakly similar to GP|21322711|em pherophorin-dz1 protei... 30 2.8
TC88921 similar to SP|P92966|RS41_ARATH Arginine/serine-rich spl... 29 4.8
TC93065 29 4.8
>TC79804 weakly similar to GP|6175165|gb|AAF04891.1| Mutator-like
transposase {Arabidopsis thaliana}, partial (57%)
Length = 2129
Score = 234 bits (598), Expect = 6e-62
Identities = 149/516 (28%), Positives = 255/516 (48%), Gaps = 4/516 (0%)
Frame = +1
Query: 37 QDFKFSLGMDFSSLLQFKDALHDHFVTIGREFEYMKNDSIRCRVKCRSKGCPFVILCSKV 96
+D F +G +F + F++A+ + + E +K+D IR KC S+GCP+ I K+
Sbjct: 163 EDHNFVVGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCASEGCPWRIRAVKL 342
Query: 97 GNKETFRIKTLVGEHNCAR--VFDNKSANVRWVKLKLLNKVSTMNKISTNEIVDDFRSNH 154
N TF I++L G H C R + + A+V W+ + ++ +I+ D +
Sbjct: 343 PNASTFTIRSLEGTHTCGRNALNGHHQASVDWIVSFIEERLRDNINYKPKDILHDIHKQY 522
Query: 155 GIGITRYRAWKGKQLAIQEVEGAIEMQYTLLWRFSNELRKRAAGNTCKINFESPRSTLFP 214
GI I +AW+ K+ + + G+ E + LL F E++K G+ K+ S
Sbjct: 523 GITIPYKQAWRAKERGLAAIYGSSEEGFYLLPSFCEEIKKTNPGSVAKVFTTGADS---- 690
Query: 215 RFSRFYMCLDGCKRGFLAGCRPFIGLDGCHLKTKHRGILLAAVARDANEQYFPLAFGVVE 274
RF R ++ GF+ GC P + L G LK+K+ L+A + DA+ FPLAF VV+
Sbjct: 691 RFQRLFISFYASIHGFVNGCLPIVALGGIQLKSKYLSTFLSATSFDADGGLFPLAFAVVD 870
Query: 275 SETKDSWMWFMELLMD--DIDPERSRRWVFISDQQKGLMEVFKEDMLHGSEHRLCVRHLY 332
E +SW WF+ L + +++ E + +F+SD QKG+++ + S H C+RHL
Sbjct: 871 VENDESWTWFLSELHNALEVNTECMPQIIFLSDGQKGIVDAIRRKFPR-SSHAFCMRHLS 1047
Query: 333 ANMKTKFGGGVLLRDLMMGAAKATYEAAWKEKMLLIKDANESAYQWLMEKPTSSWCRHAF 392
N+ +F L+ L+ AA AT A++EKM I++ + +A WL S W F
Sbjct: 1048ENIGKEFKNSRLIH-LLWSAAYATTINAFREKMAEIEEVSPNASMWLQHFHPSQWALVYF 1224
Query: 393 SLYSRCDVVMNNLSEAFNAAIMLARDKPILTMMEWIRTYVMGRFPQMMEKLHKHHGQIMP 452
+R + +N+ E FN I+ A++ PI+ ++E I++ + F K + P
Sbjct: 1225E-GTRYGHLSSNIEE-FNKWILEAQELPIIQVIERIQSKLKTEFDDRRLKSSSWCSVLTP 1398
Query: 453 RPLKRILHEVDHIKNWIPRVVGAQKYEVRHTITLERHVISLKDKSCTCRFWELNGFPCRH 512
+R++ ++ + +V+ + + E ++++ SC+CR W+L G PC H
Sbjct: 1399SSERRMVEAINRASTY--QVLKSDEVEFEVISADRSDIVNIGSHSCSCRDWQLYGIPCSH 1572
Query: 513 AASALTFNGNDPKQFVDDCYKREAYNATYENYVTPL 548
A +AL + D + C+ +Y T VTPL
Sbjct: 1573AVAALISSRKDVYAYTAKCFTVASYRDTVCRGVTPL 1680
Score = 45.1 bits (105), Expect = 8e-05
Identities = 30/91 (32%), Positives = 39/91 (41%), Gaps = 4/91 (4%)
Frame = +3
Query: 531 CYKREAYNATYENYVTPLPGPNQW----IVTPHDPVCILPPMYKRSAGRPKKLRRRDPYE 586
C K + Y + TP+PG +W +D + PP ++R GRP+K R
Sbjct: 1635 CCKLQGYRM--QRCYTPVPGKLEWRTDESALDNDIAVVRPPKFRRPPGRPEKKRICVEDH 1808
Query: 587 NDPNPTKLQRGGATWKCSRCKQYGHNKRGCK 617
N R T CSRC Q GH K CK
Sbjct: 1809 N--------RDKHTVHCSRCNQTGHYKTTCK 1877
>BG451959 homologue to GP|6175165|gb| Mutator-like transposase {Arabidopsis
thaliana}, partial (28%)
Length = 658
Score = 112 bits (281), Expect = 3e-25
Identities = 63/194 (32%), Positives = 105/194 (53%), Gaps = 2/194 (1%)
Frame = +2
Query: 145 EIVDDFRSNHGIGITRYRAWKGKQLAIQEVEGAIEMQYTLLWRFSNELRKRAAGNTCKIN 204
EI+++ HGI ++ +AW+GK+ + + G+ E Y LL ++ +++ G+ +
Sbjct: 86 EILEEIHRVHGITLSYKQAWRGKEHIMAAMRGSFEEGYRLLPQYCAHVKRTNPGSIASV- 262
Query: 205 FESPRSTLFPRFSRFYMCLDGCKRGFLAGCRPFIGLDGCHLKTKHRGILLAAVARDANEQ 264
+ +P F R ++ G L CRP +GLD +LK+K+ G LL A D +
Sbjct: 263 YGNPSDNCF---QRLFISFQASIYGLLNACRPLLGLDRIYLKSKYLGTLLLATGFDGDGA 433
Query: 265 YFPLAFGVVESETKDSWMWFMELLMD--DIDPERSRRWVFISDQQKGLMEVFKEDMLHGS 322
FPLAFGVV+ E D+WMWF+ L + +I+ E R +SD+Q+G+++ E +
Sbjct: 434 LFPLAFGVVDEENDDNWMWFLSKLHNLLEINTENMPRLTILSDRQQGIVDGV-EANFPTA 610
Query: 323 EHRLCVRHLYANMK 336
H C+RHL N +
Sbjct: 611 FHGFCMRHLSDNFR 652
>BI271388 similar to GP|10177186|db mutator-like transposase-like protein
{Arabidopsis thaliana}, partial (26%)
Length = 711
Score = 98.2 bits (243), Expect = 8e-21
Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 2/180 (1%)
Frame = +2
Query: 47 FSSLLQFKDALHDHFVTIGREFEYMKNDSIRCRVKCRSKGCPFVILCSKVGNKETFRIKT 106
F+S +F++ALH + + G + Y KNDS R VKC+S+GCP+ I SK+ + IK
Sbjct: 149 FNSFSEFREALHKYSIAHGFAYRYKKNDSHRVTVKCKSQGCPWRIYASKLSTTQLICIKK 328
Query: 107 LVGEHNC--ARVFDNKSANVRWVKLKLLNKVSTMNKISTNEIVDDFRSNHGIGITRYRAW 164
+ +H C + V A WV + K+ +I DD + +GI + +AW
Sbjct: 329 MTRDHTCEGSAVKAGYRATRGWVGNIIKEKLKASPNYRPKDIADDIKREYGIQLNYSQAW 508
Query: 165 KGKQLAIQEVEGAIEMQYTLLWRFSNELRKRAAGNTCKINFESPRSTLFPRFSRFYMCLD 224
+ K++A ++++G+ + YT L F ++++ G C N R FP CL+
Sbjct: 509 RAKEIAREQLQGSYKEAYTQLPFFCEKIKETNPGEFC--NIHDKRXLKFPSSFCIISCLN 682
>AL375902 similar to GP|9759134|dbj mutator-like transposase-like protein
{Arabidopsis thaliana}, partial (20%)
Length = 542
Score = 82.8 bits (203), Expect = 4e-16
Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 11/138 (7%)
Frame = +2
Query: 494 KDKSCTCRFWELNGFPCRHAASALTFNGNDPKQFVDDCYKREAYNATYENYVTPLPGPNQ 553
+ + C+CR W+L G+PC HAA+AL G++ F + C+ ++Y Y + P+P +Q
Sbjct: 2 RSRECSCRRWQLYGYPCAHAAAALISCGHNAHMFAEPCFTVQSYRMAYSQMIYPIPDKSQ 181
Query: 554 WIVTPHD-----------PVCILPPMYKRSAGRPKKLRRRDPYENDPNPTKLQRGGATWK 602
W H + I PP +R GRPKK R EN P ++ +
Sbjct: 182 W--REHGEGAEGGGGARVDIVIHPPKIRRPPGRPKKKVLR--VENFKRPKRVV------Q 331
Query: 603 CSRCKQYGHNKRGCKNPV 620
C RC GH+++ C P+
Sbjct: 332 CGRCHMLGHSQKKCTMPI 385
>CB891859 similar to GP|6175165|gb| Mutator-like transposase {Arabidopsis
thaliana}, partial (27%)
Length = 625
Score = 66.6 bits (161), Expect = 3e-11
Identities = 47/211 (22%), Positives = 103/211 (48%)
Frame = +1
Query: 291 DIDPERSRRWVFISDQQKGLMEVFKEDMLHGSEHRLCVRHLYANMKTKFGGGVLLRDLMM 350
+++ E R +SD+Q+G+++ + + + H C+RHL + + +F +L+ +L+
Sbjct: 7 EVNTENMPRLTILSDRQQGIVDGVEANF-PTAFHGFCMRHLSDSFRKEFNNTMLV-NLLW 180
Query: 351 GAAKATYEAAWKEKMLLIKDANESAYQWLMEKPTSSWCRHAFSLYSRCDVVMNNLSEAFN 410
AA ++ K++ I++ ++ A W+ P W F + R + N+ EA N
Sbjct: 181 EAANCLTIIEFEGKVMEIEEISQDAAYWIRRVPPRLWATAYFEGH-RFGHLTANIVEALN 357
Query: 411 AAIMLARDKPILTMMEWIRTYVMGRFPQMMEKLHKHHGQIMPRPLKRILHEVDHIKNWIP 470
+ I+ A PI+ MME IR +M F + E + ++P + + ++ + +
Sbjct: 358 SWILEASGLPIIQMMECIRRQLMTWFNERRETSMQWTSILVPSAERSVAEALERARTY-- 531
Query: 471 RVVGAQKYEVRHTITLERHVISLKDKSCTCR 501
+V+ A + E +++ ++++ C CR
Sbjct: 532 QVLRANEAEFEVISHEGTNIVDIRNRCCLCR 624
>BF646328 similar to PIR|F84533|F845 Mutator-like transposase [imported] -
Arabidopsis thaliana, partial (3%)
Length = 636
Score = 43.9 bits (102), Expect(2) = 4e-11
Identities = 15/46 (32%), Positives = 25/46 (53%)
Frame = -1
Query: 488 RHVISLKDKSCTCRFWELNGFPCRHAASALTFNGNDPKQFVDDCYK 533
+++++L ++C CR W L G PC H + NG + FV Y+
Sbjct: 414 KYIVNLAQRTCACRKWNLTGIPCAHVIPCIWHNGLADENFVSSYYR 277
Score = 42.0 bits (97), Expect(2) = 4e-11
Identities = 23/52 (44%), Positives = 30/52 (57%)
Frame = -3
Query: 531 CYKREAYNATYENYVTPLPGPNQWIVTPHDPVCILPPMYKRSAGRPKKLRRR 582
C ++ ATY + V P GP W VT + I P +RSAGRPKKLR++
Sbjct: 199 CCRKSQCLATYSHIVLPSSGPKLWPVTNTEH--INPLAKRRSAGRPKKLRKK 50
>BG586356 similar to GP|9759134|dbj mutator-like transposase-like protein
{Arabidopsis thaliana}, partial (20%)
Length = 696
Score = 62.8 bits (151), Expect = 4e-10
Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Frame = +3
Query: 43 LGMDFSSLLQFKDALHDHFVTIGREFEYMKNDSIRCRVKCRSKGCPFVILCSKVGNKETF 102
+G +F + + L D + + + +K+D R KC +GCP+ + +K TF
Sbjct: 333 IGQEFPDVETCRRTLKDIAIAMHFDLRIVKSDRSRFIAKCSKEGCPWRVHVAKCPGVPTF 512
Query: 103 RIKTLVGEHNC--ARVFDNKSANVRWVKLKLLNKVSTMNKISTNEIVDDFRSNHGIGIT 159
I+TL +H C R ++ A+V WV + +++ ++ EI+ D R HG+ ++
Sbjct: 513 TIRTLQADHTCEGVRNLHHQQASVGWVARSVESRIRDNPQVKPREILQDIRDQHGVAVS 689
>CA922976 weakly similar to GP|9502168|gb|A contains simlarity to Arabidopsis
thaliana far-red impaired response protein
(GB:AAD51282.1), partial (11%)
Length = 827
Score = 34.7 bits (78), Expect = 0.11
Identities = 19/45 (42%), Positives = 27/45 (59%), Gaps = 5/45 (11%)
Frame = -3
Query: 478 YEVRHTITL--ERHVISLKDKS---CTCRFWELNGFPCRHAASAL 517
Y +RH+ L ERHV+ L +K C+C+ +E +G CRHA L
Sbjct: 777 YIIRHSKKLDGERHVLWLPEKEQILCSCKEFESSGILCRHALRIL 643
>AL375901 similar to GP|9759134|dbj mutator-like transposase-like protein
{Arabidopsis thaliana}, partial (27%)
Length = 493
Score = 33.9 bits (76), Expect = 0.19
Identities = 28/137 (20%), Positives = 54/137 (38%)
Frame = +3
Query: 322 SEHRLCVRHLYANMKTKFGGGVLLRDLMMGAAKATYEAAWKEKMLLIKDANESAYQWLME 381
+ H C+R++ N + F L+ ++ A A A ++ K+ + + ++ W
Sbjct: 18 ASHGFCLRYVSENFRDTFKNTKLV-NIFWNAVYALTAAEFESKITEMIEVSQDVISWFQH 194
Query: 382 KPTSSWCRHAFSLYSRCDVVMNNLSEAFNAAIMLARDKPILTMMEWIRTYVMGRFPQMME 441
P W F + +N A+ + P++ MME+IR + F E
Sbjct: 195 FPPFLWAVAYFDGVRYGHFTLGVTELLYNWALE-CHELPVVQMMEYIRQQMTSWFNDRRE 371
Query: 442 KLHKHHGQIMPRPLKRI 458
+ ++P KRI
Sbjct: 372 VGMEWTSILVPSAEKRI 422
>AW586646 weakly similar to GP|15146244|gb At2g17220/T23A1.8 {Arabidopsis
thaliana}, partial (38%)
Length = 550
Score = 32.7 bits (73), Expect = 0.43
Identities = 14/47 (29%), Positives = 28/47 (58%)
Frame = -1
Query: 423 TMMEWIRTYVMGRFPQMMEKLHKHHGQIMPRPLKRILHEVDHIKNWI 469
T IRT+ R ++++ + H +++P+P+ ++HE DH K+ I
Sbjct: 460 TTQSHIRTHHFSRTNDLLQRTPEQHSRVIPQPV--LIHECDHQKDQI 326
>TC89977 similar to GP|5764395|gb|AAD51282.1| far-red impaired response
protein {Arabidopsis thaliana}, partial (35%)
Length = 1523
Score = 32.3 bits (72), Expect = 0.57
Identities = 13/21 (61%), Positives = 14/21 (65%)
Frame = +2
Query: 497 SCTCRFWELNGFPCRHAASAL 517
SC CR +E GF CRHA S L
Sbjct: 380 SCFCRLFEYKGFLCRHALSVL 442
>AW687028 weakly similar to GP|9909176|dbj| hypothetical protein~similar to
Arabidopsis thaliana F20D10.300, partial (11%)
Length = 662
Score = 32.0 bits (71), Expect = 0.74
Identities = 20/97 (20%), Positives = 43/97 (43%)
Frame = +1
Query: 238 IGLDGCHLKTKHRGILLAAVARDANEQYFPLAFGVVESETKDSWMWFMELLMDDIDPERS 297
+ D + K K+ L + + Q ++E ET +S+ W + ++ ++ +
Sbjct: 7 LAFDTTYKKNKYNYPLCIFSGCNHHSQTIIFGVALLEDETIESYKWVLNRFLECMENKFP 186
Query: 298 RRWVFISDQQKGLMEVFKEDMLHGSEHRLCVRHLYAN 334
+ ++D + E K+ + + HRLC HL+ N
Sbjct: 187 K--AVVTDGDGSMREAIKQ-VFPDASHRLCAWHLHKN 288
>BE319298 similar to GP|17385689|dbj putative Myb-related transcription
factor {Oryza sativa (japonica cultivar-group)}, partial
(20%)
Length = 425
Score = 31.6 bits (70), Expect = 0.97
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 602 KCSRCKQYGHNKRGCKNPVPEE 623
KCS C +GHN R C N + E+
Sbjct: 38 KCSYCGNFGHNSRTCNNSLKEQ 103
>TC76369 similar to PIR|T52336|T52336 probable type 1 membrane protein
[imported] - Arabidopsis thaliana, partial (10%)
Length = 1571
Score = 30.0 bits (66), Expect = 2.8
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = -2
Query: 452 PRPLKRILHEVDHIKNWIPRVVGAQKYEVRHTITLER 488
P+ ++H++ +I+NW+ R + KY H + R
Sbjct: 1411 PKS*SNLIHDIMNIRNWLHRSINNNKYNNAHRLEASR 1301
>TC86301 similar to GP|8809622|dbj|BAA97173.1 Myb-related transcription
activator-like {Arabidopsis thaliana}, partial (56%)
Length = 1396
Score = 30.0 bits (66), Expect = 2.8
Identities = 14/30 (46%), Positives = 16/30 (52%), Gaps = 3/30 (10%)
Frame = +2
Query: 592 TKLQRGGA---TWKCSRCKQYGHNKRGCKN 618
T L R G+ T +CS C GHN R C N
Sbjct: 155 TSLLRSGSEIMTRRCSHCSHNGHNSRTCPN 244
>TC76387 homologue to SP|Q40468|IF4Z_TOBAC Eukaryotic initiation factor
4A-15 (eIF-4A-15) (eIF4A-15). [Common tobacco]
{Nicotiana tabacum}, partial (56%)
Length = 1562
Score = 30.0 bits (66), Expect = 2.8
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +3
Query: 452 PRPLKRILHEVDHIKNWIPRVVGAQKYEVRHTITLER 488
P+ ++H++ +I+NW+ R + KY H + R
Sbjct: 33 PKS*SNLIHDIMNIRNWLHRSINNNKYNNAHRLEASR 143
>BQ144389 weakly similar to GP|21322711|em pherophorin-dz1 protein {Volvox
carteri f. nagariensis}, partial (4%)
Length = 1283
Score = 30.0 bits (66), Expect = 2.8
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 9/54 (16%)
Frame = -3
Query: 547 PLPGPN---------QWIVTPHDPVCILPPMYKRSAGRPKKLRRRDPYENDPNP 591
P PGPN + +P PV + PP AGRPK R P + P+P
Sbjct: 249 PPPGPNFCPPSPLCLTSLTSPPAPVALAPP----PAGRPKNARDGPPPKTAPDP 100
>TC88921 similar to SP|P92966|RS41_ARATH Arginine/serine-rich splicing
factor RSP41. [Mouse-ear cress] {Arabidopsis thaliana},
partial (33%)
Length = 1419
Score = 29.3 bits (64), Expect = 4.8
Identities = 15/59 (25%), Positives = 25/59 (41%)
Frame = +1
Query: 566 PPMYKRSAGRPKKLRRRDPYENDPNPTKLQRGGATWKCSRCKQYGHNKRGCKNPVPEEQ 624
P Y+R G P R PY+ + + RG + + ++ G G +NP P +
Sbjct: 376 PSPYRRERGSPDYGRGPSPYKRERSSPDYGRGNSRSRSPHRRERGSPAYGRRNPSPNRR 552
>TC93065
Length = 783
Score = 29.3 bits (64), Expect = 4.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 602 KCSRCKQYGHNKRGCKNPVPEEQSE 626
KC C Q GH ++ CKN +++ E
Sbjct: 632 KCRACNQLGHVEKVCKNKTNQQEQE 706
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.323 0.137 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,161,268
Number of Sequences: 36976
Number of extensions: 373594
Number of successful extensions: 1724
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 1686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1713
length of query: 632
length of database: 9,014,727
effective HSP length: 102
effective length of query: 530
effective length of database: 5,243,175
effective search space: 2778882750
effective search space used: 2778882750
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0335a.7