BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0335a.6
(109 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW691018 weakly similar to GP|2462935|em open reading frame 1 {B... 82 3e-17
BF649643 similar to PIR|H86486|H86 protein Ty1/copia-element pol... 60 1e-10
BF645022 weakly similar to GP|8777581|dbj retroelement pol polyp... 50 1e-07
BQ122188 weakly similar to GP|9758772|dbj| contains similarity t... 47 1e-06
TC92872 31 0.064
CB065282 weakly similar to PIR|H85913|H859 probable transcriptio... 29 0.24
TC81190 type IIB calcium ATPase [Medicago truncatula] 28 0.71
BG450947 similar to GP|6492237|gb|A magnesium/proton exchanger A... 28 0.71
TC81230 27 0.92
TC85869 homologue to GP|14531296|gb|AAK66161.1 pectate lyase {Fr... 27 1.2
TC79809 homologue to GP|6446577|gb|AAD39534.2| cellulose synthas... 26 2.1
TC77788 similar to PIR|S57948|S57948 HMGI/Y protein - garden pea... 26 2.7
TC87302 similar to GP|19911199|dbj|BAB86926. glucosyltransferase... 25 3.5
TC77293 similar to GP|15081594|gb|AAK82651.1 RSH-like protein {C... 25 3.5
TC86792 similar to GP|10281004|dbj|BAB13742. pseudo-response reg... 25 3.5
TC81138 similar to PIR|T52606|T52606 squamosa promoter binding p... 25 3.5
TC87477 homologue to SP|O43992|RS2_LEIAM 40S ribosomal protein S... 25 3.5
TC88482 auxin influx carrier protein [Medicago truncatula] 25 4.6
TC86826 similar to PIR|F96568|F96568 probable lipase 20450-2164... 25 4.6
TC81248 similar to SP|O81004|YB87_ARATH Hypothetical GTP-binding... 25 6.0
>AW691018 weakly similar to GP|2462935|em open reading frame 1 {Brassica
oleracea}, partial (12%)
Length = 639
Score = 82.0 bits (201), Expect = 3e-17
Identities = 39/93 (41%), Positives = 62/93 (65%), Gaps = 1/93 (1%)
Frame = +2
Query: 16 PRPRLVSQPLTESNYNTWSRAVLVALSMKNKVPFVDGSLPRPEEDNPQLNSWIRNNNVVI 75
P LV+QPL NY WSR++L++LS KNK+ +DG++ P D+P+L W R N++V+
Sbjct: 182 PGISLVNQPLNGGNYGEWSRSMLLSLSAKNKLGLIDGTVKAPSADDPKLPLWKRCNDLVL 361
Query: 76 SWIFNAVSKDITTS-MYSDTASEIYHGLDTRRS 107
+WI +++ DI S ++SDTA+ ++ L R S
Sbjct: 362 TWILHSIEPDIARSVIFSDTAAAVWSDLHDRFS 460
>BF649643 similar to PIR|H86486|H86 protein Ty1/copia-element polyprotein
[imported] - Arabidopsis thaliana, partial (2%)
Length = 608
Score = 60.1 bits (144), Expect = 1e-10
Identities = 31/87 (35%), Positives = 56/87 (63%), Gaps = 3/87 (3%)
Frame = +1
Query: 16 PRPRLVSQPLTESNYNTWSRAVLVALSMKNKVPFVDGSLPRPEE-DNP-QLNSWIRNNNV 73
P LV L +NY++WSR+++ AL+ KNKV F++GS+ P E D P + W R N++
Sbjct: 148 PGHLLVPTKLNGTNYSSWSRSMVHALTAKNKVGFINGSIKTPSEVDQPAEYALWNRCNSM 327
Query: 74 VISWIFNAVSKDITTS-MYSDTASEIY 99
++SW+ ++V D+ +++ TA +++
Sbjct: 328 ILSWLTHSVEPDLAKGVIHAKTACQVW 408
>BF645022 weakly similar to GP|8777581|dbj retroelement pol polyprotein-like
{Arabidopsis thaliana}, partial (8%)
Length = 685
Score = 50.1 bits (118), Expect = 1e-07
Identities = 24/78 (30%), Positives = 41/78 (51%), Gaps = 1/78 (1%)
Frame = -2
Query: 29 NYNTWSRAVLVALSMKNKVPFVDGSLPRPEEDNPQLNSWIRNNNVVISWIFNAVSKDI-T 87
NY+ WSRA+ + K K FV+G +P+P +L W +++I+W+ N + + +
Sbjct: 312 NYDEWSRAIRTSFQAKRKYGFVEGKIPKPTTPE-KLEDWKAVQSMLIAWLLNTIEPSLRS 136
Query: 88 TSMYSDTASEIYHGLDTR 105
T Y D A ++ L R
Sbjct: 135 TLSYYDDAESLWTHLKQR 82
>BQ122188 weakly similar to GP|9758772|dbj| contains similarity to
retroelement pol polyprotein~gene_id:MNJ7.3 {Arabidopsis
thaliana}, partial (7%)
Length = 708
Score = 47.0 bits (110), Expect = 1e-06
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = -3
Query: 16 PRPRLVSQPLT-ESNYNTWSRAVLVALSMKNKVPFVDGSLPRPEEDNPQLNSWIR 69
P LV+ PL N+ +W R++ +AL+ KNK+ FVDG+ P + + N WIR
Sbjct: 166 PAVELVTPPLEGNKNFQSWIRSMRLALTSKNKIAFVDGTFLTPAKSDALYNQWIR 2
>TC92872
Length = 923
Score = 31.2 bits (69), Expect = 0.064
Identities = 19/95 (20%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Frame = +1
Query: 25 LTESNYNTWSRAVLVALSMKNKVPFVDGSLPRPEE---------DNPQLNSWIRNNNVVI 75
L+ N+ W R V L+ + +DG+ P E NP W + ++I
Sbjct: 109 LSRKNFRAWKRQVTTLLAGIEVMGHIDGTTPIQTETIINNGVSAPNPDYTKWFTLDQLII 288
Query: 76 SWIFNAVSKDITTSMYS-DTASEIYHGLDTRRSTT 109
+ + +++++ + S S +TA ++ ++++ + T
Sbjct: 289 NLLLSSMTEADSISFASYETARTLWVAIESQFNNT 393
>CB065282 weakly similar to PIR|H85913|H859 probable transcription
regulator ygaE [imported] - Escherichia coli (strain
O157:H7), partial (41%)
Length = 458
Score = 29.3 bits (64), Expect = 0.24
Identities = 11/30 (36%), Positives = 18/30 (59%)
Frame = +2
Query: 13 FRWPRPRLVSQPLTESNYNTWSRAVLVALS 42
++WPR + P+ E+ WS +L+ALS
Sbjct: 41 YQWPRSASIIWPIIETGVIRWSSIILLALS 130
>TC81190 type IIB calcium ATPase [Medicago truncatula]
Length = 3277
Score = 27.7 bits (60), Expect = 0.71
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 9 LPSSFRWPRPRLVSQPLTESNYNTWSR 35
LPS F W + LVSQP+ +N W R
Sbjct: 1342 LPSFFSWSKQELVSQPM--ANPQGWQR 1268
>BG450947 similar to GP|6492237|gb|A magnesium/proton exchanger AtMHX
{Arabidopsis thaliana}, partial (13%)
Length = 410
Score = 27.7 bits (60), Expect = 0.71
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 64 LNSWIRNNNVVISWIFNAVSKDITTSMYSDTASE 97
L+SW+ N + F VSK +++S+ S T SE
Sbjct: 279 LDSWLSTVNASTNCCFQIVSKHVSSSLVSITLSE 178
>TC81230
Length = 958
Score = 27.3 bits (59), Expect = 0.92
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Frame = +1
Query: 21 VSQPLTESNYNTWSRAVLVALSMKNKVPFVDGSLPRPEEDN--------PQLNSWIRNNN 72
+S L SNYN W+ ++ L + +V G P + +L W N+
Sbjct: 226 ISIILNGSNYNHWAESMCGFLKGRRLWRYVTGDKKCPTKGKDDTADAFADKLEEWDSKNH 405
Query: 73 VVISWIFN 80
+I+W N
Sbjct: 406 QIITWFRN 429
>TC85869 homologue to GP|14531296|gb|AAK66161.1 pectate lyase {Fragaria x
ananassa}, complete
Length = 2263
Score = 26.9 bits (58), Expect = 1.2
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -3
Query: 65 NSWIRNNNVVISWIFNAVSKDITTSMYSDTASEIYHGLDTRRSTT 109
+SW R N V+ISW+ + + I T+ +G+ T +TT
Sbjct: 629 SSWPRVNRVIISWVSDNIVLSIATT----------NGVSTETNTT 525
>TC79809 homologue to GP|6446577|gb|AAD39534.2| cellulose synthase
catalytic subunit {Gossypium hirsutum}, partial (29%)
Length = 1139
Score = 26.2 bits (56), Expect = 2.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 68 IRNNNVVISWIFNAVSKDITT 88
IRN I WI+ +V++DI T
Sbjct: 7 IRNGGTEIGWIYGSVTEDILT 69
>TC77788 similar to PIR|S57948|S57948 HMGI/Y protein - garden pea, partial
(87%)
Length = 981
Score = 25.8 bits (55), Expect = 2.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 7 SFLPSSFRWPRPRLVSQPLTESNYNTWSRAVLVALS 42
S L +FR P P + ++ NTWS +++ LS
Sbjct: 701 SHLRLNFRRPTPSPSTSSWNSNSSNTWSSIIIINLS 594
>TC87302 similar to GP|19911199|dbj|BAB86926. glucosyltransferase-8 {Vigna
angularis}, partial (53%)
Length = 1787
Score = 25.4 bits (54), Expect = 3.5
Identities = 10/13 (76%), Positives = 11/13 (83%)
Frame = -1
Query: 2 GRHCQSFLPSSFR 14
G CQ+FLPSSFR
Sbjct: 755 GPKCQAFLPSSFR 717
>TC77293 similar to GP|15081594|gb|AAK82651.1 RSH-like protein {Capsicum
annuum}, partial (70%)
Length = 1931
Score = 25.4 bits (54), Expect = 3.5
Identities = 15/43 (34%), Positives = 25/43 (57%), Gaps = 4/43 (9%)
Frame = +2
Query: 56 RPEEDNPQLNSWIRNN----NVVISWIFNAVSKDITTSMYSDT 94
R +ED+ QL+S++ V++W A+SKD T+ Y D+
Sbjct: 1205 RYKEDHCQLSSYVLQMVEWARWVVTWQCEAMSKDSTSVGYVDS 1333
>TC86792 similar to GP|10281004|dbj|BAB13742. pseudo-response regulator 7
{Arabidopsis thaliana}, partial (32%)
Length = 2209
Score = 25.4 bits (54), Expect = 3.5
Identities = 15/40 (37%), Positives = 20/40 (49%)
Frame = -2
Query: 70 NNNVVISWIFNAVSKDITTSMYSDTASEIYHGLDTRRSTT 109
NNN+++ TT MYS T I H +TRR+ T
Sbjct: 2130 NNNIIV-----------TTEMYSGTKYLITH*QNTRRNRT 2044
>TC81138 similar to PIR|T52606|T52606 squamosa promoter binding protein 7
[imported] - Arabidopsis thaliana (fragment), partial
(32%)
Length = 743
Score = 25.4 bits (54), Expect = 3.5
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 61 NPQLNSWIRNNNVVISWIFNAVSKDITTSMYSDTASEIYH 100
NP LN + + WI +S TS+ S T+ I+H
Sbjct: 126 NPNLNQFS------LQWILPKISPPFGTSLTSSTSMTIFH 227
>TC87477 homologue to SP|O43992|RS2_LEIAM 40S ribosomal protein S2.
{Leishmania amazonensis}, partial (6%)
Length = 836
Score = 25.4 bits (54), Expect = 3.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 8 FLPSSFRWPRPRLVSQPLTESNYNTWSRAV 37
FLPS R PRPR P + S+ + SR +
Sbjct: 165 FLPSRSRPPRPRPPRPPRSRSSRRSRSRLI 76
>TC88482 auxin influx carrier protein [Medicago truncatula]
Length = 2261
Score = 25.0 bits (53), Expect = 4.6
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 8/53 (15%)
Frame = -3
Query: 33 WSRAVLVALSMKNKVPFVDG--------SLPRPEEDNPQLNSWIRNNNVVISW 77
W LVALS K K + S P+P NP N I+N + +W
Sbjct: 1770 WWWFALVALSKKPKCINLSNEVGHTSPSSKPKPNHQNPYHNKCIKNIHCCPAW 1612
>TC86826 similar to PIR|F96568|F96568 probable lipase 20450-21648
[imported] - Arabidopsis thaliana, partial (93%)
Length = 1214
Score = 25.0 bits (53), Expect = 4.6
Identities = 22/79 (27%), Positives = 32/79 (39%), Gaps = 2/79 (2%)
Frame = -2
Query: 7 SFLPSSFRWPRPR--LVSQPLTESNYNTWSRAVLVALSMKNKVPFVDGSLPRPEEDNPQL 64
SFL R R R + S + + + +L LS K P P ++
Sbjct: 856 SFLIQQLRRRRARDTISSTMCRKKRHRYIAEIILHILSDSKKFPH------GPYSRWARI 695
Query: 65 NSWIRNNNVVISWIFNAVS 83
WIR+NN+ + WI N S
Sbjct: 694 PPWIRSNNLQLIWIPNCFS 638
>TC81248 similar to SP|O81004|YB87_ARATH Hypothetical GTP-binding protein
At2g22870. [Mouse-ear cress] {Arabidopsis thaliana},
partial (78%)
Length = 1177
Score = 24.6 bits (52), Expect = 6.0
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = +3
Query: 34 SRAVLVALSMKNKVPFVDGSLPRPEEDNPQLNSWIRNNNVVISWIFNAVSK 84
+R LVA+ + +D S+P P+ + +W+ NN+ ++++F K
Sbjct: 630 NRDTLVAVLL-----LIDASVP-PQRIDFDCANWLGRNNIPVTFVFTKCDK 764
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.316 0.130 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,131,674
Number of Sequences: 36976
Number of extensions: 55529
Number of successful extensions: 327
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of query: 109
length of database: 9,014,727
effective HSP length: 85
effective length of query: 24
effective length of database: 5,871,767
effective search space: 140922408
effective search space used: 140922408
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)
Lotus: description of TM0335a.6